HMBS (hydroxymethylbilane synthase) - Rat Genome Database

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Gene: HMBS (hydroxymethylbilane synthase) Chlorocebus sabaeus
Analyze
Symbol: HMBS
Name: hydroxymethylbilane synthase
RGD ID: 18437284
Description: ENCODES a protein that exhibits amine binding (ortholog); carboxylic acid binding (ortholog); hydroxymethylbilane synthase activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); astrocyte differentiation (ortholog); cellular response to amine stimulus (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; heme biosynthetic pathway; ASSOCIATED WITH Abdominal Pain (ortholog); acute intermittent porphyria (ortholog); Acute Intermittent Porphyria, Nonerythroid Variant (ortholog); FOUND IN axon (ortholog); condensed chromosome (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: porphobilinogen deaminase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,457,799 - 110,466,361 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,457,537 - 110,466,095 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,567,851 - 15,576,221 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Object Symbol
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Reference
Notes
Source
Original Reference(s)
HMBSGreen Monkeyacute intermittent porphyria susceptibilityISORGD:7330959068941DNA:missense mutation:exon 10: p.R173W (c.517C>T) (human)RGDPMID:9523350|REF_RGD_ID:19165353
HMBSGreen Monkeyacute intermittent porphyria severityISORGD:7330969068941DNA:missense mutation:cds: p.R167Q (c.500G>A) (mouse)RGDPMID:30615115|REF_RGD_ID:21079460
HMBSGreen Monkeyacute intermittent porphyria treatmentISORGD:7330959068941human mRNA in a mouse modelRGDPMID:30297912|REF_RGD_ID:21079456
HMBSGreen Monkeyacute intermittent porphyria treatmentISORGD:7330959068941human gene in a mouse modelRGDPMID:28990424|REF_RGD_ID:21079452
HMBSGreen Monkeybilirubin metabolic disorder  ISORGD:28019068941protein:increased activity:liver (rat)RGDPMID:3963818|REF_RGD_ID:4144803
HMBSGreen MonkeyExperimental Diabetes Mellitus  ISORGD:28019068941protein:decreased activity:liver (rat)RGDPMID:6688350|REF_RGD_ID:4144808
HMBSGreen MonkeyHepatic Porphyrias  ISORGD:28019068941protein:increased activity:liver (rat)RGDPMID:6721832|REF_RGD_ID:4144806
HMBSGreen MonkeyHypercholesterolemia  ISORGD:7330959068941associated with Porphyria, Acute Intermittent (MeSH:D017118); protein:reduced activity:erythrocytesRGDPMID:2809566|REF_RGD_ID:2301684
HMBSGreen Monkeyliver carcinoma sexual_dimorphismISORGD:28019068941Protein:increased activity:liver (rat)RGDPMID:1781034|REF_RGD_ID:25440495
HMBSGreen MonkeyLiver Metastasis  ISORGD:28019068941associated with colon adenocarcinoma;protein:decreased activity:liver(rat)RGDPMID:1386052|REF_RGD_ID:25440496
HMBSGreen Monkeyobstructive jaundice  ISORGD:28019068941Protein:increased activity:liver (rat)RGDPMID:3963818|REF_RGD_ID:4144803
HMBSGreen Monkeyprostate carcinoma  ISORGD:7330959068941mRNA:decreased expression:tumor:in matched malignant and non-malignant sample pairs (p = 0.009)RGDPMID:16211407|REF_RGD_ID:2301682
HMBSGreen Monkeyseminoma  ISORGD:7330959068941mRNA:increased expression:tumorRGDPMID:15823405|REF_RGD_ID:2301683
HMBSGreen Monkeysickle cell anemia  ISORGD:7330959068941protein:increased activity:erythrocyteRGDPMID:900140|REF_RGD_ID:12904674
HMBSGreen Monkeyurinary bladder cancer  ISORGD:7330959068941urinary bladder transitional cell carcinoma; mRNA:decreased expression:tumor:in matched malignant and non-malignant sample pairs (p more ...RGDPMID:16600798|REF_RGD_ID:2301681
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMBSGreen MonkeyAbdominal Pain  ISORGD:7330958554872ClinVar Annotator: match by term: Abdominal painClinVar 
HMBSGreen Monkeyacute intermittent porphyria  ISORGD:7330958554872ClinVar Annotator: match by term: Abnormality of the heme biosynthetic pathway | ClinVar Annotator: match more ...ClinVarPMID:10453740|PMID:10494093|PMID:10502788|PMID:10602775|PMID:10782018|PMID:10790212|PMID:10944860|PMID:11013452|PMID:11030413|PMID:11055586|PMID:11399210|PMID:11591889|PMID:11831862|PMID:11857754|PMID:12357456|PMID:12372055|PMID:12566739|PMID:12773194|PMID:1301948|PMID:1427766|PMID:1496994|PMID:15003823|PMID:15469427|PMID:15534187|PMID:15643298|PMID:1577472|PMID:16025832|PMID:16199547|PMID:16211556|PMID:16817012|PMID:1714233|PMID:17298216|PMID:17298217|PMID:1747120|PMID:17576681|PMID:18406650|PMID:18414213|PMID:18627369|PMID:19138865|PMID:19207107|PMID:19267997|PMID:19292878|PMID:19401933|PMID:19460837|PMID:1961762|PMID:19656452|PMID:19656453|PMID:19694018|PMID:2025226|PMID:20301372|PMID:20978940|PMID:2227955|PMID:2243128|PMID:2246851|PMID:2246852|PMID:22748422|PMID:23815679|PMID:24055113|PMID:24997713|PMID:25016127|PMID:25118551|PMID:25525159|PMID:25637381|PMID:25741868|PMID:26062020|PMID:26075277|PMID:26095755|PMID:26582343|PMID:27507172|PMID:27539938|PMID:27558376|PMID:27769855|PMID:27849156|PMID:27884173|PMID:2789372|PMID:28492532|PMID:2864531|PMID:29360981|PMID:29594648|PMID:30071891|PMID:30385147|PMID:30740734|PMID:30766957|PMID:31044425|PMID:31073229|PMID:31153822|PMID:31216405|PMID:31572191|PMID:32191290|PMID:32197664|PMID:32581362|PMID:32844070|PMID:33445488|PMID:34089223|PMID:34411356|PMID:34426522|PMID:35722412|PMID:36115019|PMID:36304064|PMID:36329616|PMID:36409970|PMID:36627197|PMID:37344829|PMID:6985467|PMID:7635464|PMID:7757070|PMID:7962538|PMID:8081367|PMID:8096492|PMID:8168829|PMID:8262514|PMID:8262523|PMID:8268934|PMID:8270254|PMID:8270256|PMID:8401516|PMID:8533808|PMID:8565205|PMID:9067752|PMID:9199558|PMID:9225970|PMID:9238757|PMID:9281416|PMID:9350165|PMID:9463797|PMID:9536098|PMID:9654202|PMID:9702975
HMBSGreen MonkeyAcute Intermittent Porphyria, Nonerythroid Variant  ISORGD:7330958554872ClinVar Annotator: match by term: Porphyria, acute intermittent, nonerythroid variantClinVarPMID:10343207|PMID:11071386|PMID:12406973|PMID:16199547|PMID:2511016|PMID:2563167|PMID:25923088|PMID:27539938|PMID:28492532|PMID:2915972|PMID:7757070|PMID:7962538|PMID:9199558|PMID:9860299
HMBSGreen Monkeyacute porphyria  ISORGD:7330958554872ClinVar Annotator: match by term: Acute PorphyriaClinVarPMID:11055586|PMID:11399210|PMID:12372055|PMID:1301948|PMID:15643298|PMID:16211556|PMID:16817012|PMID:17298217|PMID:1747120|PMID:18414213|PMID:23815679|PMID:25118551|PMID:25741868|PMID:27507172|PMID:27539938|PMID:28492532|PMID:2864531|PMID:29360981|PMID:30071891|PMID:30385147|PMID:30740734|PMID:31044425|PMID:31572191|PMID:36304064|PMID:36329616|PMID:37344829|PMID:7635464|PMID:7757070|PMID:7962538
HMBSGreen Monkeyanxiety disorder  ISORGD:7330958554872ClinVar Annotator: match by term: AnxietyClinVarPMID:25741868
HMBSGreen MonkeyCD3epsilon deficiency  ISORGD:7330958554872ClinVar Annotator: match by term: CD3epsilon deficiencyClinVarPMID:14602880|PMID:15546002|PMID:1635567|PMID:17277165|PMID:24216686|PMID:24910257|PMID:25373860|PMID:26822028|PMID:28492532|PMID:8490660
