Tshz2 (teashirt zinc finger family member 2) - Rat Genome Database

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Gene: Tshz2 (teashirt zinc finger family member 2) Mus musculus
Analyze
Symbol: Tshz2
Name: teashirt zinc finger family member 2
RGD ID: 1622965
MGI Page MGI
Description: Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within regulation of gene expression. Predicted to be active in nucleus. Is expressed in several structures, including forelimb; ganglionic eminence; genitourinary system; heart valve; and limb bud. Orthologous to human TSHZ2 (teashirt zinc finger homeobox 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900073F20Rik; B830045G17; KIAA4248; mKIAA4248; Mtsh; Mtsh2; Sdccag; SDCCAG33-like protein; Sdccag33l; Sdccag33l-pending; serologically defined colon cancer antigen 33 like; teash; teashirt 2; teashirt homolog 2; teashirt2; Tsh; Tsh2; Zfp21; Zfp218; zinc finger protein 218
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392169,474,430 - 169,914,671 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2169,474,933 - 169,913,736 (+)EnsemblGRCm39 Ensembl
GRCm382169,632,509 - 170,072,751 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2169,633,013 - 170,071,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv372169,459,146 - 169,714,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362169,324,881 - 169,579,709 (+)NCBIMGSCv36mm8
Celera2175,582,550 - 175,837,676 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map289.47NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10704881   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11668608   PMID:12466851   PMID:12477932   PMID:12881723  
PMID:14610273   PMID:14645530   PMID:14691545   PMID:14973285   PMID:15489334   PMID:15618518   PMID:15834955   PMID:16141072   PMID:16141073   PMID:16516881   PMID:16631416   PMID:18287559  
PMID:18799693   PMID:19030180   PMID:19343227   PMID:19386638   PMID:19745106   PMID:20615956   PMID:20843830   PMID:21873635   PMID:22174793   PMID:23431145   PMID:24487590   PMID:24997765  
PMID:32325033   PMID:35364055   PMID:35377797   PMID:38355793   PMID:38828908   PMID:39289460  


Genomics

Comparative Map Data
Tshz2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392169,474,430 - 169,914,671 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2169,474,933 - 169,913,736 (+)EnsemblGRCm39 Ensembl
GRCm382169,632,509 - 170,072,751 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2169,633,013 - 170,071,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv372169,459,146 - 169,714,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362169,324,881 - 169,579,709 (+)NCBIMGSCv36mm8
Celera2175,582,550 - 175,837,676 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map289.47NCBI
TSHZ2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382052,972,358 - 53,495,330 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2052,972,358 - 53,495,330 (+)EnsemblGRCh38hg38GRCh38
GRCh372051,588,897 - 52,111,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362051,022,284 - 51,537,372 (+)NCBINCBI36Build 36hg18NCBI36
Celera2048,293,566 - 48,816,556 (+)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2048,335,125 - 48,858,153 (+)NCBIHuRef
CHM1_12051,491,697 - 52,014,652 (+)NCBICHM1_1
T2T-CHM13v2.02054,743,639 - 55,267,611 (+)NCBIT2T-CHM13v2.0
Tshz2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83178,824,221 - 179,271,151 (+)NCBIGRCr8
mRatBN7.23158,405,469 - 158,666,915 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3158,405,423 - 158,850,128 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3162,205,357 - 162,466,861 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03170,704,862 - 170,966,269 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03168,446,206 - 168,707,690 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03166,469,752 - 166,748,558 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3166,743,544 - 166,746,597 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03172,587,735 - 172,864,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3156,961,092 - 157,218,922 (+)NCBICelera
Cytogenetic Map3q42NCBI
Tshz2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554455,384,946 - 5,829,954 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554455,571,587 - 5,830,728 (-)NCBIChiLan1.0ChiLan1.0
TSHZ2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22158,718,991 - 59,252,480 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12058,712,105 - 59,245,600 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02049,313,339 - 49,847,386 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12050,428,040 - 50,957,886 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2050,428,575 - 50,840,968 (+)Ensemblpanpan1.1panPan2
TSHZ2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12439,124,993 - 39,354,202 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2438,995,063 - 39,346,728 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2438,151,415 - 38,593,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02439,621,894 - 40,064,815 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2439,622,518 - 39,882,220 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12438,858,375 - 39,301,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02438,988,874 - 39,430,812 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02439,536,208 - 39,979,552 (+)NCBIUU_Cfam_GSD_1.0
Tshz2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640186,482,662 - 186,908,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365141,936,299 - 2,361,599 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365142,117,409 - 2,362,596 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSHZ2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1754,371,631 - 54,374,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11754,111,262 - 54,374,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21761,049,420 - 61,052,491 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSHZ2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1210,534,064 - 10,755,420 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl210,751,240 - 10,754,329 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605058,774,700 - 59,285,553 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tshz2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247902,709,320 - 3,134,203 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247902,701,417 - 3,134,721 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1137
Count of miRNA genes:602
Interacting mature miRNAs:719
Transcripts:ENSMUST00000109157, ENSMUST00000109159, ENSMUST00000123300, ENSMUST00000140699
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
12910800Pwgrq3_mpre-weaning growth rate QTL 3 (mouse)2160611165169794802Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse
12910810Pwbwq2_mpre-weaning body weight QTL 2 (mouse)2160611165169794802Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
1357685Skts13_mskin tumor sucseptibility 13 (mouse)Not determined2168623533172405326Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse

