CCDC182 (coiled-coil domain containing 182)

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Gene: CCDC182 (coiled-coil domain containing 182) Sus scrofa

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Symbol:

CCDC182

Name:

coiled-coil domain containing 182

RGD ID:

13868080

Description:

INVOLVED IN female gonad development (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 182

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,032,263 - 34,032,724 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	34,032,263 - 34,032,793 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	34,747,677 - 34,748,564 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

female gonad development (IEA)

References

Genomics

Comparative Map Data

CCDC182
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,032,263 - 34,032,724 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	34,032,263 - 34,032,793 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	34,747,677 - 34,748,564 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC182
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	57,744,495 - 57,745,299 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	57,744,495 - 57,745,299 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	55,821,856 - 55,822,660 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	17	q22	NCBI
HuRef	17	51,182,433 - 51,183,300 (-)	NCBI		HuRef
CHM1_1	17	55,886,929 - 55,887,796 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	58,617,754 - 58,618,558 (-)	NCBI		T2T-CHM13v2.0

Ccdc182
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	88,184,869 - 88,186,087 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	88,184,884 - 88,186,087 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	88,294,043 - 88,295,261 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	88,294,058 - 88,295,261 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	88,107,545 - 88,108,763 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	88,107,910 - 88,111,456 (+)	NCBI		MGSCv36	mm8
Celera	11	97,899,335 - 97,900,551 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	52.4	NCBI

Ccdc182
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,587,416 - 73,588,228 (+)	NCBI		GRCr8
mRatBN7.2	10	73,090,228 - 73,091,040 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	73,090,194 - 73,091,433 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	77,702,565 - 77,703,377 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	77,207,497 - 77,208,309 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	72,670,675 - 72,671,487 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	75,619,867 - 75,621,629 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,620,470 - 75,621,258 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	74,487,684 - 74,488,345 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	76,608,459 - 76,608,917 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	71,999,562 - 72,000,374 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

Ccdc182
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955451	5,216,761 - 5,218,204 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC182
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	73,918,794 - 73,919,813 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	78,729,696 - 78,730,715 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	51,822,901 - 51,823,865 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	56,680,726 - 56,681,562 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	56,681,050 - 56,681,511 (-)	Ensembl	panpan1.1		panPan2

CCDC182
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	32,461,336 - 32,462,643 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	32,461,679 - 32,462,140 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	31,700,254 - 31,701,456 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	33,269,419 - 33,270,621 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	33,269,762 - 33,270,223 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	32,054,167 - 32,055,369 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	32,337,332 - 32,338,534 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	32,421,248 - 32,422,450 (-)	NCBI		UU_Cfam_GSD_1.0

Ccdc182
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	31,800,927 - 31,802,676 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	5,272,477 - 5,272,938 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	5,272,477 - 5,272,938 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC182
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	35,647,441 - 35,649,171 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	35,648,374 - 35,648,832 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	6,466,271 - 6,467,085 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc182
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	12,654,943 - 12,655,404 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	12,650,108 - 12,655,759 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CCDC182
14 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005668957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU914245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000095623 ⟹ ENSSSCP00000077560

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	34,032,263 - 34,032,724 (-)	Ensembl

RefSeq Acc Id:

XM_005668957 ⟹ XP_005669014

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	34,032,263 - 34,032,793 (-)	NCBI

Sequence:

