Gtdc1 (glycosyltransferase-like domain containing 1) - Rat Genome Database

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Gene: Gtdc1 (glycosyltransferase-like domain containing 1) Mus musculus
Analyze
Symbol: Gtdc1
Name: glycosyltransferase-like domain containing 1
RGD ID: 1621335
MGI Page MGI
Description: Predicted to enable tRNA-queuosine(34) beta-mannosyltransferase activity. Predicted to be involved in regulation of translation and tRNA modification. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in central nervous system. Orthologous to human GTDC1 (glycosyltransferase like domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E330008O22Rik; glycosyltransferase-like domain-containing protein 1; QTMAN; tRNA-queuosine alpha-mannosyltransferase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39244,454,420 - 44,817,761 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl244,454,424 - 44,817,669 (-)EnsemblGRCm39 Ensembl
GRCm38244,564,412 - 44,927,717 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl244,564,412 - 44,927,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv37244,419,942 - 44,717,142 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36244,386,431 - 44,683,631 (-)NCBIMGSCv36mm8
Celera246,279,991 - 46,577,581 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map227.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cellular_component  (ND)
cytoplasm  (ISO,ISS)
nucleus  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:34321999  


Genomics

Comparative Map Data
Gtdc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39244,454,420 - 44,817,761 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl244,454,424 - 44,817,669 (-)EnsemblGRCm39 Ensembl
GRCm38244,564,412 - 44,927,717 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl244,564,412 - 44,927,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv37244,419,942 - 44,717,142 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36244,386,431 - 44,683,631 (-)NCBIMGSCv36mm8
Celera246,279,991 - 46,577,581 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map227.27NCBI
GTDC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382143,938,068 - 144,333,069 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2143,938,068 - 144,332,568 (-)EnsemblGRCh38hg38GRCh38
GRCh372144,695,635 - 145,090,636 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362144,420,051 - 144,768,530 (-)NCBINCBI36Build 36hg18NCBI36
Build 342144,537,314 - 144,923,761NCBI
Celera2138,416,309 - 138,773,953 (-)NCBICelera
Cytogenetic Map2q22.3NCBI
HuRef2136,694,427 - 137,081,275 (-)NCBIHuRef
CHM1_12144,708,568 - 145,095,377 (-)NCBICHM1_1
T2T-CHM13v2.02144,386,085 - 144,781,108 (-)NCBIT2T-CHM13v2.0
Gtdc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8349,176,110 - 49,571,594 (-)NCBIGRCr8
mRatBN7.2328,766,640 - 29,161,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl328,766,645 - 29,162,271 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx332,164,654 - 32,554,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0340,749,692 - 41,139,997 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0338,568,394 - 38,958,706 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0329,410,426 - 29,705,981 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl329,410,426 - 29,705,985 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0334,615,976 - 34,911,407 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4325,042,343 - 25,345,382 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera327,077,114 - 27,374,815 (-)NCBICelera
Cytogenetic Map3q12NCBI
Gtdc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544010,334,533 - 10,613,876 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544010,334,584 - 10,702,436 (-)NCBIChiLan1.0ChiLan1.0
GTDC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21330,580,758 - 30,966,173 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B30,595,689 - 30,981,144 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B15,512,420 - 15,899,477 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B148,024,000 - 148,370,779 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B148,026,117 - 148,312,426 (-)Ensemblpanpan1.1panPan2
GTDC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11945,971,203 - 46,273,888 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1945,973,109 - 46,365,143 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1946,225,123 - 46,618,749 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01947,431,445 - 47,824,801 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1947,431,457 - 47,824,757 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11946,089,792 - 46,482,874 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01946,221,623 - 46,614,340 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01947,616,846 - 48,009,770 (-)NCBIUU_Cfam_GSD_1.0
Gtdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303108,826,282 - 109,182,381 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646932,539,891 - 32,790,374 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646932,514,679 - 32,791,418 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTDC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl157,757,935 - 8,051,594 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1157,685,969 - 8,162,784 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2158,377,968 - 8,636,346 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTDC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11029,275,462 - 29,674,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1029,293,207 - 29,548,585 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040169,883,093 - 170,289,268 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtdc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473243,646,458 - 43,909,842 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473243,629,144 - 44,044,616 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1962
Count of miRNA genes:806
Interacting mature miRNAs:1034
Transcripts:ENSMUST00000049051, ENSMUST00000100127, ENSMUST00000112810, ENSMUST00000129240, ENSMUST00000130991, ENSMUST00000133442, ENSMUST00000134813, ENSMUST00000143333, ENSMUST00000143766, ENSMUST00000146694, ENSMUST00000148279, ENSMUST00000148786, ENSMUST00000154744
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse

Markers in Region
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001362986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003952199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK028468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX293544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX294003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000049051   ⟹   ENSMUSP00000038119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,454,427 - 44,646,449 (-)Ensembl
GRCm38.p6 Ensembl244,564,415 - 44,756,437 (-)Ensembl
Ensembl Acc Id: ENSMUST00000100127   ⟹   ENSMUSP00000097703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,675,502 - 44,817,248 (-)Ensembl
GRCm38.p6 Ensembl244,785,490 - 44,927,236 (-)Ensembl
Ensembl Acc Id: ENSMUST00000112810   ⟹   ENSMUSP00000108429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,454,424 - 44,751,634 (-)Ensembl
GRCm38.p6 Ensembl244,564,412 - 44,861,622 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,523,141 - 44,817,276 (-)Ensembl
GRCm38.p6 Ensembl244,633,129 - 44,927,264 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130991   ⟹   ENSMUSP00000116839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,465,490 - 44,817,173 (-)Ensembl
GRCm38.p6 Ensembl244,575,478 - 44,927,161 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133442
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,681,205 - 44,817,161 (-)Ensembl
GRCm38.p6 Ensembl244,791,193 - 44,927,149 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134813
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,455,145 - 44,461,359 (-)Ensembl
GRCm38.p6 Ensembl244,565,133 - 44,571,347 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,460,382 - 44,461,726 (-)Ensembl
GRCm38.p6 Ensembl244,570,370 - 44,571,714 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,678,740 - 44,817,246 (-)Ensembl
GRCm38.p6 Ensembl244,788,728 - 44,927,234 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146694   ⟹   ENSMUSP00000119639
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,481,922 - 44,752,287 (-)Ensembl
GRCm38.p6 Ensembl244,591,910 - 44,862,275 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148279   ⟹   ENSMUSP00000120593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,525,276 - 44,817,669 (-)Ensembl
GRCm38.p6 Ensembl244,635,264 - 44,927,657 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,641,907 - 44,715,415 (-)Ensembl
GRCm38.p6 Ensembl244,751,895 - 44,825,403 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154744   ⟹   ENSMUSP00000119239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl244,646,280 - 44,752,287 (-)Ensembl
GRCm38.p6 Ensembl244,756,268 - 44,862,275 (-)Ensembl
RefSeq Acc Id: NM_001362986   ⟹   NP_001349915
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,454,424 - 44,817,729 (-)NCBI
GRCm38244,564,412 - 44,927,717 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001362987   ⟹   NP_001349916
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,454,424 - 44,817,248 (-)NCBI
GRCm38244,564,412 - 44,927,236 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172662   ⟹   NP_766250
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,454,424 - 44,751,634 (-)NCBI
GRCm38244,564,412 - 44,861,622 (-)NCBI
MGSCv37244,419,942 - 44,717,142 (-)RGD
Celera246,279,981 - 46,577,581 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_156429
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,677,124 - 44,817,248 (-)NCBI
GRCm38244,787,112 - 44,927,236 (-)NCBI
Sequence:
RefSeq Acc Id: NR_156430
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,675,502 - 44,817,248 (-)NCBI
GRCm38244,785,490 - 44,927,236 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011239091   ⟹   XP_011237393
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,454,420 - 44,810,762 (-)NCBI
GRCm38244,564,412 - 44,920,803 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250118   ⟹   XP_030105978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,477,096 - 44,817,296 (-)NCBI
GRCm38244,587,084 - 44,927,299 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952196
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,454,420 - 44,817,296 (-)NCBI
GRCm38244,564,412 - 44,927,299 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003952199
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39244,454,420 - 44,817,761 (-)NCBI
GRCm38244,564,412 - 44,927,674 (-)NCBI
Sequence:
RefSeq Acc Id: NP_766250   ⟸   NM_172662
- UniProtKB: Q80US3 (UniProtKB/Swiss-Prot),   Q3TQ41 (UniProtKB/Swiss-Prot),   A2AVU2 (UniProtKB/Swiss-Prot),   A2AQS2 (UniProtKB/Swiss-Prot),   A2AQR9 (UniProtKB/Swiss-Prot),   Q8C1B8 (UniProtKB/Swiss-Prot),   Q8BW56 (UniProtKB/Swiss-Prot),   G8JL42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237393   ⟸   XM_011239091
- Peptide Label: isoform X1
- UniProtKB: Q80US3 (UniProtKB/Swiss-Prot),   Q3TQ41 (UniProtKB/Swiss-Prot),   A2AVU2 (UniProtKB/Swiss-Prot),   A2AQS2 (UniProtKB/Swiss-Prot),   A2AQR9 (UniProtKB/Swiss-Prot),   Q8C1B8 (UniProtKB/Swiss-Prot),   Q8BW56 (UniProtKB/Swiss-Prot),   G8JL42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349915   ⟸   NM_001362986
- UniProtKB: Q8BW56 (UniProtKB/Swiss-Prot),   Q80US3 (UniProtKB/Swiss-Prot),   Q3TQ41 (UniProtKB/Swiss-Prot),   A2AVU2 (UniProtKB/Swiss-Prot),   A2AQS2 (UniProtKB/Swiss-Prot),   A2AQR9 (UniProtKB/Swiss-Prot),   Q8C1B8 (UniProtKB/Swiss-Prot),   G8JL42 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001349916   ⟸   NM_001362987
- UniProtKB: Q8BW56 (UniProtKB/Swiss-Prot),   Q80US3 (UniProtKB/Swiss-Prot),   Q3TQ41 (UniProtKB/Swiss-Prot),   A2AVU2 (UniProtKB/Swiss-Prot),   A2AQS2 (UniProtKB/Swiss-Prot),   A2AQR9 (UniProtKB/Swiss-Prot),   Q8C1B8 (UniProtKB/Swiss-Prot),   G8JL42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105978   ⟸   XM_030250118
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000116839   ⟸   ENSMUST00000130991
Ensembl Acc Id: ENSMUSP00000038119   ⟸   ENSMUST00000049051
Ensembl Acc Id: ENSMUSP00000119639   ⟸   ENSMUST00000146694
Ensembl Acc Id: ENSMUSP00000108429   ⟸   ENSMUST00000112810
Ensembl Acc Id: ENSMUSP00000119239   ⟸   ENSMUST00000154744
Ensembl Acc Id: ENSMUSP00000120593   ⟸   ENSMUST00000148279
Ensembl Acc Id: ENSMUSP00000097703   ⟸   ENSMUST00000100127
Protein Domains
Glycosyl transferase family   tRNA-queuosine alpha-mannosyltransferase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BW56-F1-model_v2 AlphaFold Q8BW56 1-445 view protein structure