Markers in Region
UniSTS:234617  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382169,888,253 - 169,888,439UniSTSGRCm38
MGSCv372169,713,753 - 169,713,939UniSTSGRCm37
Celera2175,837,425 - 175,837,611UniSTS
Cytogenetic Map2H3UniSTS
cM Map299.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001363022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_080455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF207880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN459664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN670346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000109157   ⟹   ENSMUSP00000104785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2169,475,596 - 169,730,424 (+)Ensembl
GRCm38.p6 Ensembl2169,633,676 - 169,888,504 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109159   ⟹   ENSMUSP00000104787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2169,474,933 - 169,755,013 (+)Ensembl
GRCm38.p6 Ensembl2169,633,013 - 169,913,093 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123300   ⟹   ENSMUSP00000118550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2169,726,813 - 169,913,736 (+)Ensembl
GRCm38.p6 Ensembl2169,884,893 - 170,071,816 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140699   ⟹   ENSMUSP00000120013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2169,727,755 - 169,755,013 (+)Ensembl
GRCm38.p6 Ensembl2169,885,835 - 169,913,093 (+)Ensembl
Ensembl Acc Id: ENSMUST00000185239   ⟹   ENSMUSP00000140884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2169,726,813 - 169,913,736 (+)Ensembl
GRCm38.p6 Ensembl2169,884,893 - 170,071,816 (+)Ensembl
RefSeq Acc Id: NM_001363022   ⟹   NP_001349951
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,474,628 - 169,914,670 (+)NCBI
GRCm382169,632,509 - 170,072,750 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363023   ⟹   NP_001349952
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,474,628 - 169,755,012 (+)NCBI
GRCm382169,632,509 - 169,913,092 (+)NCBI
Sequence:
RefSeq Acc Id: NM_080455   ⟹   NP_536703
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,474,628 - 169,730,424 (+)NCBI
GRCm382169,632,509 - 169,888,504 (+)NCBI
MGSCv372169,459,146 - 169,714,004 (+)RGD
Celera2175,582,550 - 175,837,676 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_177659   ⟹   NP_808327
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,474,628 - 169,914,670 (+)NCBI
GRCm382169,632,509 - 170,072,750 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499423   ⟹   XP_006499486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,596,633 - 169,755,014 (+)NCBI
GRCm382169,736,654 - 169,913,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499424   ⟹   XP_006499487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,596,633 - 169,914,671 (+)NCBI
GRCm382169,736,654 - 170,072,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499425   ⟹   XP_006499488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,596,633 - 169,755,014 (+)NCBI
GRCm382169,736,655 - 169,913,094 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499426   ⟹   XP_006499489
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,596,633 - 169,914,671 (+)NCBI
GRCm382169,736,655 - 170,072,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250745   ⟹   XP_030106605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,596,633 - 169,730,666 (+)NCBI
GRCm382169,736,655 - 169,888,746 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161701   ⟹   XP_036017594
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392169,474,430 - 169,755,008 (+)NCBI
Sequence:
RefSeq Acc Id: NP_536703   ⟸   NM_080455
- Peptide Label: isoform a
- UniProtKB: Q9JL71 (UniProtKB/Swiss-Prot),   Q6AXH5 (UniProtKB/Swiss-Prot),   Q68FE9 (UniProtKB/Swiss-Prot),   Q5DTF1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006499486   ⟸   XM_006499423
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006499487   ⟸   XM_006499424
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006499489   ⟸   XM_006499426
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006499488   ⟸   XM_006499425
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001349951   ⟸   NM_001363022
- Peptide Label: isoform a
- UniProtKB: Q9JL71 (UniProtKB/Swiss-Prot),   Q6AXH5 (UniProtKB/Swiss-Prot),   Q68FE9 (UniProtKB/Swiss-Prot),   Q5DTF1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_808327   ⟸   NM_177659
- Peptide Label: isoform b
RefSeq Acc Id: NP_001349952   ⟸   NM_001363023
- Peptide Label: isoform a
- UniProtKB: Q9JL71 (UniProtKB/Swiss-Prot),   Q6AXH5 (UniProtKB/Swiss-Prot),   Q68FE9 (UniProtKB/Swiss-Prot),   Q5DTF1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106605   ⟸   XM_030250745
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000140884   ⟸   ENSMUST00000185239
Ensembl Acc Id: ENSMUSP00000120013   ⟸   ENSMUST00000140699
Ensembl Acc Id: ENSMUSP00000104785   ⟸   ENSMUST00000109157
Ensembl Acc Id: ENSMUSP00000104787   ⟸   ENSMUST00000109159
Ensembl Acc Id: ENSMUSP00000118550   ⟸   ENSMUST00000123300
RefSeq Acc Id: XP_036017594   ⟸   XM_036161701
- Peptide Label: isoform X4
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FE9-F1-model_v2 AlphaFold Q68FE9 1-1030 view protein structure

