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Gene: Fbxo39 (F-box protein 39) Mus musculus

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Symbol:

Fbxo39

Name:

F-box protein 39

RGD ID:

1621231

MGI Page

MGI

Description:

Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXO39 (F-box protein 39).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

1700010H23Rik; F-box only protein 39; F-box protein 38; RIKEN cDNA 1700010H23 gene; RP24-450M24.5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO39 (F-box protein 39)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Fbxo39 (F-box protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fbxo39 (F-box protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO39 (F-box protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO39 (F-box protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo39 (F-box protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO39 (F-box protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO39 (F-box protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo39 (F-box protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Fbxo39 (F-box protein 39)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FBXO39 (F-box protein 39)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	72,205,270 - 72,210,245 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	72,205,270 - 72,210,242 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	72,314,444 - 72,319,419 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	72,314,444 - 72,319,416 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	72,127,946 - 72,132,921 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	72,130,285 - 72,135,614 (+)	NCBI		MGSCv36	mm8
Celera	11	79,836,076 - 79,841,061 (+)	NCBI		Celera
Cytogenetic Map	11	B4	NCBI
cM Map	11	44.0	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo39	Mouse	common variable immunodeficiency		ISO	FBXO39 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Common variable immunodeficiency	ClinVar	PMID:28492532
Fbxo39	Mouse	congenital myasthenic syndrome 2A		ISO	FBXO39 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital myasthenic syndrome 2A	ClinVar	PMID:28492532
Fbxo39	Mouse	developmental and epileptic encephalopathy 25		ISO	FBXO39 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy and 25	ClinVar	PMID:28492532
Fbxo39	Mouse	dyskeratosis congenita		ISO	FBXO39 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dyskeratosis congenita	ClinVar	PMID:28492532
Fbxo39	Mouse	very long chain acyl-CoA dehydrogenase deficiency		ISO	FBXO39 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Very long chain acyl-CoA dehydrogenase deficiency	ClinVar	PMID:11590124 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo39	Mouse	1,2-dichloroethane	increases expression	EXP		6480464	ethylene dichloride results in increased expression of FBXO39 mRNA	CTD	PMID:28960355
Fbxo39	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of FBXO39 mRNA	CTD	PMID:19770486
Fbxo39	Mouse	4-hydroxynon-2-enal	decreases expression	EXP		6480464	4-hydroxy-2-nonenal results in decreased expression of FBXO39 mRNA	CTD	PMID:19191707
Fbxo39	Mouse	acetamide	increases expression	ISO	Fbxo39 (Rattus norvegicus)	6480464	acetamide results in increased expression of FBXO39 mRNA	CTD	PMID:31881176
Fbxo39	Mouse	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of FBXO39 mRNA	CTD	PMID:19770486
Fbxo39	Mouse	arsenite(3-)	increases methylation	ISO	FBXO39 (Homo sapiens)	6480464	arsenite results in increased methylation of FBXO39 promoter	CTD	PMID:23974009
Fbxo39	Mouse	benzo[a]pyrene	increases methylation	ISO	FBXO39 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of FBXO39 3' UTR more ...	CTD	PMID:27901495
Fbxo39	Mouse	benzo[a]pyrene	increases expression	ISO	FBXO39 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased expression of FBXO39 mRNA	CTD	PMID:32234424
Fbxo39	Mouse	bis(2-ethylhexyl) phthalate	decreases expression	EXP		6480464	Diethylhexyl Phthalate results in decreased expression of FBXO39 mRNA	CTD	PMID:34319233
Fbxo39	Mouse	bisphenol A	decreases expression	ISO	Fbxo39 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of FBXO39 mRNA	CTD	PMID:25181051
Fbxo39	Mouse	bisphenol A	multiple interactions	ISO	FBXO39 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of FBXO39 gene	CTD	PMID:31601247
Fbxo39	Mouse	C60 fullerene	increases expression	ISO	Fbxo39 (Rattus norvegicus)	6480464	fullerene C60 results in increased expression of FBXO39 mRNA	CTD	PMID:19167457