Promoters
RGD ID:6877244
Promoter ID:EPDNEW_M2073
Type:multiple initiation site
Name:Gtdc1_2
Description:Mus musculus glycosyltransferase-like domain containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2074  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38244,856,899 - 44,856,959EPDNEW
RGD ID:6877246
Promoter ID:EPDNEW_M2074
Type:multiple initiation site
Name:Gtdc1_1
Description:Mus musculus glycosyltransferase-like domain containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2073  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38244,927,223 - 44,927,283EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444269 AgrOrtholog
Ensembl Genes ENSMUSG00000036890 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049051 ENTREZGENE
  ENSMUST00000049051.13 UniProtKB/TrEMBL
  ENSMUST00000100127 ENTREZGENE
  ENSMUST00000100127.9 UniProtKB/Swiss-Prot
  ENSMUST00000112810 ENTREZGENE
  ENSMUST00000112810.8 UniProtKB/Swiss-Prot
  ENSMUST00000130991.8 UniProtKB/TrEMBL
  ENSMUST00000146694.8 UniProtKB/TrEMBL
  ENSMUST00000148279.8 UniProtKB/TrEMBL
  ENSMUST00000154744.8 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glyco_trans_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GlycosylTrfase_1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GT-like_domain_containing_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227835 UniProtKB/Swiss-Prot
MGD MGI:2444269 ENTREZGENE
NCBI Gene 227835 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE-LIKE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLYCOSYLTRANSFERASE-LIKE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3524 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glycos_transf_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gtdc1 PhenoGen
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MQI8_MOUSE UniProtKB/TrEMBL
  A0A0A0MQK2_MOUSE UniProtKB/TrEMBL
  A2AQR9 ENTREZGENE
  A2AQS2 ENTREZGENE
  A2AVU2 ENTREZGENE
  B1AY87_MOUSE UniProtKB/TrEMBL
  B1AY88_MOUSE UniProtKB/TrEMBL
  G8JL42 ENTREZGENE, UniProtKB/TrEMBL
  GTDC1_MOUSE UniProtKB/Swiss-Prot
  Q3TQ41 ENTREZGENE
  Q80US3 ENTREZGENE
  Q8BW56 ENTREZGENE
  Q8C1B8 ENTREZGENE
UniProt Secondary A2AQR9 UniProtKB/Swiss-Prot
  A2AQS2 UniProtKB/Swiss-Prot
  A2AVU2 UniProtKB/Swiss-Prot
  Q3TQ41 UniProtKB/Swiss-Prot
  Q80US3 UniProtKB/Swiss-Prot
  Q8C1B8 UniProtKB/Swiss-Prot