Promoters
RGD ID:6833001
Promoter ID:MM_KWN:33185
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000087966,   ENSMUST00000099062,   ENSMUST00000109159,   NM_080455
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362169,458,081 - 169,458,581 (+)MPROMDB
RGD ID:6879860
Promoter ID:EPDNEW_M3381
Type:multiple initiation site
Name:Tshz2_1
Description:Mus musculus teashirt zinc finger family member 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3382  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382169,633,597 - 169,633,657EPDNEW
RGD ID:6879862
Promoter ID:EPDNEW_M3382
Type:initiation region
Name:Tshz2_2
Description:Mus musculus teashirt zinc finger family member 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M3381  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382169,884,847 - 169,884,907EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2153084 AgrOrtholog
Ensembl Genes ENSMUSG00000047907 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000109157 ENTREZGENE
  ENSMUST00000109157.2 UniProtKB/Swiss-Prot
  ENSMUST00000109159 ENTREZGENE
  ENSMUST00000109159.3 UniProtKB/Swiss-Prot
  ENSMUST00000123300.3 UniProtKB/TrEMBL
  ENSMUST00000140699.2 UniProtKB/TrEMBL
  ENSMUST00000185239.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Teashirt_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:228911 UniProtKB/Swiss-Prot
MGD MGI:2153084 ENTREZGENE
NCBI Gene Tshz2 ENTREZGENE
PANTHER PTHR12487 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12487:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-met UniProtKB/TrEMBL
PhenoGen Tshz2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A087WS38_MOUSE UniProtKB/TrEMBL
  A0A0A0MQI3_MOUSE UniProtKB/TrEMBL
  Q3TSK2_MOUSE UniProtKB/TrEMBL
  Q5DTF1 ENTREZGENE
  Q68FE9 ENTREZGENE
  Q6AXH5 ENTREZGENE
  Q8BIK5_MOUSE UniProtKB/TrEMBL
  Q8BU55_MOUSE UniProtKB/TrEMBL
  Q8K350_MOUSE UniProtKB/TrEMBL
  Q9JL71 ENTREZGENE
  TSH2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary F6XWS4 UniProtKB/TrEMBL
  Q5DTF1 UniProtKB/Swiss-Prot
  Q6AXH5 UniProtKB/Swiss-Prot
  Q9JL71 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Tshz2  teashirt zinc finger family member 2  Sdccag33l-pending  serologically defined colon cancer antigen 33 like  Symbol and/or name change 5135510 APPROVED
2024-08-21 Sdccag33l-pending  serologically defined colon cancer antigen 33 like  Tshz2  teashirt zinc finger family member 2  Symbol and/or name change 5135510 APPROVED