PRSS59P (serine protease 59, pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: PRSS59P (serine protease 59, pseudogene) Homo sapiens
Analyze
Symbol: PRSS59P
Name: serine protease 59, pseudogene
RGD ID: 16550908
HGNC Page HGNC:43791
Description: Predicted to be located in Golgi apparatus.
Type: pseudo (Ensembl: transcribed_unitary_pseudogene)
RefSeq Status: VALIDATED
Previously known as: AC245088.1; TRY2P; trypsinogen-like pseudogene; Tryx5
RGD Orthologs
Mouse
Alliance Genes
More Info more info ...
Related Functional Gene: PRSS58  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,268,284 - 142,272,249 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,265,833 - 142,271,301 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,268,284 - 142,272,235 (-)EnsemblGRCh38hg38GRCh38
GRCh377141,968,101 - 141,972,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q34NCBI
HuRef7136,260,388 - 136,265,868 (-)NCBIHuRef
CHM1_17141,899,802 - 141,905,270 (-)NCBICHM1_1
T2T-CHM13v2.07143,583,342 - 143,587,309 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:8650574   PMID:12477932   PMID:25416956  


Genomics

Comparative Map Data
PRSS59P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,268,284 - 142,272,249 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,265,833 - 142,271,301 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,268,284 - 142,272,235 (-)EnsemblGRCh38hg38GRCh38
GRCh377141,968,101 - 141,972,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q34NCBI
HuRef7136,260,388 - 136,265,868 (-)NCBIHuRef
CHM1_17141,899,802 - 141,905,270 (-)NCBICHM1_1
T2T-CHM13v2.07143,583,342 - 143,587,309 (-)NCBIT2T-CHM13v2.0
Prss59
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39640,897,371 - 40,917,975 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl640,897,371 - 40,917,491 (-)EnsemblGRCm39 Ensembl
GRCm38640,920,437 - 40,941,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl640,920,437 - 40,940,557 (-)EnsemblGRCm38mm10GRCm38
MGSCv37640,870,459 - 40,890,556 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36640,850,067 - 40,870,164 (-)NCBIMGSCv36mm8
Celera640,901,445 - 40,921,535 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map618.97NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:153
Interacting mature miRNAs:154
Transcripts:ENST00000334288, ENST00000448860
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 20
Low 1 1 1 2 2 1 4 1 357 2
Below cutoff 228 387 178 53 386 17 347 128 848 22 261 120 36 74 236

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000448860
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7142,265,833 - 142,271,301 (-)Ensembl
RefSeq Acc Id: ENST00000616556
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7142,268,284 - 142,272,235 (-)Ensembl
RefSeq Acc Id: NR_036483
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387142,268,284 - 142,272,249 (-)NCBI
T2T-CHM13v2.07143,583,342 - 143,587,309 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein AAH39387 (Get FASTA)   NCBI Sequence Viewer  
  AAH47233 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:43791 AgrOrtholog
COSMIC PRSS59P COSMIC
Ensembl Genes ENSG00000186163 Ensembl
  ENSG00000293407 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000616556 ENTREZGENE
GTEx ENSG00000186163 GTEx
  ENSG00000293407 GTEx
HGNC ID HGNC:43791 ENTREZGENE
Human Proteome Map PRSS59P Human Proteome Map
NCBI Gene TRY2P ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-04-12 PRSS59P  serine protease 59, pseudogene  TRY2P  trypsinogen-like pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-08-20 TRY2P  trypsinogen-like pseudogene  AC245088.1  trypsinogen-like pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-25 AC245088.1  trypsinogen-like pseudogene  TRY2P  trypsinogen-like pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 TRY2P  trypsinogen-like pseudogene  AC245088.1  trypsinogen-like pseudogene  Symbol and/or name change 5135510 APPROVED