Dennd1a (DENN domain containing 1A) - Rat Genome Database

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Gene: Dennd1a (DENN domain containing 1A) Mus musculus
Analyze
Symbol: Dennd1a
Name: DENN domain containing 1A
RGD ID: 1621336
MGI Page MGI
Description: Enables several functions, including SH3 domain binding activity; guanyl-nucleotide exchange factor activity; and phosphatidylinositol-3-phosphate binding activity. Involved in endocytic recycling. Acts upstream of or within synaptic vesicle endocytosis. Located in several cellular components, including clathrin-coated vesicle membrane; dendrite; and neuronal cell body. Is expressed in brain; branchial arch; embryo; forelimb bud; and future forebrain. Orthologous to human DENND1A (DENN domain containing 1A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6030446I19Rik; connecdenn; connecdenn 1; DENN domain-containing protein 1A; DENN/MADD domain containing 1A; MGC38995
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39237,689,002 - 38,177,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl237,689,003 - 38,177,402 (-)EnsemblGRCm39 Ensembl
GRCm38237,798,990 - 38,287,410 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl237,798,991 - 38,287,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv37237,654,510 - 38,142,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36237,621,000 - 38,109,356 (-)NCBIMGSCv36mm8
Celera237,484,305 - 37,845,059 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:17182770   PMID:18799693   PMID:20159556   PMID:21677750   PMID:21873635   PMID:30884041   PMID:35449600  


Genomics

Comparative Map Data
Dennd1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39237,689,002 - 38,177,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl237,689,003 - 38,177,402 (-)EnsemblGRCm39 Ensembl
GRCm38237,798,990 - 38,287,410 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl237,798,991 - 38,287,390 (-)EnsemblGRCm38mm10GRCm38
MGSCv37237,654,510 - 38,142,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36237,621,000 - 38,109,356 (-)NCBIMGSCv36mm8
Celera237,484,305 - 37,845,059 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
DENND1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389123,379,658 - 123,930,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9123,379,654 - 123,930,152 (-)EnsemblGRCh38hg38GRCh38
GRCh379126,141,937 - 126,692,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369125,181,754 - 125,732,238 (-)NCBINCBI36Build 36hg18NCBI36
Build 349123,243,423 - 123,771,971NCBI
Celera996,790,158 - 97,339,675 (-)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef995,756,878 - 96,306,367 (-)NCBIHuRef
CHM1_19126,290,596 - 126,841,219 (-)NCBICHM1_1
T2T-CHM13v2.09135,577,391 - 136,128,012 (-)NCBIT2T-CHM13v2.0
Dennd1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8341,974,502 - 42,461,816 (-)NCBIGRCr8
mRatBN7.2321,564,749 - 22,052,057 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl321,564,749 - 22,052,062 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx325,032,954 - 25,463,774 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0333,617,912 - 34,048,766 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0331,429,892 - 31,860,523 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0322,061,120 - 22,501,502 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,058,400 - 22,500,765 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0327,296,829 - 27,750,936 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4317,561,878 - 17,996,342 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1317,459,291 - 17,993,186 (-)NCBI
Celera319,998,559 - 20,428,895 (-)NCBICelera
Cytogenetic Map3q11-q12NCBI
Dennd1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554194,146,456 - 4,608,425 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554194,120,095 - 4,605,002 (+)NCBIChiLan1.0ChiLan1.0
DENND1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21115,422,791 - 15,965,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1915,425,146 - 15,967,947 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0994,511,281 - 95,053,490 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19123,035,433 - 123,532,038 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9123,037,217 - 123,532,037 (-)Ensemblpanpan1.1panPan2
DENND1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,918,699 - 59,424,685 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,919,265 - 59,424,684 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha958,114,217 - 58,621,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,835,883 - 60,345,684 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,835,961 - 60,345,010 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1958,595,059 - 59,104,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,911,773 - 59,419,867 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0959,002,954 - 59,512,277 (+)NCBIUU_Cfam_GSD_1.0
Dennd1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947192,046,518 - 192,564,066 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648711,812,658 - 12,332,673 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648711,815,040 - 12,332,603 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DENND1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1264,300,994 - 264,823,489 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11264,300,989 - 264,823,351 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21298,049,860 - 298,440,397 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DENND1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11214,211,743 - 14,756,063 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1214,212,606 - 14,758,953 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660791,313,817 - 1,856,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dennd1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476011,043,348 - 11,575,531 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476011,043,099 - 11,576,600 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dennd1a
