Tshz2 (teashirt zinc finger homeobox 2) - Rat Genome Database

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Gene: Tshz2 (teashirt zinc finger homeobox 2) Chinchilla lanigera
Analyze
Symbol: Tshz2
Name: teashirt zinc finger homeobox 2
RGD ID: 8824239
Description: INVOLVED IN regulation of gene expression (ortholog); ASSOCIATED WITH amenorrhea (ortholog); COVID-19 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: teashirt homolog 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554455,384,946 - 5,829,954 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554455,571,587 - 5,830,728 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tshz2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554455,384,946 - 5,829,954 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554455,571,587 - 5,830,728 (-)NCBIChiLan1.0ChiLan1.0
TSHZ2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382052,972,358 - 53,495,330 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2052,972,358 - 53,495,330 (+)EnsemblGRCh38hg38GRCh38
GRCh372051,588,897 - 52,111,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362051,022,284 - 51,537,372 (+)NCBINCBI36Build 36hg18NCBI36
Celera2048,293,566 - 48,816,556 (+)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2048,335,125 - 48,858,153 (+)NCBIHuRef
CHM1_12051,491,697 - 52,014,652 (+)NCBICHM1_1
T2T-CHM13v2.02054,743,639 - 55,267,611 (+)NCBIT2T-CHM13v2.0
Tshz2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392169,474,430 - 169,914,671 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2169,474,933 - 169,913,736 (+)EnsemblGRCm39 Ensembl
GRCm382169,632,509 - 170,072,751 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2169,633,013 - 170,071,816 (+)EnsemblGRCm38mm10GRCm38
MGSCv372169,459,146 - 169,714,004 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362169,324,881 - 169,579,709 (+)NCBIMGSCv36mm8
Celera2175,582,550 - 175,837,676 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map289.47NCBI
Tshz2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83178,824,221 - 179,271,151 (+)NCBIGRCr8
mRatBN7.23158,405,469 - 158,666,915 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3158,405,423 - 158,850,128 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3162,205,357 - 162,466,861 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03170,704,862 - 170,966,269 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03168,446,206 - 168,707,690 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03166,469,752 - 166,748,558 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3166,743,544 - 166,746,597 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03172,587,735 - 172,864,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3156,961,092 - 157,218,922 (+)NCBICelera
Cytogenetic Map3q42NCBI
TSHZ2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22158,718,991 - 59,252,480 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12058,712,105 - 59,245,600 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02049,313,339 - 49,847,386 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12050,428,040 - 50,957,886 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2050,428,575 - 50,840,968 (+)Ensemblpanpan1.1panPan2
TSHZ2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12439,124,993 - 39,354,202 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2438,995,063 - 39,346,728 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2438,151,415 - 38,593,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02439,621,894 - 40,064,815 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2439,622,518 - 39,882,220 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12438,858,375 - 39,301,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02438,988,874 - 39,430,812 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02439,536,208 - 39,979,552 (+)NCBIUU_Cfam_GSD_1.0
Tshz2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640186,482,662 - 186,908,990 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365141,936,299 - 2,361,599 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365142,117,409 - 2,362,596 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSHZ2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1754,371,631 - 54,374,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11754,111,262 - 54,374,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21761,049,420 - 61,052,491 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSHZ2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1210,534,064 - 10,755,420 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl210,751,240 - 10,754,329 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605058,774,700 - 59,285,553 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tshz2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247902,709,320 - 3,134,203 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247902,701,417 - 3,134,721 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014068   ⟹   ENSCLAP00000013912
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554455,384,946 - 5,575,188 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000014069   ⟹   ENSCLAP00000013913
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554455,550,841 - 5,574,234 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000014070   ⟹   ENSCLAP00000013914
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554455,573,491 - 5,829,954 (-)Ensembl
RefSeq Acc Id: XM_005392287   ⟹   XP_005392344
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554455,571,587 - 5,830,728 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005392344 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013912.1
  ENSCLAP00000013913.1
  ENSCLAP00000013914
  ENSCLAP00000013914.1
Reference Protein Sequences
RefSeq Acc Id: XP_005392344   ⟸   XM_005392287
- UniProtKB: A0A8C2VH63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013912   ⟸   ENSCLAT00000014068
RefSeq Acc Id: ENSCLAP00000013913   ⟸   ENSCLAT00000014069
RefSeq Acc Id: ENSCLAP00000013914   ⟸   ENSCLAT00000014070
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014068.1 UniProtKB/TrEMBL
  ENSCLAT00000014069.1 UniProtKB/TrEMBL
  ENSCLAT00000014070 ENTREZGENE
  ENSCLAT00000014070.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Teashirt_fam UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Tshz2 ENTREZGENE
PANTHER PTHR12487 UniProtKB/TrEMBL
  PTHR12487:SF3 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C2VEY6_CHILA UniProtKB/TrEMBL
  A0A8C2VH63 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VKC2_CHILA UniProtKB/TrEMBL