Fbxo39	Mouse	cobalt dichloride	increases expression	EXP		6480464	cobaltous chloride results in increased expression of FBXO39 mRNA	CTD	PMID:21139344
Fbxo39	Mouse	copper atom	increases expression	ISO	Fbxo39 (Rattus norvegicus)	6480464	Copper deficiency results in increased expression of FBXO39 mRNA	CTD	PMID:26033743
Fbxo39	Mouse	copper(0)	increases expression	ISO	Fbxo39 (Rattus norvegicus)	6480464	Copper deficiency results in increased expression of FBXO39 mRNA	CTD	PMID:26033743
Fbxo39	Mouse	dioxygen	multiple interactions	ISO	Fbxo39 (Rattus norvegicus)	6480464	[dan-shen root extract co-treated with Andrographis paniculata extract] inhibits the reaction [[Oxygen deficiency co-treated with Blood Glucose deficiency co-treated with Particulate Matter] results in decreased expression of FBXO39 mRNA] and [Oxygen deficiency co-treated with Blood Glucose deficiency co-treated with Particulate Matter] results in decreased expression of FBXO39 mRNA	CTD	PMID:33729688
Fbxo39	Mouse	folic acid	decreases expression	EXP		6480464	Folic Acid results in decreased expression of FBXO39 mRNA	CTD	PMID:25629700
Fbxo39	Mouse	fulvestrant	multiple interactions	ISO	FBXO39 (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] results in increased methylation of FBXO39 gene	CTD	PMID:31601247
Fbxo39	Mouse	genistein	decreases expression	EXP		6480464	Genistein results in decreased expression of FBXO39 mRNA	CTD	PMID:32186404
Fbxo39	Mouse	lead diacetate	increases expression	ISO	FBXO39 (Homo sapiens)	6480464	lead acetate results in increased expression of FBXO39 mRNA	CTD	PMID:38568856
Fbxo39	Mouse	lipopolysaccharide	multiple interactions	ISO	FBXO39 (Homo sapiens)	6480464	S-(1 and 2-dichlorovinyl)cysteine inhibits the reaction [Lipopolysaccharides results in increased expression of FBXO39 mRNA]	CTD	PMID:35811015
Fbxo39	Mouse	lipopolysaccharide	increases expression	ISO	FBXO39 (Homo sapiens)	6480464	Lipopolysaccharides results in increased expression of FBXO39 mRNA	CTD	PMID:35811015
Fbxo39	Mouse	N-acetyl-1,4-benzoquinone imine	affects response to substance	ISO	FBXO39 (Homo sapiens)	6480464	FBXO39 gene SNP affects the susceptibility to N-acetyl-4-benzoquinoneimine	CTD	PMID:21177773
Fbxo39	Mouse	N-Nitrosopyrrolidine	increases expression	ISO	FBXO39 (Homo sapiens)	6480464	N-Nitrosopyrrolidine results in increased expression of FBXO39 mRNA	CTD	PMID:32234424
Fbxo39	Mouse	paracetamol	affects expression	EXP		6480464	Acetaminophen affects the expression of FBXO39 mRNA	CTD	PMID:17562736
Fbxo39	Mouse	paraquat	decreases expression	ISO	Fbxo39 (Rattus norvegicus)	6480464	Paraquat results in decreased expression of FBXO39 mRNA	CTD	PMID:32680482
Fbxo39	Mouse	perfluorohexanesulfonic acid	decreases expression	ISO	FBXO39 (Homo sapiens)	6480464	perfluorohexanesulfonic acid results in decreased expression of FBXO39 mRNA	CTD	PMID:25812627
Fbxo39	Mouse	perfluorononanoic acid	increases expression	ISO	FBXO39 (Homo sapiens)	6480464	perfluoro-n-nonanoic acid results in increased expression of FBXO39 mRNA	CTD	PMID:25812627
Fbxo39	Mouse	perfluorooctane-1-sulfonic acid	increases expression	ISO	FBXO39 (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in increased expression of FBXO39 mRNA	CTD	PMID:25812627
Fbxo39	Mouse	pirinixic acid	multiple interactions	EXP		6480464	[pirinixic acid binds to and results in increased activity of PPARA protein] which results in increased expression of FBXO39 mRNA	CTD	PMID:19710929
Fbxo39	Mouse	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	FBXO39 (Homo sapiens)	6480464	S-(1 and 2-dichlorovinyl)cysteine inhibits the reaction [Lipopolysaccharides results in increased expression of FBXO39 mRNA]	CTD	PMID:35811015
Fbxo39	Mouse	sodium arsenite	increases expression	ISO	FBXO39 (Homo sapiens)	6480464	sodium arsenite results in increased expression of FBXO39 mRNA	CTD	PMID:38568856
Fbxo39	Mouse	titanium dioxide	increases methylation	EXP		6480464	titanium dioxide results in increased methylation of FBXO39 gene	CTD	PMID:35295148
Fbxo39	Mouse	trichloroethene	decreases expression	ISO	Fbxo39 (Rattus norvegicus)	6480464	Trichloroethylene results in decreased expression of FBXO39 mRNA	CTD	PMID:33387578
Fbxo39	Mouse	triptonide	increases expression	EXP		6480464	triptonide results in increased expression of FBXO39 mRNA	CTD	PMID:33045310
Fbxo39	Mouse	valproic acid	affects expression	EXP		6480464	Valproic Acid affects the expression of FBXO39 mRNA	CTD	PMID:17963808
Fbxo39	Mouse	vancomycin	decreases expression	EXP		6480464	Vancomycin results in decreased expression of FBXO39 mRNA	CTD	PMID:18930951

