Or3a1d (olfactory receptor family 3 subfamily A member 1D) - Rat Genome Database

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Gene: Or3a1d (olfactory receptor family 3 subfamily A member 1D) Mus musculus
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Symbol: Or3a1d
Name: olfactory receptor family 3 subfamily A member 1D
RGD ID: 1623745
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including OR3A3 (olfactory receptor family 3 subfamily A member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2P1NL-4481525-4480578; MOR255; MOR255-3; olfactory receptor 411; olfactory receptor MOR255-3; olfactory receptor MOR255-6; Olfr411; RP23-20M18.13
RGD Orthologs
Human
Bonobo
Dog
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,237,450 - 74,238,498 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1174,235,955 - 74,243,476 (-)EnsemblGRCm39 Ensembl
GRCm381174,346,624 - 74,347,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,345,129 - 74,352,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,160,126 - 74,161,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361174,162,842 - 74,163,777 (-)NCBIMGSCv36mm8
Celera1181,857,196 - 81,858,244 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or3a1dMouse(+)-catechin multiple interactionsISOOR3A3 (Homo sapiens)6480464[Catechin co-treated with Grape Seed Proanthocyanidins] results in increased expression of OR3A3 mRNACTDPMID:24763279
Or3a1dMouse3,4-methylenedioxymethamphetamine decreases expressionEXP 6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of OR3A1D mRNACTDPMID:20188158
Or3a1dMouseAzoxymethane multiple interactionsEXP 6480464[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of OR3A1D mRNACTDPMID:29950665
Or3a1dMousecadmium atom multiple interactionsISOOR3A3 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of OR3A3 mRNACTDPMID:35301059
Or3a1dMousecadmium dichloride multiple interactionsISOOR3A3 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of OR3A3 mRNACTDPMID:35301059
Or3a1dMousedextran sulfate multiple interactionsEXP 6480464[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of OR3A1D mRNACTDPMID:29950665
Or3a1dMousefolic acid increases expressionEXP 6480464Folic Acid results in increased expression of OR3A1D mRNACTDPMID:25629700
Or3a1dMousefolic acid decreases expressionISOOR3A3 (Homo sapiens)6480464Folic Acid results in decreased expression of OR3A3 mRNACTDPMID:21867686
Or3a1dMousepirinixic acid decreases expressionEXP 6480464pirinixic acid results in decreased expression of OR3A1D mRNACTDPMID:20813756
Or3a1dMousepropanal decreases expressionISOOR3A3 (Homo sapiens)6480464propionaldehyde results in decreased expression of OR3A3 mRNACTDPMID:26079696
Or3a1dMouseTheaflavin 3,3'-digallate affects expressionISOOR3A3 (Homo sapiens)6480464theaflavin-3 and 3'-digallate affects the expression of OR3A3 mRNACTDPMID:34925699
Or3a1dMousetitanium dioxide multiple interactionsEXP 6480464[titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of OR3A1D mRNACTDPMID:29950665

1 to 12 of 12 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or3a1dMouseG protein-coupled receptor signaling pathway acts_upstream_of_or_withinISAprotein_id:AAF033272290270 PMID:14611657MGIPMID:14611657
Or3a1dMousesensory perception of smell acts_upstream_of_or_withinISAprotein_id:AAF033272290270 PMID:14611657MGIPMID:14611657
Or3a1dMousesignal transduction involved_inIBAPANTHER:PTN001239850 and UniProtKB:P349822290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or3a1dMousemembrane located_inISAprotein_id:AAF033272290270 PMID:14611657MGIPMID:14611657
Or3a1dMouseplasma membrane is_active_inIBAPANTHER:PTN001239850 and UniProtKB:A6NND42290270 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or3a1dMouseolfactory receptor activity enablesIBAPANTHER:PTN001239850 more ...2290270 GO_CentralGO_REF:0000033
Or3a1dMouseolfactory receptor activity enablesISAprotein_id:AAF033272290270 PMID:14611657MGIPMID:14611657


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21267068   PMID:21873635   PMID:32295537  



Or3a1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,237,450 - 74,238,498 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1174,235,955 - 74,243,476 (-)EnsemblGRCm39 Ensembl
GRCm381174,346,624 - 74,347,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,345,129 - 74,352,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv371174,160,126 - 74,161,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361174,162,842 - 74,163,777 (-)NCBIMGSCv36mm8
Celera1181,857,196 - 81,858,244 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1145.76NCBI
OR3A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,411,370 - 3,424,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,411,370 - 3,424,070 (+)EnsemblGRCh38hg38GRCh38
GRCh37173,314,664 - 3,327,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,270,612 - 3,271,577 (+)NCBINCBI36Build 36hg18NCBI36
Build 34173,270,611 - 3,271,577NCBI
Celera173,337,601 - 3,338,566 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,216,371 - 3,217,336 (+)NCBIHuRef
CHM1_1173,333,494 - 3,334,459 (+)NCBICHM1_1
T2T-CHM13v2.0173,300,315 - 3,312,995 (+)NCBIT2T-CHM13v2.0
LOC100973249
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21911,030,257 - 11,037,351 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11712,996,680 - 13,003,777 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,430,550 - 3,444,031 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1173,469,685 - 3,470,797 (+)NCBIpanpan1.1PanPan1.1panPan2
OR3A1H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1947,224,385 - 47,225,332 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl947,224,385 - 47,225,639 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha946,376,958 - 46,377,905 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0948,060,139 - 48,061,086 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl948,060,139 - 48,061,086 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1946,823,776 - 46,824,723 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0947,117,897 - 47,118,844 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0947,173,679 - 47,174,626 (-)NCBIUU_Cfam_GSD_1.0
LOC103242152
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,922,239 - 2,923,732 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl162,922,046 - 2,923,505 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605918,970,795 - 18,971,841 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.

Predicted Target Of
Summary Value
Count of predictions:255
Count of miRNA genes:229
Interacting mature miRNAs:242
Transcripts:ENSMUST00000080365, ENSMUST00000141134
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 51 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse

1 to 10 of 51 rows
UniSTS:489415  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,346,647 - 74,347,582UniSTSGRCm38
MGSCv371174,160,149 - 74,161,084UniSTSGRCm37
Celera1181,857,219 - 81,858,154UniSTS
Cytogenetic Map11B4UniSTS
UniSTS:495629  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,346,624 - 74,347,672UniSTSGRCm38
MGSCv371174,160,126 - 74,161,174UniSTSGRCm37
Celera1181,857,196 - 81,858,244UniSTS
Cytogenetic Map11B4UniSTS







Ensembl Acc Id: ENSMUST00000080365   ⟹   ENSMUSP00000079235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1174,237,450 - 74,238,498 (-)Ensembl
GRCm38.p6 Ensembl1174,346,624 - 74,347,672 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141134   ⟹   ENSMUSP00000145878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1174,237,718 - 74,243,447 (-)Ensembl
GRCm38.p6 Ensembl1174,346,892 - 74,352,621 (-)Ensembl
Ensembl Acc Id: ENSMUST00000214769   ⟹   ENSMUSP00000149978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1174,235,955 - 74,243,476 (-)Ensembl
GRCm38.p6 Ensembl1174,345,129 - 74,352,650 (-)Ensembl
RefSeq Acc Id: NM_146709   ⟹   NP_666920
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391174,237,450 - 74,238,498 (-)NCBI
GRCm381174,346,624 - 74,347,672 (-)ENTREZGENE
MGSCv371174,160,126 - 74,161,174 (-)RGD
Celera1181,857,196 - 81,858,244 (-)RGD
cM Map11 ENTREZGENE
Sequence:
1 to 10 of 10 rows
Protein RefSeqs NP_666920 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI38440 (Get FASTA)   NCBI Sequence Viewer  
  AAI38441 (Get FASTA)   NCBI Sequence Viewer  
  AAL61049 (Get FASTA)   NCBI Sequence Viewer  
  AAP70933 (Get FASTA)   NCBI Sequence Viewer  
  EDL12769 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000079235
  ENSMUSP00000079235.4
  ENSMUSP00000145878.2
  ENSMUSP00000149978.2
1 to 10 of 10 rows
RefSeq Acc Id: NP_666920   ⟸   NM_146709
- UniProtKB: Q7TRW8 (UniProtKB/TrEMBL),   Q8VFX9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000079235   ⟸   ENSMUST00000080365
Ensembl Acc Id: ENSMUSP00000145878   ⟸   ENSMUST00000141134
Ensembl Acc Id: ENSMUSP00000149978   ⟸   ENSMUST00000214769
G-protein coupled receptors family 1 profile

Name Modeler Protein Id AA Range Protein Structure
AF-Q7TRW8-F1-model_v2 AlphaFold Q7TRW8 1-315 view protein structure



1 to 26 of 26 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000054406 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000080365 ENTREZGENE
  ENSMUST00000080365.6 UniProtKB/TrEMBL
  ENSMUST00000141134.2 UniProtKB/TrEMBL
  ENSMUST00000214769.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR UniProtKB/TrEMBL
KEGG Report mmu:258704 UniProtKB/TrEMBL
MGD MGI:3030245 ENTREZGENE
NCBI Gene 258704 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
  7tm_4 UniProtKB/TrEMBL
PhenoGen Or3a1d PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0U1RP86_MOUSE UniProtKB/TrEMBL
  Q7TRW8 ENTREZGENE, UniProtKB/TrEMBL
  Q8VFX9 ENTREZGENE, UniProtKB/TrEMBL
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or3a1d  olfactory receptor family 3 subfamily A member 1D  Olfr411  olfactory receptor 411  Symbol and/or name change 5135510 APPROVED