show sequence

TATGTCTCTGCCCTCCCCCTCCCCCAAATTCACTAACCCGGTTTGCTTGGTCCAAACAAAGGTG
ACACCATGGAGCCCCTCTATCAGGCCGGGTCCATTCTCATGAAGGTGAACACTTTACAAGGGAA
GAAGATGGTGGAGAGCGGCCTCCAGTCTGGAGACTTCTCCATCCCCCCATCGTGGGCCTCCTGC
CTCCTGCCACCGGCCGACCTGGAGATCCTGCAGCAGAAGGTGGCCGGGGTGCAGCGGGAGCTGG
AGGACTTTAAGAAGGAGGCACTGAAGGCCATCCATTACCTGGAGGACGCCTTCTGCGAGATGAA
CGGGGCGCTGGCACAGCAAGAGGAGCAGGCAGCCCGCGTGAAGCAGCGGCTGCGAGAGGAGGAG
GACCGTGGCATCGTGCGAAACAAGGTCCTCACCTTCTTGCTGCCCCGAGAGAAGCAGCTCCGGG
AGCACTGCAAGCGCCTGGAGTGCCTGCTGCTGCGCCTGAGCCACGATGCGCTGATCGTCCCCTT
AAAGATCCAGACCCACTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005669014	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000077560
	ENSSSCP00000077560.1
	ENSSSCP00005014219.1
	ENSSSCP00015033476.1
	ENSSSCP00025010401.1
	ENSSSCP00030024557.1
	ENSSSCP00030032417.1
	ENSSSCP00035038967.1
	ENSSSCP00040008422.1
	ENSSSCP00045025498.1
	ENSSSCP00050018065.1
	ENSSSCP00055026487.1
	ENSSSCP00060016707.1
	ENSSSCP00065016990.1
	ENSSSCP00070002185.1

RefSeq Acc Id:	XP_005669014 ⟸ XM_005668957
- UniProtKB:	A0A4X1SIM1 (UniProtKB/TrEMBL), A0A8W4FGX3 (UniProtKB/TrEMBL), A0A8D0PL57 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPLYQAGSILMKVNTLQGKKMVESGLQSGDFSIPPSWASCLLPPADLEILQQKVAGVQRELED FKKEALKAIHYLEDAFCEMNGALAQQEEQAARVKQRLREEEDRGIVRNKVLTFLLPREKQLREH CKRLECLLLRLSHDALIVPLKIQTH hide sequence

Ensembl Acc Id:

ENSSSCP00000077560 ⟸ ENSSSCT00000095623

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000052473	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005015132	UniProtKB/TrEMBL
	ENSSSCG00015061970	UniProtKB/TrEMBL
	ENSSSCG00025018189	UniProtKB/TrEMBL
	ENSSSCG00030038654	UniProtKB/TrEMBL
	ENSSSCG00030051043	UniProtKB/TrEMBL
	ENSSSCG00035068781	UniProtKB/TrEMBL
	ENSSSCG00040015002	UniProtKB/TrEMBL
	ENSSSCG00045021432	UniProtKB/TrEMBL
	ENSSSCG00050032635	UniProtKB/TrEMBL
	ENSSSCG00055016874	UniProtKB/TrEMBL
	ENSSSCG00060029171	UniProtKB/TrEMBL
	ENSSSCG00065029813	UniProtKB/TrEMBL
	ENSSSCG00070001401	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000095623	ENTREZGENE
	ENSSSCT00000095623.1	UniProtKB/TrEMBL
	ENSSSCT00005023638.1	UniProtKB/TrEMBL
	ENSSSCT00015082746.1	UniProtKB/TrEMBL
	ENSSSCT00025024642.1	UniProtKB/TrEMBL
	ENSSSCT00030053791.1	UniProtKB/TrEMBL
	ENSSSCT00030071089.1	UniProtKB/TrEMBL
	ENSSSCT00035092843.1	UniProtKB/TrEMBL
	ENSSSCT00040020155.1	UniProtKB/TrEMBL
	ENSSSCT00045036630.1	UniProtKB/TrEMBL
	ENSSSCT00050043805.1	UniProtKB/TrEMBL
	ENSSSCT00055033266.1	UniProtKB/TrEMBL
	ENSSSCT00060039417.1	UniProtKB/TrEMBL
	ENSSSCT00065040209.1	UniProtKB/TrEMBL
	ENSSSCT00070002620.1	UniProtKB/TrEMBL
InterPro	DUF4715	UniProtKB/TrEMBL
KEGG Report	ssc:102167558	UniProtKB/TrEMBL
NCBI Gene	CCDC182	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 182	UniProtKB/TrEMBL
	PTHR37364	UniProtKB/TrEMBL
Pfam	DUF4715	UniProtKB/TrEMBL
UniProt	A0A4X1SIM1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0PL57	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FGX3	ENTREZGENE
UniProt Secondary	A0A8W4FGX3	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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