Ptgs2os (prostaglandin-endoperoxide synthase 2, opposite strand) - Rat Genome Database

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Gene: Ptgs2os (prostaglandin-endoperoxide synthase 2, opposite strand) Mus musculus
Analyze
Symbol: Ptgs2os
Name: prostaglandin-endoperoxide synthase 2, opposite strand
RGD ID: 1621986
MGI Page MGI
Description: Acts upstream of or within negative regulation of toll-like receptor signaling pathway and negative regulation of transcription by RNA polymerase II. Located in cytosol and nucleus.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: 7530420F21Rik
RGD Orthologs
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,950,624 - 149,975,625 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,909,888 - 149,975,714 (-)EnsemblGRCm39 Ensembl
GRCm381150,074,873 - 150,099,874 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,074,873 - 150,099,963 (-)EnsemblGRCm38mm10GRCm38
MGSCv371151,923,791 - 151,946,896 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,000,493 - 150,025,425 (-)NCBIMGSCv36mm8
Celera1152,523,330 - 152,546,370 (-)NCBICelera
Cytogenetic Map1G1NCBI
cM Map163.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IDA)
nucleus  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:35365562  


Genomics

Comparative Map Data
Ptgs2os
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,950,624 - 149,975,625 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,909,888 - 149,975,714 (-)EnsemblGRCm39 Ensembl
GRCm381150,074,873 - 150,099,874 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,074,873 - 150,099,963 (-)EnsemblGRCm38mm10GRCm38
MGSCv371151,923,791 - 151,946,896 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,000,493 - 150,025,425 (-)NCBIMGSCv36mm8
Celera1152,523,330 - 152,546,370 (-)NCBICelera
Cytogenetic Map1G1NCBI
cM Map163.84NCBI
Ptgs2os
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81364,710,129 - 64,713,837 (-)NCBIGRCr8
mRatBN7.21362,160,002 - 62,163,710 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1364,794,458 - 64,798,168 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01366,079,255 - 66,082,977 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01363,340,803 - 63,344,512 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01367,347,152 - 67,350,860 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01372,312,292 - 72,316,000 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1362,125,361 - 62,129,069 (-)NCBICelera
Cytogenetic Map13q21NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:141
Interacting mature miRNAs:142
Transcripts:ENSMUST00000181460, ENSMUST00000181915
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1301135Pas8_mpulmonary adenoma susceptibility 8 (mouse)Not determined1147125258158233272Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
13452392Ity3a_mimmunity to S. typhimurium 3a (mouse)1149028612154228616Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000181460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,973,932 - 149,975,714 (-)Ensembl
GRCm38.p6 Ensembl1150,098,181 - 150,099,963 (-)Ensembl
Ensembl Acc Id: ENSMUST00000181915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,950,624 - 149,975,568 (-)Ensembl
GRCm38.p6 Ensembl1150,074,873 - 150,099,817 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342688
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,909,904 - 149,975,652 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342689
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,909,888 - 149,975,431 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,919,694 - 149,963,096 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,952,769 - 149,975,571 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,967,129 - 149,975,675 (-)Ensembl
Ensembl Acc Id: ENSMUST00000342693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1149,972,892 - 149,975,668 (-)Ensembl
RefSeq Acc Id: NR_015466
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391149,950,624 - 149,975,625 (-)NCBI
GRCm381150,074,873 - 150,099,874 (-)NCBI
MGSCv371151,923,791 - 151,946,896 (-)RGD
Celera1152,521,541 - 152,546,478 (-)NCBI
cM Map1 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000097028 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000181915 ENTREZGENE
MGD MGI:2443180 ENTREZGENE
NCBI Gene 320019 ENTREZGENE
PhenoGen Ptgs2os PhenoGen
RNAcentral URS000075D46F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-01-21 Ptgs2os  prostaglandin-endoperoxide synthase 2, opposite strand  7530420F21Rik  RIKEN cDNA 7530420F21 gene  Symbol and/or name change 5135510 APPROVED