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo39	Mouse	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	involved_in	IBA	PANTHER:PTN000842407 and UniProtKB:Q5XUX0	2290270		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo39	Mouse	SCF ubiquitin ligase complex	part_of	IBA	PANTHER:PTN000842407 and UniProtKB:Q5XUX0	2290270		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo39	Mouse	molecular_function	enables	ND		2290270		MGI	GO_REF:0000015
Fbxo39	Mouse	protein binding	enables	ISO	UniProtKB:Q6FHY5	9068941	PMID:32296183	IntAct	PMID:32296183

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:11217851	PMID:12466851	PMID:15520277	PMID:21267068	PMID:21677750	PMID:21873635	PMID:37196079

Fbxo39
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	72,205,270 - 72,210,245 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	72,205,270 - 72,210,242 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	72,314,444 - 72,319,419 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	72,314,444 - 72,319,416 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	72,127,946 - 72,132,921 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	72,130,285 - 72,135,614 (+)	NCBI		MGSCv36	mm8
Celera	11	79,836,076 - 79,841,061 (+)	NCBI		Celera
Cytogenetic Map	11	B4	NCBI
cM Map	11	44.0	NCBI

FBXO39
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	6,776,215 - 6,787,646 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	6,776,215 - 6,797,101 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	6,679,534 - 6,690,965 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	6,620,296 - 6,631,689 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	6,620,295 - 6,631,688	NCBI
Celera	17	6,705,336 - 6,716,755 (+)	NCBI		Celera
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	6,575,114 - 6,586,529 (+)	NCBI		HuRef
CHM1_1	17	6,689,770 - 6,701,182 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	6,676,858 - 6,688,291 (+)	NCBI		T2T-CHM13v2.0

Fbxo39
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	57,428,259 - 57,433,468 (+)	NCBI		GRCr8
mRatBN7.2	10	56,929,699 - 56,934,911 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	56,932,297 - 56,934,906 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	61,595,293 - 61,597,907 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	61,083,769 - 61,086,383 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	56,582,858 - 56,585,472 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	58,874,028 - 58,878,445 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	58,875,826 - 58,878,445 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	58,614,436 - 58,618,838 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	59,200,071 - 59,202,685 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	59,198,758 - 59,216,308 (+)	NCBI
Celera	10	56,061,327 - 56,063,941 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Fbxo39
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	12,257,700 - 12,264,977 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	12,257,700 - 12,264,977 (+)	NCBI	ChiLan1.0	ChiLan1.0

FBXO39
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	14,369,072 - 14,384,880 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	16,335,235 - 16,347,135 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	6,806,312 - 6,818,183 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	6,795,514 - 6,806,969 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	6,795,514 - 6,806,969 (+)	Ensembl	panpan1.1		panPan2

FBXO39
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	30,619,510 - 30,624,377 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	30,619,794 - 30,624,493 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	5	30,720,859 - 30,726,202 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	30,720,734 - 30,723,697 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	30,687,201 - 30,692,533 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	30,645,755 - 30,651,096 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	30,818,889 - 30,824,231 (-)	NCBI		UU_Cfam_GSD_1.0