9462 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1882
Count of miRNA genes:734
Interacting mature miRNAs:917
Transcripts:ENSMUST00000102787, ENSMUST00000126889, ENSMUST00000128492, ENSMUST00000130472, ENSMUST00000136116, ENSMUST00000136460, ENSMUST00000140552, ENSMUST00000142813, ENSMUST00000143095, ENSMUST00000150896
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse

Markers in Region
31.MMHAP63FRC10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38237,910,121 - 37,910,273UniSTSGRCm38
MGSCv37237,765,641 - 37,765,793UniSTSGRCm37
Celera237,595,403 - 37,595,555UniSTS
Cytogenetic Map2BUniSTS
Whitehead_YAC2 UniSTS
UniSTS:234378  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38238,152,484 - 38,152,799UniSTSGRCm38
MGSCv37238,008,004 - 38,008,319UniSTSGRCm37
Celera237,837,690 - 37,838,005UniSTS
Cytogenetic Map2BUniSTS
UniSTS:234381  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38237,966,832 - 37,967,031UniSTSGRCm38
MGSCv37237,822,352 - 37,822,551UniSTSGRCm37
Celera237,652,197 - 37,652,396UniSTS
Cytogenetic Map2BUniSTS
D2Mit7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38238,239,713 - 38,239,859UniSTSGRCm38
MGSCv37238,095,233 - 38,095,379UniSTSGRCm37
Cytogenetic Map2BUniSTS
cM Map228.0UniSTS
Whitehead Genetic227.3UniSTS
Whitehead_YAC2 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006498004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004939812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK048155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL805959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ444119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX563166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ448594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000102787   ⟹   ENSMUSP00000099848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,689,003 - 38,177,387 (-)Ensembl
GRCm38.p6 Ensembl237,798,991 - 38,287,375 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,911,278 - 38,056,093 (-)Ensembl
GRCm38.p6 Ensembl238,021,266 - 38,166,081 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128492
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl238,127,375 - 38,177,226 (-)Ensembl
GRCm38.p6 Ensembl238,237,363 - 38,287,214 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130472   ⟹   ENSMUSP00000119892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,826,676 - 38,177,200 (-)Ensembl
GRCm38.p6 Ensembl237,936,664 - 38,287,188 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl238,049,264 - 38,133,482 (-)Ensembl
GRCm38.p6 Ensembl238,159,252 - 38,243,470 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136460   ⟹   ENSMUSP00000115527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,691,084 - 37,742,452 (-)Ensembl
GRCm38.p6 Ensembl237,801,072 - 37,852,440 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140552   ⟹   ENSMUSP00000120998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,706,928 - 38,177,402 (-)Ensembl
GRCm38.p6 Ensembl237,816,916 - 38,287,390 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142813   ⟹   ENSMUSP00000116396
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl238,016,616 - 38,177,230 (-)Ensembl
GRCm38.p6 Ensembl238,126,604 - 38,287,218 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143095   ⟹   ENSMUSP00000116018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,933,358 - 38,177,370 (-)Ensembl
GRCm38.p6 Ensembl238,043,346 - 38,287,358 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150896   ⟹   ENSMUSP00000116723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl237,826,631 - 38,177,389 (-)Ensembl
GRCm38.p6 Ensembl237,936,619 - 38,287,377 (-)Ensembl
RefSeq Acc Id: ENSMUST00000205218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl238,053,750 - 38,057,831 (-)Ensembl
GRCm38.p6 Ensembl238,163,738 - 38,167,819 (-)Ensembl
RefSeq Acc Id: NM_001362973   ⟹   NP_001349902
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,002 - 38,177,396 (-)NCBI
GRCm38237,798,990 - 38,287,384 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362977   ⟹   NP_001349906
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,002 - 38,177,396 (-)NCBI
GRCm38237,798,990 - 38,287,384 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362978   ⟹   NP_001349907
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,002 - 38,177,396 (-)NCBI
GRCm38237,798,990 - 38,287,384 (-)NCBI
Sequence:
RefSeq Acc Id: NM_146122   ⟹   NP_666234
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,002 - 38,177,396 (-)NCBI
GRCm38237,798,990 - 38,287,384 (-)NCBI
MGSCv37237,654,510 - 38,142,904 (-)RGD
Celera237,484,305 - 37,845,059 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497998   ⟹   XP_006498061
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,417 (-)NCBI
GRCm38237,798,993 - 38,287,410 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006498000   ⟹   XP_006498063
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
GRCm38237,798,993 - 38,287,404 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006498001   ⟹   XP_006498064
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
GRCm38237,798,993 - 38,287,404 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006498002   ⟹   XP_006498065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
