Ccdc182 (coiled-coil domain containing 182) - Rat Genome Database

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Gene: Ccdc182 (coiled-coil domain containing 182) Mus musculus
Analyze
Symbol: Ccdc182
Name: coiled-coil domain containing 182
RGD ID: 1623143
MGI Page MGI
Description: Involved in female gonad development. Is expressed in central nervous system and genitourinary system. Orthologous to human CCDC182 (coiled-coil domain containing 182).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700106J16Rik; coiled-coil domain-containing protein 182; coiled-coil domain-containing protein ENSP00000299415 homolog; novel tropomyosin domain containing protein; RP24-402O2.1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,184,869 - 88,186,087 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,184,884 - 88,186,087 (+)EnsemblGRCm39 Ensembl
GRCm381188,294,043 - 88,295,261 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,294,058 - 88,295,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv371188,107,545 - 88,108,763 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,107,910 - 88,111,456 (+)NCBIMGSCv36mm8
Celera1197,899,335 - 97,900,551 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:18287559   PMID:19301398   PMID:19334288   PMID:19501082   PMID:21267068  
PMID:21386911   PMID:22496664  


Genomics

Comparative Map Data
Ccdc182
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,184,869 - 88,186,087 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,184,884 - 88,186,087 (+)EnsemblGRCm39 Ensembl
GRCm381188,294,043 - 88,295,261 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,294,058 - 88,295,261 (+)EnsemblGRCm38mm10GRCm38
MGSCv371188,107,545 - 88,108,763 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,107,910 - 88,111,456 (+)NCBIMGSCv36mm8
Celera1197,899,335 - 97,900,551 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.4NCBI
CCDC182
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381757,744,495 - 57,745,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1757,744,495 - 57,745,299 (-)EnsemblGRCh38hg38GRCh38
GRCh371755,821,856 - 55,822,660 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q22NCBI
HuRef1751,182,433 - 51,183,300 (-)NCBIHuRef
CHM1_11755,886,929 - 55,887,796 (-)NCBICHM1_1
T2T-CHM13v2.01758,617,754 - 58,618,558 (-)NCBIT2T-CHM13v2.0
Ccdc182
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81073,587,416 - 73,588,228 (+)NCBIGRCr8
mRatBN7.21073,090,228 - 73,091,040 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,090,194 - 73,091,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1077,702,565 - 77,703,377 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,207,497 - 77,208,309 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01072,670,675 - 72,671,487 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01075,619,867 - 75,621,629 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1075,620,470 - 75,621,258 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01074,487,684 - 74,488,345 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41076,608,459 - 76,608,917 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1071,999,562 - 72,000,374 (+)NCBICelera
Cytogenetic Map10q26NCBI
Ccdc182
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554515,216,761 - 5,218,204 (+)NCBIChiLan1.0ChiLan1.0
CCDC182
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21973,918,794 - 73,919,813 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11778,729,696 - 78,730,715 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01751,822,901 - 51,823,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11756,680,726 - 56,681,562 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1756,681,050 - 56,681,511 (-)Ensemblpanpan1.1panPan2
CCDC182
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1932,461,336 - 32,462,643 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl932,461,679 - 32,462,140 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha931,700,254 - 31,701,456 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0933,269,419 - 33,270,621 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl933,269,762 - 33,270,223 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1932,054,167 - 32,055,369 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0932,337,332 - 32,338,534 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0932,421,248 - 32,422,450 (-)NCBIUU_Cfam_GSD_1.0
Ccdc182
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,800,927 - 31,802,676 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,272,477 - 5,272,938 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364905,272,477 - 5,272,938 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC182
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1234,032,263 - 34,032,724 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11234,032,263 - 34,032,793 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,747,677 - 34,748,564 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC182
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11635,647,441 - 35,649,171 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1635,648,374 - 35,648,832 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660776,466,271 - 6,467,085 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc182
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479512,654,943 - 12,655,404 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479512,650,108 - 12,655,759 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:199
Count of miRNA genes:162
Interacting mature miRNAs:187
Transcripts:ENSMUST00000037268
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
15092049Wsigrme3_mweek six growth rate, maternal effect 3 (mouse)118487732496629512Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
15092057Lgrme3_mlate growth rate, maternal effect 3 (mouse)118487732496629512Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse

Markers in Region
1700106J16Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,294,065 - 88,294,694UniSTSGRCm38
MGSCv371188,107,567 - 88,108,196UniSTSGRCm37
Celera1197,899,357 - 97,899,986UniSTS
Cytogenetic Map11CUniSTS
cM Map11 UniSTS
1700106J16Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381188,294,116 - 88,294,218UniSTSGRCm38
MGSCv371188,107,618 - 88,107,720UniSTSGRCm37
Celera1197,899,408 - 97,899,510UniSTS
Cytogenetic Map11CUniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000037268   ⟹   ENSMUSP00000036503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1188,184,884 - 88,186,087 (+)Ensembl
GRCm38.p6 Ensembl1188,294,058 - 88,295,261 (+)Ensembl
RefSeq Acc Id: NM_028859   ⟹   NP_083135
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391188,184,869 - 88,186,087 (+)NCBI
GRCm381188,294,043 - 88,295,261 (+)ENTREZGENE
MGSCv371188,107,545 - 88,108,763 (+)RGD
Celera1197,899,335 - 97,900,551 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_083135 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB24866 (Get FASTA)   NCBI Sequence Viewer  
  EDL15845 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000036503
  ENSMUSP00000036503.5
GenBank Protein Q9D9C6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_083135   ⟸   NM_028859
- UniProtKB: Q9D9C6 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000036503   ⟸   ENSMUST00000037268

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D9C6-F1-model_v2 AlphaFold Q9D9C6 1-152 view protein structure

Promoters
RGD ID:8676104
Promoter ID:EPDNEW_M16082
Type:multiple initiation site
Name:Ccdc182_1
Description:Mus musculus coiled-coil domain containing 182 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381188,294,058 - 88,294,118EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921547 AgrOrtholog
Ensembl Genes ENSMUSG00000034031 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000037268 ENTREZGENE
  ENSMUST00000037268.6 UniProtKB/Swiss-Prot
InterPro DUF4715 UniProtKB/Swiss-Prot
KEGG Report mmu:74297 UniProtKB/Swiss-Prot
MGD MGI:1921547 ENTREZGENE
NCBI Gene 74297 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 182 UniProtKB/Swiss-Prot
  PTHR37364 UniProtKB/Swiss-Prot
Pfam DUF4715 UniProtKB/Swiss-Prot
PhenoGen Ccdc182 PhenoGen
UniProt CC182_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-18 Ccdc182  coiled-coil domain containing 182  1700106J16Rik  RIKEN cDNA 1700106J16 gene  Symbol and/or name change 5135510 APPROVED