Fbxo39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	54,662,294 - 54,668,954 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936677	1,232,228 - 1,235,440 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936677	1,232,228 - 1,235,440 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO39
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	50,635,905 - 50,640,213 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	50,635,915 - 50,723,841 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	52,636,192 - 52,709,663 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO39
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	6,137,561 - 6,152,853 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	6,141,561 - 6,150,401 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	15,290,221 - 15,298,429 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxo39
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	7,262,539 - 7,269,946 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	7,263,219 - 7,269,847 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Fbxo39
89 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	124
Count of miRNA genes:	122
Interacting mature miRNAs:	123
Transcripts:	ENSMUST00000108504
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68190826	101890826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66733420	100733652	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44630038	113058009	Mouse
1558812	Rafar_m	retinoic acid induced forelimb autopod reduction (mouse)			Not determined		11	70691198	104691366	Mouse
4141875	Etax9_m	ethanol induced ataxia 9 (mouse)			Not determined			55284985	72209927	Mouse
1300765	Bbaa4_m	B.burgdorferi-associated arthritis 4 (mouse)			Not determined		11	46185167	80185262	Mouse
1301404	Sbmd4_m	spinal bone mineral density 4 (mouse)			Not determined		11	72019649	106019734	Mouse
1302021	Nidd1n_m	non-insulin-dependent diabetes mellitus 1 in NSY (mouse)			Not determined		11	45165873	79978324	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56864027	114157957	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58719266	85066529	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45708581	89818733	Mouse
1301681	Sle13_m	systematic lupus erythematosus susceptibility 13 (mouse)			Not determined		11	70691198	104691366	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66733420	100733652	Mouse
4141339	Nilac2_m	nicotine induced locomotor activity 2 (mouse)			Not determined		11	70691198	104691366	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64830336	98830473	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	3950000	88890826	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52494385	86494385	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64830336	98830473	Mouse
36049792	Ars5_m	antibody response to SARS-CoV 5, day 7, IgM (mouse)					11	68990826	72490826	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	3950000	94890826	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57754660	91754758	Mouse
10053682	Eae45_m	experimental allergic encephalomyelitis susceptibility 45 (mouse)			Not determined		11	58490555	74754758	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58508030	87695238	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	35890827	84890826	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64830336	98830473	Mouse
11532699	Sluc36b_m	susceptibility to lung cancer 36b (mouse)					11	42256617	76256730	Mouse
11532698	Sluc36a_m	susceptibility to lung cancer 36a (mouse)					11	42256617	76256730	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53390588	87390737	Mouse
1300651	Pcyts3_m	plasmacytoma susceptibility 3 (mouse)			Not determined		11	70691198	104691366	Mouse
4141830	Pregq1_m	pregnancy QTL 1 (mouse)			Not determined		11	54126752	83733652	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66733420	100733652	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6880277	89019734	Mouse
35673314	Ari2_m	antibody response to influenza 2, day 10, IgG3 (mouse)					11	68990826	72490826	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12268637	118022724	Mouse
1301328	Mol4_m	modifier of LPS-response 4 (mouse)			Not determined		11	36282577	83481356	Mouse
1301078	Alcp2_m	alcohol preference locus 2 (mouse)			Not determined		11	72209796	84731462	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21807364	95881231	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66733420	100733652	Mouse
4142316	Ity2b_m	immunity to S. typhimurium 2b (mouse)			Not determined		11	67078191	79813912	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62156005	96156153	Mouse
36049778	Ars6_m	antibody response to SARS-CoV 6, day 15, IgM (mouse)					11	68990826	72490826	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50078191	84078411	Mouse
36049779	Ars7_m	antibody response to SARS-CoV 7, day 29, IgG1 (mouse)					11	68990826	72490826	Mouse
36049790	Ars3_m	antibody response to SARS-CoV 3, day 7, IgG2b (mouse)					11	68990826	72490826	Mouse
36049791	Ars4_m	antibody response to SARS-CoV 4, day 7, IgG3 (mouse)					11	68990826	72490826	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66733420	100733652	Mouse
36049788	Ars1_m	antibody response to SARS-CoV 1, day 7, IgG1 (mouse)					11	68990826	72490826	Mouse
36049789	Ars2_m	antibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)					11	68990826	72490826	Mouse
36049786	Ars10_m	antibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)					11	68990826	72490826	Mouse
36049787	Ars11_m	antibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)					11	68990826	72490826	Mouse
36049784	Ars8_m	antibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)					11	68990826	72490826	Mouse
36049785	Ars9_m	antibody response to SARS-CoV 9, day 29, IgM (mouse)					11	68990826	72490826	Mouse
4142300	Ctrq3_m	C. trachomatis resistance QTL 3 (mouse)			Not determined		11	44630038	76854757	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66733420	100733652	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61686820	88699728	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62590826	109390826	Mouse
1301988	Bmd11_m	bone mineral density 11 (mouse)			Not determined		11	46319407	80319522	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19124204	96897826	Mouse
1301999	Lmr15_m	leishmaniasis resistance 15 (mouse)			Not determined		11	63319407	81830473	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63319407	94063918	Mouse
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3250000	72690826	Mouse

D11Mit219

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	72,318,970 - 72,319,101	UniSTS	GRCm38
MGSCv37	11	72,132,472 - 72,132,603	UniSTS	GRCm37
Celera	11	79,840,594 - 79,840,743	UniSTS
Cytogenetic Map	11	B4	UniSTS
cM Map	11	43.0	UniSTS
Whitehead Genetic	11	40.4	UniSTS
Whitehead/MRC_RH	11	920.27	UniSTS
Whitehead_YAC	11		UniSTS

AU027889

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	72,319,002 - 72,319,150	UniSTS	GRCm38
MGSCv37	11	72,132,504 - 72,132,652	UniSTS	GRCm37
Celera	11	79,840,626 - 79,840,792	UniSTS
Cytogenetic Map	11	B4	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_001099688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006533901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006533902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AL929071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AV040000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU937284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR519476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000108504 ⟹ ENSMUSP00000104144

