AIRE (autoimmune regulator) - Rat Genome Database

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Gene: AIRE (autoimmune regulator) Chlorocebus sabaeus
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Symbol: AIRE
Name: autoimmune regulator
RGD ID: 18434515
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN humoral immune response (ortholog); negative thymic T cell selection (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autoimmune polyendocrine syndrome (ortholog); autoimmune polyendocrine syndrome type 1 (ortholog); FOUND IN cytoplasm (inferred); female germ cell nucleus (inferred); male germ cell nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1288,019,122 - 88,031,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl288,019,522 - 88,031,801 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605416,133,673 - 16,147,350 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AIRE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1288,019,122 - 88,031,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl288,019,522 - 88,031,801 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605416,133,673 - 16,147,350 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AIRE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382144,285,876 - 44,298,648 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2144,285,838 - 44,298,648 (+)EnsemblGRCh38hg38GRCh38
GRCh372145,705,759 - 45,718,531 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362144,530,191 - 44,542,530 (+)NCBINCBI36Build 36hg18NCBI36
Build 342144,534,575 - 44,542,300NCBI
Celera2130,811,017 - 30,823,364 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,076,211 - 31,088,675 (+)NCBIHuRef
CHM1_12145,266,544 - 45,278,925 (+)NCBICHM1_1
T2T-CHM13v2.02142,639,932 - 42,652,704 (+)NCBIT2T-CHM13v2.0
Aire
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,865,856 - 77,879,444 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,865,856 - 77,879,444 (-)EnsemblGRCm39 Ensembl
GRCm381078,030,022 - 78,043,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1078,030,022 - 78,043,610 (-)EnsemblGRCm38mm10GRCm38
MGSCv371077,492,776 - 77,506,325 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361077,433,160 - 77,446,709 (-)NCBIMGSCv36mm8
Celera1079,069,034 - 79,082,580 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Aire
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82010,635,775 - 10,650,709 (+)NCBIGRCr8
mRatBN7.22010,636,058 - 10,651,060 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2010,636,123 - 10,651,060 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2011,335,440 - 11,350,201 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02010,696,343 - 10,711,104 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02011,168,390 - 11,183,326 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02011,365,630 - 11,380,636 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2011,365,697 - 11,380,631 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02013,535,776 - 13,550,486 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42010,980,031 - 10,996,102 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12010,980,315 - 10,996,140 (+)NCBI
Celera2012,141,888 - 12,156,863 (+)NCBICelera
Cytogenetic Map20p12NCBI
Aire
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540741,157,484 - 41,165,014 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540741,157,503 - 41,165,032 (-)NCBIChiLan1.0ChiLan1.0
AIRE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22240,293,363 - 40,306,567 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,143,474 - 35,157,937 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02130,543,018 - 30,556,225 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12143,837,170 - 43,849,830 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2143,837,340 - 43,848,974 (+)Ensemblpanpan1.1panPan2
AIRE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,139,513 - 38,149,294 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3138,139,099 - 38,149,296 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3137,296,701 - 37,307,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03137,686,832 - 37,697,601 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3137,686,636 - 37,696,584 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13137,553,994 - 37,564,750 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03137,534,760 - 37,545,522 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03138,032,729 - 38,043,507 (+)NCBIUU_Cfam_GSD_1.0
Aire
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497137,330,752 - 37,342,258 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936500125,795 - 137,056 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936500125,589 - 137,071 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AIRE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13207,148,401 - 207,158,346 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113207,148,401 - 207,158,355 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213217,028,220 - 217,038,176 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Aire
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474529,850,560 - 29,857,029 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474529,850,410 - 29,857,351 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AIRE
293 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
74 34 19 33 33 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000005871   ⟹   ENSCSAP00000004087
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl288,019,522 - 88,031,801 (+)Ensembl
RefSeq Acc Id: XM_007969822   ⟹   XP_007968013
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1288,019,278 - 88,031,998 (+)NCBI
Vero_WHO_p1.0NW_02366605416,133,673 - 16,147,350 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007968013 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004087.1
RefSeq Acc Id: XP_007968013   ⟸   XM_007969822
- UniProtKB: A0A0D9R648 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000004087   ⟸   ENSCSAT00000005871


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007836 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005871.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.390.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro AIRE UniProtKB/TrEMBL
  AIRE_PHD2 UniProtKB/TrEMBL
  HSR_dom UniProtKB/TrEMBL
  SAND-like_dom_sf UniProtKB/TrEMBL
  SAND_dom UniProtKB/TrEMBL
  Sp110/Sp140/Sp140L-like UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene AIRE ENTREZGENE
PANTHER NUCLEAR BODY PROTEIN SP140 UniProtKB/TrEMBL
  RIKEN CDNA A630001G21 GENE UniProtKB/TrEMBL
Pfam HSR UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  SAND UniProtKB/TrEMBL
PRINTS AIREGULATOR UniProtKB/TrEMBL
PROSITE HSR UniProtKB/TrEMBL
  SAND UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
  SAND UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
  SSF63763 UniProtKB/TrEMBL
UniProt A0A0D9R648 ENTREZGENE, UniProtKB/TrEMBL