Wdfy1 (WD repeat and FYVE domain containing 1) - Rat Genome Database

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Gene: Wdfy1 (WD repeat and FYVE domain containing 1) Mus musculus
Analyze
Symbol: Wdfy1
Name: WD repeat and FYVE domain containing 1
RGD ID: 1620804
MGI Page MGI
Description: Predicted to enable 1-phosphatidylinositol binding activity. Involved in positive regulation of toll-like receptor 3 signaling pathway and positive regulation of toll-like receptor 4 signaling pathway. Located in early endosome. Is expressed in embryo; extraembryonic component; placenta; and skin. Orthologous to human WDFY1 (WD repeat and FYVE domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700013B03Rik; 1700120F24Rik; FENS-1; Jr; Jr1; KIAA1435; mKIAA1435; WD repeat and FYVE domain-containing protein 1; WD40 and FYVE domain containing 1; WD40- and FYVE domain-containing protein 1; WDF1; ZFYVE17
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39179,679,979 - 79,753,764 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl179,679,979 - 79,753,860 (-)EnsemblGRCm39 Ensembl
GRCm38179,702,262 - 79,776,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl179,702,262 - 79,776,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37179,698,837 - 79,758,344 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36179,605,440 - 79,640,756 (-)NCBIMGSCv36mm8
Celera179,790,257 - 79,790,462 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map140.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell junction  (IEA,ISO)
cytosol  (IEA,ISO)
early endosome  (IBA,IDA,ISO)
Golgi apparatus  (IEA,ISO)
intracellular membrane-bounded organelle  (ISO)
nucleolus  (IEA,ISO)
nucleus  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:11700028   PMID:12466851   PMID:12477932   PMID:12520002   PMID:15782199  
PMID:15840001   PMID:16141072   PMID:16141073   PMID:16465591   PMID:17673451   PMID:18799693   PMID:18973680   PMID:19228596   PMID:21267068   PMID:21873635   PMID:23604909   PMID:25736436  
PMID:28106071   PMID:30097850   PMID:31015298   PMID:32398807   PMID:33127972   PMID:33378226   PMID:34137816   PMID:34161765   PMID:35011620   PMID:35121371   PMID:36241655   PMID:38355793  


Genomics

Comparative Map Data
Wdfy1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39179,679,979 - 79,753,764 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl179,679,979 - 79,753,860 (-)EnsemblGRCm39 Ensembl
GRCm38179,702,262 - 79,776,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl179,702,262 - 79,776,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37179,698,837 - 79,758,344 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36179,605,440 - 79,640,756 (-)NCBIMGSCv36mm8
Celera179,790,257 - 79,790,462 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map140.94NCBI
WDFY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382223,875,348 - 223,945,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2223,855,716 - 223,945,357 (-)EnsemblGRCh38hg38GRCh38
GRCh372224,740,065 - 224,810,052 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362224,448,309 - 224,518,296 (-)NCBINCBI36Build 36hg18NCBI36
Build 342224,565,569 - 224,635,557NCBI
Celera2218,505,977 - 218,575,969 (-)NCBICelera
Cytogenetic Map2q36.1NCBI
HuRef2216,592,701 - 216,661,805 (-)NCBIHuRef
CHM1_12224,746,548 - 224,816,548 (-)NCBICHM1_1
T2T-CHM13v2.02224,358,556 - 224,428,591 (-)NCBIT2T-CHM13v2.0
Wdfy1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8988,459,613 - 88,541,215 (-)NCBIGRCr8
mRatBN7.2981,034,852 - 81,092,823 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl981,034,849 - 81,092,775 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx989,464,594 - 89,522,539 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0994,593,490 - 94,651,433 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0992,976,004 - 93,033,955 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0985,477,070 - 85,528,885 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl985,475,841 - 85,528,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0985,228,597 - 85,280,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4979,010,150 - 79,059,470 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1979,193,571 - 79,242,889 (-)NCBI
Celera978,532,988 - 78,582,544 (-)NCBICelera
Cytogenetic Map9q34NCBI
Wdfy1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545310,101,576 - 10,149,710 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545310,101,576 - 10,148,205 (+)NCBIChiLan1.0ChiLan1.0
WDFY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213126,466,931 - 126,564,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B126,509,926 - 126,579,858 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B111,121,073 - 111,190,968 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B229,697,353 - 229,767,308 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B229,697,353 - 229,767,308 (-)Ensemblpanpan1.1panPan2
WDFY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13729,544,956 - 29,658,544 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3729,444,082 - 29,677,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3730,395,512 - 30,511,040 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03729,584,614 - 29,700,361 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3729,570,379 - 29,700,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13729,565,490 - 29,610,275 (-)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.13729,494,822 - 29,546,540 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03729,429,613 - 29,546,246 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03729,439,312 - 29,557,601 (-)NCBIUU_Cfam_GSD_1.0
LOC101955400
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303179,147,492 - 179,262,826 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365695,575,961 - 5,604,970 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365695,490,319 - 5,544,250 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365695,574,591 - 5,604,948 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDFY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15125,669,842 - 125,720,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115125,674,142 - 125,720,187 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215139,069,876 - 139,081,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDFY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110109,815,043 - 109,889,120 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10109,818,422 - 109,889,023 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604089,515,457 - 89,583,083 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdfy1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248231,353,621 - 1,401,160 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248231,353,601 - 1,405,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5192
Count of miRNA genes:719
Interacting mature miRNAs:923
Transcripts:ENSMUST00000048820, ENSMUST00000113510, ENSMUST00000113511, ENSMUST00000113512, ENSMUST00000113513, ENSMUST00000113514, ENSMUST00000113515, ENSMUST00000125641, ENSMUST00000127771, ENSMUST00000130714, ENSMUST00000138319, ENSMUST00000143368
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse

Markers in Region
Wdfy1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1C4UniSTS
cM Map140.94UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
BE197290  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38179,726,519 - 79,726,651UniSTSGRCm38
GRCm38179,719,077 - 79,719,209UniSTSGRCm38
MGSCv37179,723,094 - 79,723,226UniSTSGRCm37
MGSCv37179,715,652 - 79,715,784UniSTSGRCm37
Cytogenetic Map1C4UniSTS
Whitehead/MRC_RH11155.85UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001111279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006496543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017322387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC083910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC170750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE197290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ031098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000048820   ⟹   ENSMUSP00000040224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,704,120 - 79,739,486 (-)Ensembl
GRCm38.p6 Ensembl179,726,403 - 79,761,769 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113510   ⟹   ENSMUSP00000109138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,696,691 - 79,739,486 (-)Ensembl
GRCm38.p6 Ensembl179,718,974 - 79,761,769 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113511   ⟹   ENSMUSP00000109139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,696,691 - 79,739,486 (-)Ensembl
GRCm38.p6 Ensembl179,718,974 - 79,761,769 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113512   ⟹   ENSMUSP00000109140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,679,979 - 79,739,486 (-)Ensembl
GRCm38.p6 Ensembl179,702,262 - 79,761,769 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113513   ⟹   ENSMUSP00000109141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,679,979 - 79,739,486 (-)Ensembl
GRCm38.p6 Ensembl179,702,262 - 79,761,769 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113514   ⟹   ENSMUSP00000109142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,679,979 - 79,739,486 (-)Ensembl
GRCm38.p6 Ensembl179,702,262 - 79,761,769 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113515   ⟹   ENSMUSP00000109143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,679,979 - 79,739,486 (-)Ensembl
GRCm38.p6 Ensembl179,702,262 - 79,761,769 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125641   ⟹   ENSMUSP00000118431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,711,570 - 79,739,764 (-)Ensembl
GRCm38.p6 Ensembl179,733,853 - 79,762,047 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,696,880 - 79,700,373 (-)Ensembl
GRCm38.p6 Ensembl179,719,163 - 79,722,656 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130714
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,696,880 - 79,707,815 (-)Ensembl
GRCm38.p6 Ensembl179,719,163 - 79,730,098 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,704,322 - 79,707,815 (-)Ensembl
GRCm38.p6 Ensembl179,726,605 - 79,730,098 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143368   ⟹   ENSMUSP00000123303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,702,414 - 79,753,860 (-)Ensembl
GRCm38.p6 Ensembl179,724,697 - 79,776,143 (-)Ensembl
Ensembl Acc Id: ENSMUST00000186464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,711,337 - 79,739,438 (-)Ensembl
GRCm38.p6 Ensembl179,733,620 - 79,761,721 (-)Ensembl
Ensembl Acc Id: ENSMUST00000187005   ⟹   ENSMUSP00000139961
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl179,683,074 - 79,739,455 (-)Ensembl
GRCm38.p6 Ensembl179,705,357 - 79,761,738 (-)Ensembl
RefSeq Acc Id: NM_001111279   ⟹   NP_001104749
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,679,979 - 79,739,486 (-)NCBI
GRCm38179,702,262 - 79,761,769 (-)NCBI
MGSCv37179,698,837 - 79,758,344 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_027057   ⟹   NP_081333
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,704,120 - 79,739,486 (-)NCBI
GRCm38179,726,403 - 79,761,769 (-)NCBI
MGSCv37179,698,837 - 79,758,344 (-)RGD
Celera179,790,257 - 79,790,462 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496543   ⟹   XP_006496606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,679,979 - 79,700,603 (-)NCBI
GRCm38179,702,262 - 79,722,822 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017322387   ⟹   XP_017177876
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,700,727 - 79,739,759 (-)NCBI
GRCm38179,723,010 - 79,762,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242794   ⟹   XP_030098654
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,700,727 - 79,740,360 (-)NCBI
GRCm38179,723,010 - 79,762,643 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242799   ⟹   XP_030098659
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,700,727 - 79,740,187 (-)NCBI
GRCm38179,723,010 - 79,762,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030242801   ⟹   XP_030098661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,704,123 - 79,740,360 (-)NCBI
GRCm38179,726,406 - 79,762,643 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153456   ⟹   XP_036009349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,679,979 - 79,753,764 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785590
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39179,679,979 - 79,700,603 (-)NCBI
GRCm38179,702,262 - 79,722,819 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081333   ⟸   NM_027057
- Peptide Label: isoform 2
- UniProtKB: Q9DAD3 (UniProtKB/TrEMBL),   D3Z057 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104749   ⟸   NM_001111279
- Peptide Label: isoform 1
- UniProtKB: Q5DTX9 (UniProtKB/Swiss-Prot),   E9Q4P1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496606   ⟸   XM_006496543
- Peptide Label: isoform X1
- UniProtKB: Q8R3I5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017177876   ⟸   XM_017322387
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030098654   ⟸   XM_030242794
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030098659   ⟸   XM_030242799
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030098661   ⟸   XM_030242801
- Peptide Label: isoform X3
- UniProtKB: Q9DAD3 (UniProtKB/TrEMBL),   D3Z057 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000118431   ⟸   ENSMUST00000125641
Ensembl Acc Id: ENSMUSP00000123303   ⟸   ENSMUST00000143368
Ensembl Acc Id: ENSMUSP00000109139   ⟸   ENSMUST00000113511
Ensembl Acc Id: ENSMUSP00000109138   ⟸   ENSMUST00000113510
Ensembl Acc Id: ENSMUSP00000109141   ⟸   ENSMUST00000113513
Ensembl Acc Id: ENSMUSP00000109140   ⟸   ENSMUST00000113512
Ensembl Acc Id: ENSMUSP00000109143   ⟸   ENSMUST00000113515
Ensembl Acc Id: ENSMUSP00000109142   ⟸   ENSMUST00000113514
Ensembl Acc Id: ENSMUSP00000040224   ⟸   ENSMUST00000048820
Ensembl Acc Id: ENSMUSP00000139961   ⟸   ENSMUST00000187005
RefSeq Acc Id: XP_036009349   ⟸   XM_036153456
- Peptide Label: isoform X4
- UniProtKB: E9Q4P1 (UniProtKB/Swiss-Prot),   Q5DTX9 (UniProtKB/Swiss-Prot)
Protein Domains
FYVE-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q4P1-F1-model_v2 AlphaFold E9Q4P1 1-410 view protein structure