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	11	72,205,270 - 72,210,242 (+)	Ensembl
GRCm38.p6 Ensembl	11	72,314,444 - 72,319,416 (+)	Ensembl

RefSeq Acc Id:

NM_001099688 ⟹ NP_001093158

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	72,205,270 - 72,210,245 (+)	NCBI
GRCm38	11	72,314,444 - 72,319,419 (+)	NCBI
MGSCv37	11	72,127,946 - 72,132,921 (+)	RGD
Celera	11	79,836,076 - 79,841,061 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GATGCTCTTGGAGTCGGCGTGGGAGCAGCAGCGCGGGCAGAGGGGCAGGCGCGCTCCGCGTCCCTGCAGCCCGAGCCGGGCGCAGCGATCCGAGAACACGTGACTGTATTCTTTCCCCATTTGGGGAA
GCCCTGCTCACCACACCACTACGCTGTACATCAGGGTCCTTTGATGGATGAAGACTGTGAAGTGACCCAGCTCCAAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGTGCCTGCGACGTGTTTTCT
GGTGGCTGGGAGACAGGGACAGGTCCAGAGCTGCCCTGGTCTGCAGAAAGTGGAACCAGATTATGTACTCAGCTGACCTCTGGCGATACAGGACCATCACGTTCAGCGGAAGGCCGTCCAGGGTACAC
GCATCTGAATTCGAGTCGGCACTGTGGTACATTAAGAAATTTGGCCGATACCTGGAACACTTGGAAATCAAGTTCCTGAACCCTTACAATGCCGTCTTGACCAAAAAGTTCCAGGTCACCATGCGAGG
CCTCCTGTCATGCCTGGGCAAGAGTAACAACCGCCTGCGGTCACTCTCTATCCAACACCTGGAGCTGGATCGGCTGGTCTGGAGAAATAGCATTAGGGGTTCACTCATCAAGAGCCTGAGTTTTTTCT
TAAAGAAAATGGGCAAACACCTGGACCATCTCAGCCTGAAAGGAGCCCGGCTGACAGTGGAGCAAGGCTGCCACATCCTCAACTCCCTGAGCTACATGCAGAATGAGAACATGGCTTCAGAGCTCAAC
ATTGAAGACTTCTTCAGCCATCACCTGGCTGTCTATGGCAGCTCCCAGTTCAACAAGGCCATGGCCACCTTCCGCAACTTGACATTCCTAACCCTCAACTACAACTGTATCTCCGACGAGCTGCTCGA
GACCTTGAGCGAGAACAACGCCGGGACCCTCCGGACCATGAACATCAAATGCCACGTTCATGACCCTCACGGTCAGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGA
AGGTGAACTTCTTCTTTGAGCGGGTGATGAAATATGAACGCCTGGCCCGGATCTTGCTGCAGGAGATTCCAGTCAGGAGCATCAGCCTGAGGAGTTGCTATTTCAGTGACCCGGACTGGTCCATGCGG
CCCACTCTGACAGACCTCCTGCCCACCTTCCGGAACACCCTGCAGAAGTTAACGTTCGAGTTCAACAATAATCACGAGTCTCTAGATGAGCAGCTGCATCTCCTCATCTTGGCCTGTCGGAAGCTGTT
TTACTTCAAAATCTGGGCTTTCCTGGACGTTAAGTTTGTGGAGCGGATCCTGAAGAGCCAGGAGGAAGGGCAGTGCTCCCTGCATACACTGAAGGTGAGAATTTATACAAACCGATATGAGACAAATG
AAGAGGACAGGACCCTACGGGAAATTTACAGGAAATACAGAAAGCTGATCGATTCAGAACTTAACTATTTTGTCGTCGCCTACCCCATGATGTAAAGAGTGCTCTCCAGAGGAAGACATCTAGATGCA
CTTTGAACCTGAAAACCTGGTTCTCAGTGAATTAGATTTGGGGCTCCCGTGCCCTCATTCCTTTTTCTTCTCTCTTCTTTAGCCAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTG
GTGATGGCAAGGTTCCAAGCATCTTTAAAGTGCTATCTTTACCAACA

hide sequence

RefSeq Acc Id:

XM_006533901 ⟹ XP_006533964

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	72,205,293 - 72,210,245 (+)	NCBI
GRCm38	11	72,314,467 - 72,319,419 (+)	NCBI