GRCm38237,798,993 - 38,287,404 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006498003   ⟹   XP_006498066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,417 (-)NCBI
GRCm38237,798,993 - 38,287,410 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006498004   ⟹   XP_006498067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,133,504 (-)NCBI
GRCm38237,798,993 - 38,243,492 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239087   ⟹   XP_011237389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
GRCm38237,798,993 - 38,287,404 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250063   ⟹   XP_030105923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
GRCm38237,798,993 - 38,287,404 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250065   ⟹   XP_030105925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
GRCm38237,798,993 - 38,287,404 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250071   ⟹   XP_030105931
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,245 (-)NCBI
GRCm38237,798,993 - 38,287,233 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250087   ⟹   XP_030105947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,394 (-)NCBI
GRCm38237,798,993 - 38,287,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250088   ⟹   XP_030105948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,389 (-)NCBI
GRCm38237,798,993 - 38,287,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250090   ⟹   XP_030105950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,394 (-)NCBI
GRCm38237,798,993 - 38,287,381 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250097   ⟹   XP_030105957
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,003 - 38,177,393 (-)NCBI
GRCm38237,798,993 - 38,287,380 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160912   ⟹   XP_036016805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160916   ⟹   XP_036016809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160920   ⟹   XP_036016813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,177,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160931   ⟹   XP_036016824
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,003 - 38,177,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160933   ⟹   XP_036016826
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,003 - 38,177,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160934   ⟹   XP_036016827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,003 - 38,177,192 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160935   ⟹   XP_036016828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,003 - 38,177,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160936   ⟹   XP_036016829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,003 - 38,177,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160937   ⟹   XP_036016830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,005 - 38,049,862 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004939812
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39237,689,003 - 38,177,416 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001349902 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349906 (Get FASTA)   NCBI Sequence Viewer  
  NP_001349907 (Get FASTA)   NCBI Sequence Viewer  
  NP_666234 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498061 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498063 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498064 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498065 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498066 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498067 (Get FASTA)   NCBI Sequence Viewer  
  XP_011237389 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105923 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105925 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105931 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105947 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105948 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105950 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105957 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016805 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016809 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016813 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016824 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016826 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016827 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016828 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016829 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016830 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH23016 (Get FASTA)   NCBI Sequence Viewer  
  AAH27786 (Get FASTA)   NCBI Sequence Viewer  
  ABD93329 (Get FASTA)   NCBI Sequence Viewer  
  BAD90259 (Get FASTA)   NCBI Sequence Viewer  
  EDL08718 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000099848
  ENSMUSP00000099848.4
  ENSMUSP00000115527.2
  ENSMUSP00000116018.2
  ENSMUSP00000116396.2
  ENSMUSP00000116723.2
  ENSMUSP00000119892.2
  ENSMUSP00000120998.2
GenBank Protein Q8K382 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_666234   ⟸   NM_146122
- Peptide Label: isoform 2
- UniProtKB: A0MCI0 (UniProtKB/Swiss-Prot),   A2ALU2 (UniProtKB/Swiss-Prot),   Q8K382 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006498061   ⟸   XM_006497998
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006498064   ⟸   XM_006498001
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006498065   ⟸   XM_006498002
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006498063   ⟸   XM_006498000