Promoters
RGD ID:6818713
Promoter ID:MM_KWN:1297
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000050862,   OTTMUST00000050876
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36179,726,886 - 79,727,386 (-)MPROMDB
RGD ID:6818712
Promoter ID:MM_KWN:1298
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4
Transcripts:ENSMUST00000113510,   ENSMUST00000113511,   ENSMUST00000113513,   ENSMUST00000113514,   ENSMUST00000113515,   NM_001111279,   NM_027057,   OTTMUST00000050860
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36179,757,966 - 79,758,466 (-)MPROMDB
RGD ID:6874206
Promoter ID:EPDNEW_M554
Type:initiation region
Name:Wdfy1_1
Description:Mus musculus WD repeat and FYVE domain containing 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38179,761,709 - 79,761,769EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916618 AgrOrtholog
Ensembl Genes ENSMUSG00000073643 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048820 ENTREZGENE
  ENSMUST00000048820.14 UniProtKB/TrEMBL
  ENSMUST00000113510.8 UniProtKB/TrEMBL
  ENSMUST00000113511.8 UniProtKB/TrEMBL
  ENSMUST00000113512 ENTREZGENE
  ENSMUST00000113512.8 UniProtKB/Swiss-Prot
  ENSMUST00000113513 ENTREZGENE
  ENSMUST00000113513.8 UniProtKB/Swiss-Prot
  ENSMUST00000113514.8 UniProtKB/Swiss-Prot
  ENSMUST00000113515.8 UniProtKB/Swiss-Prot
  ENSMUST00000125641.2 UniProtKB/TrEMBL
  ENSMUST00000143368.8 UniProtKB/TrEMBL
  ENSMUST00000187005.7 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDFY1/WDFY2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDFY1_FYVE UniProtKB/Swiss-Prot
  Znf_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69368 UniProtKB/Swiss-Prot
MGD MGI:1916618 ENTREZGENE
NCBI Gene 69368 ENTREZGENE
PANTHER PTHR46189 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT AND FYVE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdfy1 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FYVE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WPX9_MOUSE UniProtKB/TrEMBL
  D3YWG9_MOUSE UniProtKB/TrEMBL
  D3Z057 ENTREZGENE, UniProtKB/TrEMBL
  E9Q4P1 ENTREZGENE
  Q5DTX9 ENTREZGENE
  Q8R3I5 ENTREZGENE, UniProtKB/TrEMBL
  Q9DAD3 ENTREZGENE, UniProtKB/TrEMBL
  WDFY1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5DTX9 UniProtKB/Swiss-Prot