TPM2P1 (TPM2 pseudogene 1) - Rat Genome Database

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Gene: TPM2P1 (TPM2 pseudogene 1) Homo sapiens
Analyze
Symbol: TPM2P1
Name: TPM2 pseudogene 1
RGD ID: 16556379
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: LOC100130620; tropomyosin 2 (beta) (TPM2) pseudogene; tropomyosin 2 pseudogene; Z83313.1
Related Functional Gene: TPM2  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X138,806,374 - 138,807,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX138,806,374 - 138,807,091 (+)EnsemblGRCh38hg38GRCh38
GRCh37X137,888,536 - 137,889,292 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic MapXq26.3NCBI
HuRefX127,156,301 - 127,157,057 (+)NCBIHuRef
CHM1_1X137,799,662 - 137,800,418 (+)NCBICHM1_1
T2T-CHM13v2.0X137,116,814 - 137,117,570 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:235
Interacting mature miRNAs:243
Transcripts:ENST00000433780
Prediction methods:Microtar, Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 7 3 4 8 6 1 33 11 20 1 196 5 7 4 28
Below cutoff 586 325 239 152 280 35 1316 603 587 83 537 209 117 424 904

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000433780
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX138,806,374 - 138,807,091 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TPM2P1 COSMIC
Ensembl Genes ENSG00000235975 Ensembl, ENTREZGENE
GTEx ENSG00000235975 GTEx
Human Proteome Map TPM2P1 Human Proteome Map
NCBI Gene LOC100130620 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-13 TPM2P1  TPM2 pseudogene 1  Z83313.1  tropomyosin 2 (beta) (TPM2) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 Z83313.1  tropomyosin 2 (beta) (TPM2) pseudogene  LOC100130620  tropomyosin 2 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100130620  tropomyosin 2 pseudogene  Z83313.1  tropomyosin 2 (beta) (TPM2) pseudogene  Symbol and/or name change 5135510 APPROVED