Sequence:

show sequence

AGCAGCAGCGCGGGCAGAGGGGCAGGCGCGCTCCGCGTCCCTGCAGCCCGAGCCGGGCGCAGCG
ATCCGGTAACGGGTGGCCCGAAGCACCCACGCACCAGGAGGGCAGTGGTGGCCCCGCACAGCCGCTGGGCCCGCATGGGAGGGGCACGCCGCCCTGGTGACGGGACAGTCTTAAGTTTCCCTCGCTGG
TTGGCAGCTGTGTCATATTATGGTGGACCAAGCCCAGGAACTATATAAAGCTGCAGCTGCAATCCTGGCTATCCTACAATAAGAGAAGAAGTATAAACAGAAGAGACCTCAGAATCTCTTGCACTATC
CAATGACAAACGAGATCCTGTTTCAAGGTGGAAGAGAACACGTGACTGTATTCTTTCCCCATTTGGGGAAGCCCTGCTCACCACACCACTACGCTGTACATCAGGGTCCTTTGATGGATGAAGACTGT
GAAGTGACCCAGCTCCAAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGTGCCTGCGACGTGTTTTCTGGTGGCTGGGAGACAGGGACAGGTCCAGAGCTGCCCTGGTCTGCAGAAAGTGGAACCA
GATTATGTACTCAGCTGACCTCTGGCGATACAGGACCATCACGTTCAGCGGAAGGCCGTCCAGGGTACACGCATCTGAATTCGAGTCGGCACTGTGGTACATTAAGAAATTTGGCCGATACCTGGAAC
ACTTGGAAATCAAGTTCCTGAACCCTTACAATGCCGTCTTGACCAAAAAGTTCCAGGTCACCATGCGAGGCCTCCTGTCATGCCTGGGCAAGAGTAACAACCGCCTGCGGTCACTCTCTATCCAACAC
CTGGAGCTGGATCGGCTGGTCTGGAGAAATAGCATTAGGGGTTCACTCATCAAGAGCCTGAGTTTTTTCTTAAAGAAAATGGGCAAACACCTGGACCATCTCAGCCTGAAAGGAGCCCGGCTGACAGT
GGAGCAAGGCTGCCACATCCTCAACTCCCTGAGCTACATGCAGAATGAGAACATGGCTTCAGAGCTCAACATTGAAGACTTCTTCAGCCATCACCTGGCTGTCTATGGCAGCTCCCAGTTCAACAAGG
CCATGGCCACCTTCCGCAACTTGACATTCCTAACCCTCAACTACAACTGTATCTCCGACGAGCTGCTCGAGACCTTGAGCGAGAACAACGCCGGGACCCTCCGGACCATGAACATCAAATGCCACGTT
CATGACCCTCACGGTCAGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCAGCAACCTGAAGGTGAACTTCTTCTTTGAGCGGGTGATGAAATATGAACGCCTGGCCCGGATCTTGCT
GCAGGAGATTCCAGTCAGGAGCATCAGCCTGAGGAGTTGCTATTTCAGTGACCCGGACTGGTCCATGCGGCCCACTCTGACAGACCTCCTGCCCACCTTCCGGAACACCCTGCAGAAGTTAACGTTCG
AGTTCAACAATAATCACGAGTCTCTAGATGAGCAGCTGCATCTCCTCATCTTGGCCTGTCGGAAGCTGTTTTACTTCAAAATCTGGGCTTTCCTGGACGTTAAGTTTGTGGAGCGGATCCTGAAGAGC
CAGGAGGAAGGGCAGTGCTCCCTGCATACACTGAAGGTGAGAATTTATACAAACCGATATGAGACAAATGAAGAGGACAGGACCCTACGGGAAATTTACAGGAAATACAGAAAGCTGATCGATTCAGA
ACTTAACTATTTTGTCGTCGCCTACCCCATGATGTAAAGAGTGCTCTCCAGAGGAAGACATCTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGTGAATTAGATTTGGGGCTCCCGTGCCCTCAT
TCCTTTTTCTTCTCTCTTCTTTAGCCAGTTCCACACCATCATGACCAGCCTTGTGAAGGCTGGGCTGGTGGTGATGGCAAGGTTCCAAGCATCTTTAAAGTGCTATCTTTACCAACA

hide sequence

RefSeq Acc Id:

XM_006533902 ⟹ XP_006533965

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	72,205,293 - 72,210,245 (+)	NCBI
GRCm38	11	72,314,467 - 72,319,419 (+)	NCBI