HMBSGreen Monkeychromosome 11 partial duplication syndrome  ISORGD:7330958554872ClinVar Annotator: match by term: Distal trisomy 11qClinVarPMID:25741868
HMBSGreen Monkeycongenital disorder of glycosylation  ISORGD:7330958554872ClinVar Annotator: match by term: Carbohydrate-deficient glycoprotein syndrome | ClinVar Annotator: match by term: Congenital more ...ClinVarPMID:18414213|PMID:25741868|PMID:28492532
HMBSGreen Monkeycongenital disorder of glycosylation Ij  ISORGD:7330958554872ClinVar Annotator: match by term: Congenital disorder of glycosylation type 1JClinVarPMID:18414213|PMID:25741868|PMID:28492532
HMBSGreen Monkeycongenital myasthenic syndrome 13  ISORGD:7330958554872ClinVar Annotator: match by term: Myasthenic syndrome, congenital, 13, with tubular aggregatesClinVarPMID:18414213|PMID:25741868|PMID:28492532
HMBSGreen MonkeyDwarfism  ISORGD:7330958554872ClinVar Annotator: match by term: Short statureClinVarPMID:32581362
HMBSGreen MonkeyENCEPHALOPATHY, PORPHYRIA-RELATED  ISORGD:7330958554872ClinVar Annotator: match by term: Encephalopathy, porphyria-relatedClinVarPMID:10494093|PMID:11055586|PMID:11399210|PMID:12372055|PMID:12773194|PMID:1301948|PMID:1496994|PMID:14970743|PMID:15003823|PMID:15534187|PMID:15643298|PMID:1577472|PMID:19207107|PMID:2243128|PMID:2246851|PMID:2246852|PMID:23815679|PMID:25741868|PMID:26075277|PMID:27539938|PMID:27558376|PMID:27769855|PMID:28492532|PMID:29360981|PMID:30766957|PMID:32197664|PMID:34089223|PMID:35722412|PMID:6985467|PMID:7635464|PMID:7962538|PMID:8270256|PMID:9199558|PMID:9281416
HMBSGreen MonkeyFamilial Atrial Fibrillation 14  ISORGD:7330958554872ClinVar Annotator: match by term: Atrial fibrillation, familial, 14ClinVarPMID:28492532
HMBSGreen Monkeygenetic disease  ISORGD:7330958554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:26795593|PMID:27539938|PMID:28492532
HMBSGreen Monkeyglycogen storage disease Ib  ISORGD:7330958554872ClinVar Annotator: match by term: Glucose-6-phosphate transport defectClinVarPMID:28492532
HMBSGreen Monkeyimmunodeficiency 17  ISORGD:7330958554872ClinVar Annotator: match by term: Immunodeficiency 17 | ClinVar Annotator: match by term: Immunodeficiency 17, more ...ClinVarPMID:14602880|PMID:15546002|PMID:1635567|PMID:17277165|PMID:24216686|PMID:24910257|PMID:25373860|PMID:26822028|PMID:28492532|PMID:8490660
HMBSGreen Monkeyimmunodeficiency 18  ISORGD:7330958554872ClinVar Annotator: match by term: Immunodeficiency 18ClinVarPMID:14602880|PMID:15546002|PMID:1635567|PMID:17277165|PMID:24216686|PMID:24910257|PMID:25373860|PMID:26822028|PMID:28492532|PMID:8490660
HMBSGreen Monkeyimmunodeficiency 19  ISORGD:7330958554872ClinVar Annotator: match by term: Immunodeficiency 19ClinVarPMID:14602880|PMID:15546002|PMID:1635567|PMID:17277165|PMID:24216686|PMID:24910257|PMID:25373860|PMID:26822028|PMID:28492532|PMID:8490660
HMBSGreen Monkeyinflammatory bowel disease 28  ISORGD:7330958554872ClinVar Annotator: match by term: Inflammatory bowel disease 28ClinVarPMID:14602880|PMID:15546002|PMID:1635567|PMID:17277165|PMID:24216686|PMID:24910257|PMID:25373860|PMID:26822028|PMID:28492532|PMID:8490660
HMBSGreen Monkeyisolated microphthalmia 5  ISORGD:7330958554872ClinVar Annotator: match by term: Isolated microphthalmia 5ClinVarPMID:28492532
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMBSGreen Monkeyacute intermittent porphyria  ISORGD:7330957240710 OMIM 
HMBSGreen MonkeyENCEPHALOPATHY, PORPHYRIA-RELATED  ISORGD:7330957240710 OMIM 
HMBSGreen MonkeyLEUKOENCEPHALOPATHY, PORPHYRIA-RELATED  ISORGD:7330957240710 OMIM 


Biological Process
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Object Symbol
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Term
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Source
Original Reference(s)
HMBSGreen Monkeyanimal organ regeneration  ISORGD:28019068941liverRGDPMID:2886336|REF_RGD_ID:4144800
HMBSGreen Monkeyastrocyte differentiation  ISORGD:28019068941 RGDPMID:12917623|REF_RGD_ID:2301689
HMBSGreen Monkeycellular response to amine stimulus  ISORGD:280190689415-aminolevulinic acidRGDPMID:10416273|REF_RGD_ID:2303399
HMBSGreen Monkeycellular response to antibiotic  ISORGD:28019068941ascofuranoneRGDPMID:19688726|REF_RGD_ID:4144778
HMBSGreen Monkeycellular response to arsenic-containing substance  ISORGD:28019068941 RGDPMID:10416273|REF_RGD_ID:2303399
HMBSGreen Monkeycellular response to cytokine stimulus  ISORGD:28019068941erythropoietinRGDPMID:4019471|REF_RGD_ID:4144804
HMBSGreen Monkeycellular response to dexamethasone stimulus  ISORGD:28019068941 RGDPMID:7917467|REF_RGD_ID:4144799
HMBSGreen Monkeycellular response to lead ion  ISORGD:28019068941 RGDPMID:16566714|REF_RGD_ID:4144781
HMBSGreen Monkeyheme A biosynthetic process involved_inIEAUniProtKB:P22907|ensembl:ENSMUSP00000076575150520179 EnsemblGO_REF:0000107
HMBSGreen Monkeyheme B biosynthetic process involved_inIEAUniProtKB:P08397|UniProtKB:P22907|ensembl:ENSMUSP00000076575|ensembl:ENSP00000498786150520179 EnsemblGO_REF:0000107
HMBSGreen Monkeyheme biosynthetic process involved_inIEAUniProtKB:P08397|ensembl:ENSP00000498786150520179 EnsemblGO_REF:0000107
HMBSGreen Monkeyheme biosynthetic process involved_inIEAPANTHER:PTN000168178150520179 TreeGrafterGO_REF:0000118
HMBSGreen Monkeyheme O biosynthetic process involved_inIEAUniProtKB:P22907|ensembl:ENSMUSP00000076575150520179 EnsemblGO_REF:0000107
HMBSGreen Monkeyliver development  ISORGD:28019068941 RGDPMID:971328|REF_RGD_ID:25394583
HMBSGreen Monkeyporphyrin-containing compound biosynthetic process  ISORGD:28019068941Urophorphyrin IRGDPMID:3963818|PMID:6694518|PMID:994723|REF_RGD_ID:25330343|REF_RGD_ID:25440497|REF_RGD_ID:4144803
HMBSGreen Monkeyporphyrin-containing compound biosynthetic process involved_inIEAARBA:ARBA00027896150520179 UniProtGO_REF:0000117
HMBSGreen Monkeyporphyrin-containing compound biosynthetic process involved_inIEAUniProtKB-KW:KW-0627150520179 UniProtGO_REF:0000043
HMBSGreen Monkeyporphyrin-containing compound biosynthetic process  ISORGD:28019068941UroporphyrinogenRGDPMID:3702597|REF_RGD_ID:4144820
HMBSGreen Monkeyporphyrin-containing compound biosynthetic process  ISORGD:28019068941UroporphyrinRGDPMID:1781034|REF_RGD_ID:25440495
HMBSGreen Monkeyporphyrin-containing compound biosynthetic process  ISORGD:28019068941Uroporphyrin IRGDPMID:11202056|PMID:3179323|PMID:6893114|PMID:971328|REF_RGD_ID:2301707|REF_RGD_ID:25394583|REF_RGD_ID:26923963|REF_RGD_ID:4144783
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Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMBSGreen Monkeyaxon  ISORGD:28019068941MMO:0000498RGDPMID:11202056|REF_RGD_ID:4144783
HMBSGreen Monkeycondensed chromosome located_inISORGD:28019068941strong staining of metaphase and anaphase chromatidsRGDPMID:12917623|REF_RGD_ID:2301689
HMBSGreen Monkeycytoplasm located_inIEAPANTHER:PTN000168178150520179 TreeGrafterGO_REF:0000118
HMBSGreen Monkeycytosol is_active_inIEAUniProtKB:P22907|ensembl:ENSMUSP00000076575150520179 EnsemblGO_REF:0000107
HMBSGreen Monkeyperinuclear region of cytoplasm  ISORGD:28019068941MMO:0000498RGDPMID:11202056|REF_RGD_ID:4144783

Molecular Function
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Object Symbol
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Original Reference(s)
HMBSGreen Monkeyamine binding  ISOCHEBI:173819068941substrate porphobilinogen bindingRGDPMID:9344466|REF_RGD_ID:2301695
HMBSGreen Monkeycarboxylic acid binding  ISOCHEBI:173819068941substrate porphobilinogen bindingRGDPMID:9344466|REF_RGD_ID:2301695
HMBSGreen Monkeyhydroxymethylbilane synthase activity  ISORGD:28019068941 RGDPMID:12127573|PMID:1386052|PMID:18760440|PMID:3179323|PMID:3702597|PMID:3963818|PMID:593266|PMID:6712591|PMID:9344466|PMID:971328|PMID:994723|REF_RGD_ID:2301691|REF_RGD_ID:2301695|REF_RGD_ID:2301704|REF_RGD_ID:2301707|REF_RGD_ID:2301858|REF_RGD_ID:25394583|REF_RGD_ID:25440496|REF_RGD_ID:25440497|REF_RGD_ID:26884337|REF_RGD_ID:4144803|REF_RGD_ID:4144820
HMBSGreen Monkeyhydroxymethylbilane synthase activity enablesIEAUniProtKB:P08397|UniProtKB:P22907|ensembl:ENSMUSP00000076575|ensembl:ENSP00000498786150520179 EnsemblGO_REF:0000107
HMBSGreen Monkeyhydroxymethylbilane synthase activity enablesIEAPANTHER:PTN000168178150520179 TreeGrafterGO_REF:0000118
HMBSGreen Monkeyhydroxymethylbilane synthase activity enablesIEAInterPro:IPR000860|InterPro:IPR022417|InterPro:IPR022418|InterPro:IPR022419|InterPro:IPR036803150520179 InterProGO_REF:0000002
HMBSGreen Monkeyhydroxymethylbilane synthase activity enablesIEAEC:2.5.1.61150520179 UniProtGO_REF:0000003
HMBSGreen Monkeyhydroxymethylbilane synthase activity enablesIEAARBA:ARBA00028611150520179 UniProtGO_REF:0000117
HMBSGreen Monkeyprotein binding  ISORGD:16175689068941 RGDPMID:12917623|REF_RGD_ID:2301689
HMBSGreen Monkeyprotein binding enablesISOUniProtKB:Q9NRD59068941 PMID:32296183IntActPMID:32296183
HMBSGreen Monkeyprotein binding enablesISOUniProtKB:P428589068941 PMID:32814053IntActPMID:32814053
HMBSGreen Monkeytransferase activity enablesIEAUniProtKB-KW:KW-0808150520179 UniProtGO_REF:0000043
HMBSGreen Monkeyuroporphyrinogen-III synthase activity  ISORGD:28019068941in the presence of tetrahydropteroylglutamateRGDPMID:6466301|REF_RGD_ID:2303402
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RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMBSGreen Monkeyheme biosynthetic pathway   ISORGD:28019068941 RGDPMID:1781034|PMID:593266|PMID:6694518|PMID:6712591|PMID:6893114|REF_RGD_ID:2301704|REF_RGD_ID:25330343|REF_RGD_ID:25440495|REF_RGD_ID:26884337|REF_RGD_ID:26923963
HMBSGreen Monkeyheme biosynthetic pathway   ISORGD:7330959068941 RGDPMID:16839620|PMID:26785297|REF_RGD_ID:11554188|REF_RGD_ID:4144542

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HMBSGreen Monkeyacute intermittent porphyria pathway  ISORGD:7330959068941 SMPDBSMP:00344
HMBSGreen Monkeyerythropoietic porphyria pathway  ISORGD:7330959068941 SMPDBSMP:00345
HMBSGreen Monkeyhereditary coproporphyria pathway  ISORGD:7330959068941 SMPDBSMP:00342
HMBSGreen Monkeyporphyrin metabolic pathway  ISORGD:7330959068941 SMPDBSMP:00024
HMBSGreen Monkeyvariegate porphyria pathway  ISORGD:7330959068941 SMPDBSMP:00346
PMID:22301074   PMID:30032202  



HMBS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,457,799 - 110,466,361 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,457,537 - 110,466,095 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,567,851 - 15,576,221 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HMBS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,084,881 - 119,093,549 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,084,866 - 119,093,834 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,955,591 - 118,964,259 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,460,797 - 118,469,469 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411118,460,802 - 118,469,467NCBI
Celera11116,113,008 - 116,121,673 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,895,043 - 114,903,707 (+)NCBIHuRef
CHM1_111118,841,878 - 118,850,561 (+)NCBICHM1_1
T2T-CHM13v2.011119,105,272 - 119,113,932 (+)NCBIT2T-CHM13v2.0
Hmbs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,247,645 - 44,255,525 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,247,636 - 44,255,525 (-)EnsemblGRCm39 Ensembl
GRCm38944,336,348 - 44,344,228 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,336,339 - 44,344,228 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,144,431 - 44,152,311 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,087,343 - 44,095,170 (-)NCBIMGSCv36mm8
Celera941,591,069 - 41,599,175 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Hmbs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,570,364 - 53,577,758 (-)NCBIGRCr8
mRatBN7.2844,673,554 - 44,680,950 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,673,554 - 44,680,957 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,169,431 - 50,176,911 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,448,147 - 48,455,627 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,318,525 - 46,325,957 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,667,278 - 48,674,673 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,667,275 - 48,674,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,286,249 - 47,293,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,314,235 - 47,321,604 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,323,010 - 47,328,455 (-)NCBI
Celera844,259,787 - 44,267,156 (-)NCBICelera
RH 3.4 Map8428.0RGD
Cytogenetic Map8q22NCBI
Hmbs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,192,522 - 20,202,635 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,192,519 - 20,202,635 (+)NCBIChiLan1.0ChiLan1.0
HMBS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,789,723 - 119,798,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,893,421 - 120,902,024 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,923,004 - 113,931,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,852,295 - 117,860,757 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,852,295 - 117,860,757 (+)Ensemblpanpan1.1panPan2
HMBS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,767,306 - 14,775,205 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,767,666 - 14,775,082 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,820,660 - 14,828,175 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,710,999 - 14,718,527 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,710,641 - 14,718,554 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1514,849,036 - 14,856,511 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,753,058 - 14,760,536 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,793,431 - 14,800,910 (-)NCBIUU_Cfam_GSD_1.0
Hmbs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,116,546 - 101,124,682 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365424,037,201 - 4,050,810 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365424,037,888 - 4,046,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMBS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,300,050 - 46,308,868 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,300,039 - 46,308,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,335,231 - 51,343,641 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Hmbs
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,467,533 - 14,474,954 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,467,515 - 14,474,954 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in HMBS
146 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20



Ensembl Acc Id: ENSCSAT00000000553   ⟹   ENSCSAP00000015508
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1110,457,537 - 110,466,095 (+)Ensembl
RefSeq Acc Id: XM_008021151   ⟹   XP_008019342
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11110,457,799 - 110,466,361 (+)NCBI
Vero_WHO_p1.0NW_02366604315,567,851 - 15,576,219 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008021152   ⟹   XP_008019343
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11110,458,163 - 110,466,361 (+)NCBI
Vero_WHO_p1.0NW_02366604315,567,851 - 15,576,221 (-)NCBI
Sequence:
1 to 10 of 10 rows
Protein RefSeqs XP_008019342 (Get FASTA)   NCBI Sequence Viewer  
  XP_008019343 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015508
  ENSCSAP00000015508.1
GenBank Protein QOY25023 (Get FASTA)   NCBI Sequence Viewer  
  UNY86223 (Get FASTA)   NCBI Sequence Viewer  
  UNY86224 (Get FASTA)   NCBI Sequence Viewer  
  UNY86225 (Get FASTA)   NCBI Sequence Viewer  
  UNY86226 (Get FASTA)   NCBI Sequence Viewer  
  UNY86227 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: XP_008019342   ⟸   XM_008021151
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S3R9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008019343   ⟸   XM_008021152
- Peptide Label: isoform X1
Ensembl Acc Id: ENSCSAP00000015508   ⟸   ENSCSAT00000000553



1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000002535 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000553.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.160.40 UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/TrEMBL
InterPro HemC UniProtKB/TrEMBL
  Porphobilin_deaminase_cofac_BS UniProtKB/TrEMBL
  Porphobilin_deaminase_N UniProtKB/TrEMBL
  Porphobilinogen_deaminase_C UniProtKB/TrEMBL
  Porphobilinogen_deaminase_C_sf UniProtKB/TrEMBL
KEGG Report csab:103248618 UniProtKB/TrEMBL
NCBI Gene HMBS ENTREZGENE
PANTHER PORPHOBILINOGEN DEAMINASE UniProtKB/TrEMBL
  PTHR11557 UniProtKB/TrEMBL
Pfam Porphobil_deam UniProtKB/TrEMBL
  Porphobil_deamC UniProtKB/TrEMBL
PIRSF 4pyrrol_synth_OHMeBilane_synth UniProtKB/TrEMBL
PRINTS PORPHBDMNASE UniProtKB/TrEMBL
PROSITE PORPHOBILINOGEN_DEAM UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/TrEMBL
  SSF54782 UniProtKB/TrEMBL
UniProt A0A0D9S3R9 ENTREZGENE, UniProtKB/TrEMBL
  A0A872YPU0_CHLSB UniProtKB/TrEMBL
1 to 22 of 22 rows