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006498066   ⟸   XM_006498003
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006498067   ⟸   XM_006498004
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_011237389   ⟸   XM_011239087
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: NP_001349907   ⟸   NM_001362978
- Peptide Label: isoform 4 precursor
- UniProtKB: Q5DTW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349906   ⟸   NM_001362977
- Peptide Label: isoform 3 precursor
- UniProtKB: Q5DTW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349902   ⟸   NM_001362973
- Peptide Label: isoform 1
RefSeq Acc Id: XP_030105923   ⟸   XM_030250063
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030105925   ⟸   XM_030250065
- Peptide Label: isoform X12
- UniProtKB: Q5DTW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105948   ⟸   XM_030250088
- Peptide Label: isoform X16
RefSeq Acc Id: XP_030105950   ⟸   XM_030250090
- Peptide Label: isoform X17
RefSeq Acc Id: XP_030105947   ⟸   XM_030250087
- Peptide Label: isoform X16
RefSeq Acc Id: XP_030105957   ⟸   XM_030250097
- Peptide Label: isoform X18
RefSeq Acc Id: XP_030105931   ⟸   XM_030250071
- Peptide Label: isoform X13
RefSeq Acc Id: ENSMUSP00000116723   ⟸   ENSMUST00000150896
RefSeq Acc Id: ENSMUSP00000119892   ⟸   ENSMUST00000130472
RefSeq Acc Id: ENSMUSP00000116018   ⟸   ENSMUST00000143095
RefSeq Acc Id: ENSMUSP00000120998   ⟸   ENSMUST00000140552
RefSeq Acc Id: ENSMUSP00000116396   ⟸   ENSMUST00000142813
RefSeq Acc Id: ENSMUSP00000115527   ⟸   ENSMUST00000136460
RefSeq Acc Id: ENSMUSP00000099848   ⟸   ENSMUST00000102787
RefSeq Acc Id: XP_036016824   ⟸   XM_036160931
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036016828   ⟸   XM_036160935
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036016829   ⟸   XM_036160936
- Peptide Label: isoform X15
- UniProtKB: Q5DTW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016826   ⟸   XM_036160933
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036016827   ⟸   XM_036160934
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036016809   ⟸   XM_036160916
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036016813   ⟸   XM_036160920
- Peptide Label: isoform X11
RefSeq Acc Id: XP_036016805   ⟸   XM_036160912
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036016830   ⟸   XM_036160937
- Peptide Label: isoform X16
Protein Domains
cDENN   dDENN   uDENN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K382-F1-model_v2 AlphaFold Q8K382 1-1016 view protein structure

Promoters
RGD ID:6831151
Promoter ID:MM_KWN:29004
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000040406,   ENSMUST00000090997,   NM_146122,   OTTMUST00000030444,   OTTMUST00000030445,   OTTMUST00000030446,   OTTMUST00000030447,   OTTMUST00000030448,   OTTMUST00000030449,   UC008JNH.1,   UC008JNI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36238,142,476 - 38,142,976 (-)MPROMDB
RGD ID:6877196
Promoter ID:EPDNEW_M2049
Type:initiation region
Name:Dennd1a_2
Description:Mus musculus DENN/MADD domain containing 1A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2050  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38238,287,188 - 38,287,248EPDNEW
RGD ID:6877198
Promoter ID:EPDNEW_M2050
Type:initiation region
Name:Dennd1a_1
Description:Mus musculus DENN/MADD domain containing 1A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2049  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38238,287,366 - 38,287,426EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442794 AgrOrtholog
Ensembl Genes ENSMUSG00000035392 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000102787 ENTREZGENE
  ENSMUST00000102787.10 UniProtKB/Swiss-Prot
  ENSMUST00000130472.8 UniProtKB/TrEMBL
  ENSMUST00000136460.2 UniProtKB/TrEMBL
  ENSMUST00000140552.8 UniProtKB/TrEMBL
  ENSMUST00000142813.2 UniProtKB/TrEMBL
  ENSMUST00000143095.8 UniProtKB/TrEMBL
  ENSMUST00000150896.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.11500 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.140.1000 UniProtKB/Swiss-Prot
InterPro cDENN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  dDENN_dom UniProtKB/Swiss-Prot
  DENN_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DENND1A/B/C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tripartite_DENN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  uDENN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227801 UniProtKB/Swiss-Prot
MGD MGI:2442794 ENTREZGENE
NCBI Gene 227801 ENTREZGENE
PANTHER DENN DOMAIN-CONTAINING PROTEIN 1A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13196 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam dDENN UniProtKB/Swiss-Prot
  DENN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  uDENN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dennd1a PhenoGen
PROSITE DENN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART dDENN UniProtKB/Swiss-Prot
  DENN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  uDENN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0MCI0 ENTREZGENE
  A2ALU2 ENTREZGENE
  A2ALU3_MOUSE UniProtKB/TrEMBL
  A2AUP6_MOUSE UniProtKB/TrEMBL
  D6RH88_MOUSE UniProtKB/TrEMBL
  D6RHL0_MOUSE UniProtKB/TrEMBL
  D6RHP6_MOUSE UniProtKB/TrEMBL
  D6RI65_MOUSE UniProtKB/TrEMBL
  DEN1A_MOUSE UniProtKB/Swiss-Prot
  Q5DTW3 ENTREZGENE, UniProtKB/TrEMBL
  Q8K382 ENTREZGENE
  Q8R1W1_MOUSE UniProtKB/TrEMBL
UniProt Secondary A0MCI0 UniProtKB/Swiss-Prot
  A2ALU2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-11-29 Dennd1a  DENN domain containing 1A  Dennd1a  DENN/MADD domain containing 1A  Symbol and/or name change 5135510 APPROVED