Sequence:

show sequence

AGCAGCAGCGCGGGCAGAGGGGCAGGCGCGCTCCGCGTCCCTGCAGCCCGAGCCGGGCGCAGCGATCCGGTAACGGGTGGCCCGAAGCACCCACGCACCAGGAGGGCAGTGGTGGCCCCGCACAGCCG
CTGGGCCCGCATGGGAGGGGCACGCCGCCCTGGTGACGGGACAGTCTTAAGTTTCCCTCGCTGGTTGGCAGCTGTGTCATATTATGGTGGACCAAGCCCAGAGAACACGTGACTGTATTCTTTCCCCA
TTTGGGGAAGCCCTGCTCACCACACCACTACGCTGTACATCAGGGTCCTTTGATGGATGAAGACTGTGAAGTGACCCAGCTCCAAGAGCAGAGCTGCTGGGCCACTCTGCCAGATGTGTGCCTGCGAC
GTGTTTTCTGGTGGCTGGGAGACAGGGACAGGTCCAGAGCTGCCCTGGTCTGCAGAAAGTGGAACCAGATTATGTACTCAGCTGACCTCTGGCGATACAGGACCATCACGTTCAGCGGAAGGCCGTCC
AGGGTACACGCATCTGAATTCGAGTCGGCACTGTGGTACATTAAGAAATTTGGCCGATACCTGGAACACTTGGAAATCAAGTTCCTGAACCCTTACAATGCCGTCTTGACCAAAAAGTTCCAGGTCAC
CATGCGAGGCCTCCTGTCATGCCTGGGCAAGAGTAACAACCGCCTGCGGTCACTCTCTATCCAACACCTGGAGCTGGATCGGCTGGTCTGGAGAAATAGCATTAGGGGTTCACTCATCAAGAGCCTGA
GTTTTTTCTTAAAGAAAATGGGCAAACACCTGGACCATCTCAGCCTGAAAGGAGCCCGGCTGACAGTGGAGCAAGGCTGCCACATCCTCAACTCCCTGAGCTACATGCAGAATGAGAACATGGCTTCA
GAGCTCAACATTGAAGACTTCTTCAGCCATCACCTGGCTGTCTATGGCAGCTCCCAGTTCAACAAGGCCATGGCCACCTTCCGCAACTTGACATTCCTAACCCTCAACTACAACTGTATCTCCGACGA
GCTGCTCGAGACCTTGAGCGAGAACAACGCCGGGACCCTCCGGACCATGAACATCAAATGCCACGTTCATGACCCTCACGGTCAGGTAGTCTGGGGTATGTCTTGGGCCAAGTTGGCCAGGCAGGCCA
GCAACCTGAAGGTGAACTTCTTCTTTGAGCGGGTGATGAAATATGAACGCCTGGCCCGGATCTTGCTGCAGGAGATTCCAGTCAGGAGCATCAGCCTGAGGAGTTGCTATTTCAGTGACCCGGACTGG
TCCATGCGGCCCACTCTGACAGACCTCCTGCCCACCTTCCGGAACACCCTGCAGAAGTTAACGTTCGAGTTCAACAATAATCACGAGTCTCTAGATGAGCAGCTGCATCTCCTCATCTTGGCCTGTCG
GAAGCTGTTTTACTTCAAAATCTGGGCTTTCCTGGACGTTAAGTTTGTGGAGCGGATCCTGAAGAGCCAGGAGGAAGGGCAGTGCTCCCTGCATACACTGAAGGTGAGAATTTATACAAACCGATATG
AGACAAATGAAGAGGACAGGACCCTACGGGAAATTTACAGGAAATACAGAAAGCTGATCGATTCAGAACTTAACTATTTTGTCGTCGCCTACCCCATGATGTAAAGAGTGCTCTCCAGAGGAAGACAT
CTAGATGCACTTTGAACCTGAAAACCTGGTTCTCAGTGAATTAGATTTGGGGCTCCCGTGCCCTCATTCCTTTTTCTTCTCTCTTCTTTAGCCAGTTCCACACCATCATGACCAGCCTTGTGAAGGCT
GGGCTGGTGGTGATGGCAAGGTTCCAAGCATCTTTAAAGTGCTATCTTTACCAACA

hide sequence


Protein RefSeqs	NP_001093158	(Get FASTA)	NCBI Sequence Viewer
	XP_006533964	(Get FASTA)	NCBI Sequence Viewer
	XP_006533965	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000104144
	ENSMUSP00000104144.2
GenBank Protein	Q5NBU5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001093158 ⟸ NM_001099688

- UniProtKB:

Q5NBU5 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDEDCEVTQLQEQSCWATLPDVCLRRVFWWLGDRDRSRAALVCRKWNQIMYSADLWRYRTITFSGRPSRVHASEFESALWYIKKFGRYLEHLEIKFLNPYNAVLTKKFQVTMRGLLSCLGKSNNRLRS
LSIQHLELDRLVWRNSIRGSLIKSLSFFLKKMGKHLDHLSLKGARLTVEQGCHILNSLSYMQNENMASELNIEDFFSHHLAVYGSSQFNKAMATFRNLTFLTLNYNCISDELLETLSENNAGTLRTMN
IKCHVHDPHGQVVWGMSWAKLARQASNLKVNFFFERVMKYERLARILLQEIPVRSISLRSCYFSDPDWSMRPTLTDLLPTFRNTLQKLTFEFNNNHESLDEQLHLLILACRKLFYFKIWAFLDVKFVE
RILKSQEEGQCSLHTLKVRIYTNRYETNEEDRTLREIYRKYRKLIDSELNYFVVAYPMM

hide sequence

RefSeq Acc Id:

XP_006533964 ⟸ XM_006533901

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTNEILFQGGREHVTVFFPHLGKPCSPHHYAVHQGPLMDEDCEVTQLQEQSCWATLPDVCLRRV
FWWLGDRDRSRAALVCRKWNQIMYSADLWRYRTITFSGRPSRVHASEFESALWYIKKFGRYLEHLEIKFLNPYNAVLTKKFQVTMRGLLSCLGKSNNRLRSLSIQHLELDRLVWRNSIRGSLIKSLSF
FLKKMGKHLDHLSLKGARLTVEQGCHILNSLSYMQNENMASELNIEDFFSHHLAVYGSSQFNKAMATFRNLTFLTLNYNCISDELLETLSENNAGTLRTMNIKCHVHDPHGQVVWGMSWAKLARQASN
LKVNFFFERVMKYERLARILLQEIPVRSISLRSCYFSDPDWSMRPTLTDLLPTFRNTLQKLTFEFNNNHESLDEQLHLLILACRKLFYFKIWAFLDVKFVERILKSQEEGQCSLHTLKVRIYTNRYET
NEEDRTLREIYRKYRKLIDSELNYFVVAYPMM

hide sequence

RefSeq Acc Id:	XP_006533965 ⟸ XM_006533902
- Peptide Label:	isoform X2
- UniProtKB:	Q5NBU5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDEDCEVTQLQEQSCWATLPDVCLRRVFWWLGDRDRSRAALVCRKWNQIMYSADLWRYRTITFS GRPSRVHASEFESALWYIKKFGRYLEHLEIKFLNPYNAVLTKKFQVTMRGLLSCLGKSNNRLRSLSIQHLELDRLVWRNSIRGSLIKSLSFFLKKMGKHLDHLSLKGARLTVEQGCHILNSLSYMQNE NMASELNIEDFFSHHLAVYGSSQFNKAMATFRNLTFLTLNYNCISDELLETLSENNAGTLRTMNIKCHVHDPHGQVVWGMSWAKLARQASNLKVNFFFERVMKYERLARILLQEIPVRSISLRSCYFS DPDWSMRPTLTDLLPTFRNTLQKLTFEFNNNHESLDEQLHLLILACRKLFYFKIWAFLDVKFVERILKSQEEGQCSLHTLKVRIYTNRYETNEEDRTLREIYRKYRKLIDSELNYFVVAYPMM hide sequence

Ensembl Acc Id:

ENSMUSP00000104144 ⟸ ENSMUST00000108504

Protein Domains

F-box

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5NBU5-F1-model_v2	AlphaFold	Q5NBU5	1-443	view protein structure

RGD ID:

6820874

Promoter ID:

MM_KWN:8314

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour

Transcripts:

NM_001099688

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	72,127,571 - 72,128,071 (+)	MPROMDB

RGD ID:

8675432

Promoter ID:

EPDNEW_M15747

Type:

initiation region

Name:

Fbxo39_1

Description:

Mus musculus F-box protein 39 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	72,314,467 - 72,314,527	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000070388	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000108504	ENTREZGENE
	ENSMUST00000108504.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1280.50	UniProtKB/Swiss-Prot
	3.80.10.10	UniProtKB/Swiss-Prot
InterPro	F-box-like_dom_sf	UniProtKB/Swiss-Prot
	F-box_dom	UniProtKB/Swiss-Prot
	FBXO31/39	UniProtKB/Swiss-Prot
	LRR_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:628100	UniProtKB/Swiss-Prot
MGD	MGI:3505735	ENTREZGENE
NCBI Gene	628100	ENTREZGENE
PANTHER	F-BOX ONLY PROTEIN 39	UniProtKB/Swiss-Prot
	PTHR10706	UniProtKB/Swiss-Prot
Pfam	F-box-like	UniProtKB/Swiss-Prot
PhenoGen	Fbxo39	PhenoGen
PROSITE	FBOX	UniProtKB/Swiss-Prot
Superfamily-SCOP	RNI-like	UniProtKB/Swiss-Prot
	SSF81383	UniProtKB/Swiss-Prot
UniProt	FBX39_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-05	Fbxo39	F-box protein 39	1700010H23Rik	RIKEN cDNA 1700010H23 gene	Data merged from RGD:1609496	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar