WDFY1 (WD repeat and FYVE domain containing 1) - Rat Genome Database

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Gene: WDFY1 (WD repeat and FYVE domain containing 1) Canis lupus familiaris
Analyze
Symbol: WDFY1
Name: WD repeat and FYVE domain containing 1
RGD ID: 12172050
Description: ENCODES a protein that exhibits 1-phosphatidylinositol binding (inferred); clathrin adaptor activity (inferred); metal ion binding (inferred); INVOLVED IN intracellular protein transport (inferred); positive regulation of toll-like receptor 3 signaling pathway (inferred); positive regulation of toll-like receptor 4 signaling pathway (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN AP-1 adaptor complex (inferred); cell junction (inferred); clathrin-coated pit (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat and FYVE domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13729,544,956 - 29,658,544 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3729,444,082 - 29,677,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3730,395,512 - 30,511,040 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03729,584,614 - 29,700,361 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3729,570,379 - 29,700,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13729,565,490 - 29,610,275 (-)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.13729,494,822 - 29,546,540 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03729,429,613 - 29,546,246 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03729,439,312 - 29,557,601 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WDFY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13729,544,956 - 29,658,544 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3729,444,082 - 29,677,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3730,395,512 - 30,511,040 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03729,584,614 - 29,700,361 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3729,570,379 - 29,700,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13729,565,490 - 29,610,275 (-)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.13729,494,822 - 29,546,540 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03729,429,613 - 29,546,246 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03729,439,312 - 29,557,601 (-)NCBIUU_Cfam_GSD_1.0
WDFY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382223,875,348 - 223,945,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2223,855,716 - 223,945,357 (-)EnsemblGRCh38hg38GRCh38
GRCh372224,740,065 - 224,810,052 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362224,448,309 - 224,518,296 (-)NCBINCBI36Build 36hg18NCBI36
Build 342224,565,569 - 224,635,557NCBI
Celera2218,505,977 - 218,575,969 (-)NCBICelera
Cytogenetic Map2q36.1NCBI
HuRef2216,592,701 - 216,661,805 (-)NCBIHuRef
CHM1_12224,746,548 - 224,816,548 (-)NCBICHM1_1
T2T-CHM13v2.02224,358,556 - 224,428,591 (-)NCBIT2T-CHM13v2.0
Wdfy1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39179,679,979 - 79,753,764 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl179,679,979 - 79,753,860 (-)EnsemblGRCm39 Ensembl
GRCm38179,702,262 - 79,776,143 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl179,702,262 - 79,776,143 (-)EnsemblGRCm38mm10GRCm38
MGSCv37179,698,837 - 79,758,344 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36179,605,440 - 79,640,756 (-)NCBIMGSCv36mm8
Celera179,790,257 - 79,790,462 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map140.94NCBI
Wdfy1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8988,459,613 - 88,541,215 (-)NCBIGRCr8
mRatBN7.2981,034,852 - 81,092,823 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl981,034,849 - 81,092,775 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx989,464,594 - 89,522,539 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0994,593,490 - 94,651,433 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0992,976,004 - 93,033,955 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0985,477,070 - 85,528,885 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl985,475,841 - 85,528,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0985,228,597 - 85,280,673 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4979,010,150 - 79,059,470 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1979,193,571 - 79,242,889 (-)NCBI
Celera978,532,988 - 78,582,544 (-)NCBICelera
Cytogenetic Map9q34NCBI
Wdfy1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545310,101,576 - 10,149,710 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545310,101,576 - 10,148,205 (+)NCBIChiLan1.0ChiLan1.0
WDFY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213126,466,931 - 126,564,889 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B126,509,926 - 126,579,858 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B111,121,073 - 111,190,968 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B229,697,353 - 229,767,308 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B229,697,353 - 229,767,308 (-)Ensemblpanpan1.1panPan2
LOC101955400
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303179,147,492 - 179,262,826 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365695,575,961 - 5,604,970 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365695,490,319 - 5,544,250 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365695,574,591 - 5,604,948 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDFY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15125,669,842 - 125,720,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115125,674,142 - 125,720,187 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215139,069,876 - 139,081,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDFY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110109,815,043 - 109,889,120 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10109,818,422 - 109,889,023 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604089,515,457 - 89,583,083 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdfy1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248231,353,621 - 1,401,160 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248231,353,601 - 1,405,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WDFY1
2321 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 16 4 4 12 8 10 4
Low 4 5 6 6 2 6 2 6 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022415236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038448090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038463893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038522075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038585881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038650258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002623709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005308548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005318596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005385453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005419199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000025694   ⟹   ENSCAFP00000023862
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3729,561,863 - 29,658,532 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000025711   ⟹   ENSCAFP00000023878
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3729,632,565 - 29,677,312 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000067000   ⟹   ENSCAFP00000044204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3729,444,082 - 29,576,767 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000070626   ⟹   ENSCAFP00000053840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3729,632,565 - 29,676,696 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000072959   ⟹   ENSCAFP00000052722
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3729,632,565 - 29,658,532 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000073440   ⟹   ENSCAFP00000065070
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3729,630,439 - 29,658,532 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082948   ⟹   ENSCAFP00000054334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3729,545,914 - 29,658,532 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000086770   ⟹   ENSCAFP00000049532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3729,587,924 - 29,658,532 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845031842   ⟹   ENSCAFP00845024914
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3729,570,379 - 29,637,205 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032111   ⟹   ENSCAFP00845025108
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3729,574,210 - 29,637,205 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032177   ⟹   ENSCAFP00845025155
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3729,586,333 - 29,700,372 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032295   ⟹   ENSCAFP00845025247
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3729,586,333 - 29,637,205 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032373   ⟹   ENSCAFP00845025304
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3729,591,390 - 29,636,468 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845032405   ⟹   ENSCAFP00845025333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3729,655,461 - 29,700,372 (-)Ensembl
RefSeq Acc Id: XM_038448087   ⟹   XP_038304015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03729,584,614 - 29,700,359 (-)NCBI
RefSeq Acc Id: XM_038448088   ⟹   XP_038304016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03729,591,260 - 29,700,361 (-)NCBI
RefSeq Acc Id: XM_038448089   ⟹   XP_038304017
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03729,655,454 - 29,700,359 (-)NCBI
RefSeq Acc Id: XM_038448090   ⟹   XP_038304018
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03729,584,614 - 29,636,477 (-)NCBI
RefSeq Acc Id: XM_038463890   ⟹   XP_038319818
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3730,395,512 - 30,511,037 (-)NCBI
RefSeq Acc Id: XM_038463891   ⟹   XP_038319819
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3730,402,149 - 30,511,040 (-)NCBI
RefSeq Acc Id: XM_038463892   ⟹   XP_038319820
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3730,466,221 - 30,511,038 (-)NCBI
RefSeq Acc Id: XM_038463893   ⟹   XP_038319821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3730,395,512 - 30,447,208 (-)NCBI
RefSeq Acc Id: XM_038522074   ⟹   XP_038378002
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13729,565,490 - 29,610,275 (-)NCBI
RefSeq Acc Id: XM_038522075   ⟹   XP_038378003
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13729,494,822 - 29,546,540 (-)NCBI
RefSeq Acc Id: XM_038585878   ⟹   XP_038441806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03729,439,312 - 29,557,601 (-)NCBI
RefSeq Acc Id: XM_038585879   ⟹   XP_038441807
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03729,445,950 - 29,557,601 (-)NCBI
RefSeq Acc Id: XM_038585880   ⟹   XP_038441808
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03729,510,430 - 29,557,601 (-)NCBI
RefSeq Acc Id: XM_038585881   ⟹   XP_038441809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03729,439,312 - 29,491,468 (-)NCBI
RefSeq Acc Id: XM_038650255   ⟹   XP_038506183
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03729,429,613 - 29,546,246 (-)NCBI
RefSeq Acc Id: XM_038650256   ⟹   XP_038506184
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03729,436,250 - 29,546,246 (-)NCBI
RefSeq Acc Id: XM_038650257   ⟹   XP_038506185
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03729,500,921 - 29,546,246 (-)NCBI
RefSeq Acc Id: XM_038650258   ⟹   XP_038506186
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03729,429,613 - 29,481,966 (-)NCBI
RefSeq Acc Id: XR_005308548
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03729,594,425 - 29,700,361 (-)NCBI
RefSeq Acc Id: XR_005318596
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3730,405,310 - 30,511,039 (-)NCBI
RefSeq Acc Id: XR_005385453
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03729,449,107 - 29,557,601 (-)NCBI
RefSeq Acc Id: XR_005419199
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03729,439,415 - 29,546,246 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038304015 (Get FASTA)   NCBI Sequence Viewer  
  XP_038304016 (Get FASTA)   NCBI Sequence Viewer  
  XP_038304017 (Get FASTA)   NCBI Sequence Viewer  
  XP_038304018 (Get FASTA)   NCBI Sequence Viewer  
  XP_038319818 (Get FASTA)   NCBI Sequence Viewer  
  XP_038319819 (Get FASTA)   NCBI Sequence Viewer  
  XP_038319820 (Get FASTA)   NCBI Sequence Viewer  
  XP_038319821 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378002 (Get FASTA)   NCBI Sequence Viewer  
  XP_038378003 (Get FASTA)   NCBI Sequence Viewer  
  XP_038441806 (Get FASTA)   NCBI Sequence Viewer  
  XP_038441807 (Get FASTA)   NCBI Sequence Viewer  
  XP_038441808 (Get FASTA)   NCBI Sequence Viewer  
  XP_038441809 (Get FASTA)   NCBI Sequence Viewer  
  XP_038506183 (Get FASTA)   NCBI Sequence Viewer  
  XP_038506184 (Get FASTA)   NCBI Sequence Viewer  
  XP_038506185 (Get FASTA)   NCBI Sequence Viewer  
  XP_038506186 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000023862.5
  ENSCAFP00000023878.5
  ENSCAFP00000044204.2
  ENSCAFP00000054334.2
  ENSCAFP00000068218.1
  ENSCAFP00030023724.1
  ENSCAFP00030023852.1
  ENSCAFP00030023873.1
  ENSCAFP00030023963.1
  ENSCAFP00030023995.1
  ENSCAFP00030024067.1
  ENSCAFP00040019294.1
  ENSCAFP00040019299.1
  ENSCAFP00040019343.1
  ENSCAFP00845024914.1
  ENSCAFP00845025108.1
  ENSCAFP00845025155
  ENSCAFP00845025155.1
  ENSCAFP00845025247.1
  ENSCAFP00845025304.1
  ENSCAFP00845025333
  ENSCAFP00845025333.1
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000023862   ⟸   ENSCAFT00000025694
RefSeq Acc Id: ENSCAFP00000023878   ⟸   ENSCAFT00000025711
RefSeq Acc Id: ENSCAFP00000053840   ⟸   ENSCAFT00000070626
RefSeq Acc Id: ENSCAFP00000065070   ⟸   ENSCAFT00000073440
RefSeq Acc Id: ENSCAFP00000049532   ⟸   ENSCAFT00000086770
RefSeq Acc Id: ENSCAFP00000044204   ⟸   ENSCAFT00000067000
RefSeq Acc Id: ENSCAFP00000052722   ⟸   ENSCAFT00000072959
RefSeq Acc Id: ENSCAFP00000054334   ⟸   ENSCAFT00000082948
RefSeq Acc Id: XP_038378003   ⟸   XM_038522075
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038378002   ⟸   XM_038522074
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038506183   ⟸   XM_038650255
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038506186   ⟸   XM_038650258
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038506184   ⟸   XM_038650256
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038506185   ⟸   XM_038650257
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038304015   ⟸   XM_038448087
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NEZ8 (UniProtKB/TrEMBL),   A0A8I3P6G0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038304018   ⟸   XM_038448090
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LSB3 (UniProtKB/TrEMBL),   A0A8C0RKE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038304016   ⟸   XM_038448088
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N9Z6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038304017   ⟸   XM_038448089
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NAE2 (UniProtKB/TrEMBL),   A0A8C0R8I5 (UniProtKB/TrEMBL),   A0A8I3PB02 (UniProtKB/TrEMBL),   A0A8C0SCB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038319818   ⟸   XM_038463890
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NEZ8 (UniProtKB/TrEMBL),   A0A8I3P6G0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038319821   ⟸   XM_038463893
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LSB3 (UniProtKB/TrEMBL),   A0A8C0RKE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038319819   ⟸   XM_038463891
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N9Z6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038319820   ⟸   XM_038463892
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NAE2 (UniProtKB/TrEMBL),   A0A8C0R8I5 (UniProtKB/TrEMBL),   A0A8I3PB02 (UniProtKB/TrEMBL),   A0A8C0SCB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038441806   ⟸   XM_038585878
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NEZ8 (UniProtKB/TrEMBL),   A0A8I3P6G0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038441809   ⟸   XM_038585881
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LSB3 (UniProtKB/TrEMBL),   A0A8C0RKE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038441807   ⟸   XM_038585879
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N9Z6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038441808   ⟸   XM_038585880
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NAE2 (UniProtKB/TrEMBL),   A0A8C0R8I5 (UniProtKB/TrEMBL),   A0A8C0SCB8 (UniProtKB/TrEMBL),   A0A8I3PB02 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845025247   ⟸   ENSCAFT00845032295
RefSeq Acc Id: ENSCAFP00845024914   ⟸   ENSCAFT00845031842
RefSeq Acc Id: ENSCAFP00845025155   ⟸   ENSCAFT00845032177
RefSeq Acc Id: ENSCAFP00845025304   ⟸   ENSCAFT00845032373
RefSeq Acc Id: ENSCAFP00845025108   ⟸   ENSCAFT00845032111
RefSeq Acc Id: ENSCAFP00845025333   ⟸   ENSCAFT00845032405
Protein Domains
AP complex mu/sigma subunit   FYVE-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016204 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014739 UniProtKB/TrEMBL
  ENSCAFG00040012046 UniProtKB/TrEMBL
  ENSCAFG00040012070 UniProtKB/TrEMBL
  ENSCAFG00845017987 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000025694.5 UniProtKB/TrEMBL
  ENSCAFT00000025711.5 UniProtKB/TrEMBL
  ENSCAFT00000067000.2 UniProtKB/TrEMBL
  ENSCAFT00000082948.2 UniProtKB/TrEMBL
  ENSCAFT00000105133.1 UniProtKB/TrEMBL
  ENSCAFT00030027186.1 UniProtKB/TrEMBL
  ENSCAFT00030027337.1 UniProtKB/TrEMBL
  ENSCAFT00030027362.1 UniProtKB/TrEMBL
  ENSCAFT00030027466.1 UniProtKB/TrEMBL
  ENSCAFT00030027501.1 UniProtKB/TrEMBL
  ENSCAFT00030027580.1 UniProtKB/TrEMBL
  ENSCAFT00040022243.1 UniProtKB/TrEMBL
  ENSCAFT00040022251.1 UniProtKB/TrEMBL
  ENSCAFT00040022299.1 UniProtKB/TrEMBL
  ENSCAFT00845031842.1 UniProtKB/TrEMBL
  ENSCAFT00845032111.1 UniProtKB/TrEMBL
  ENSCAFT00845032177 ENTREZGENE
  ENSCAFT00845032177.1 UniProtKB/TrEMBL
  ENSCAFT00845032295.1 UniProtKB/TrEMBL
  ENSCAFT00845032373.1 UniProtKB/TrEMBL
  ENSCAFT00845032405 ENTREZGENE
  ENSCAFT00845032405.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  3.30.450.60 UniProtKB/TrEMBL
InterPro AP1_sigma UniProtKB/TrEMBL
  AP_complex_ssu UniProtKB/TrEMBL
  AP_mu_sigma_su UniProtKB/TrEMBL
  Clathrin_sm-chain_CS UniProtKB/TrEMBL
  G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDFY1/WDFY2 UniProtKB/TrEMBL
  WDFY1_FYVE UniProtKB/TrEMBL
  Znf_FYVE UniProtKB/TrEMBL
  Znf_FYVE-rel UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene WDFY1 ENTREZGENE
PANTHER AP-1 COMPLEX SUBUNIT SIGMA-3 UniProtKB/TrEMBL
  PTHR11753 UniProtKB/TrEMBL
  PTHR46189 UniProtKB/TrEMBL
  WD REPEAT AND FYVE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Clat_adaptor_s UniProtKB/TrEMBL
  FYVE UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PIRSF AP_complex_sigma UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE CLAT_ADAPTOR_S UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
  ZF_FYVE UniProtKB/TrEMBL
SMART FYVE UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
  SSF64356 UniProtKB/TrEMBL
UniProt A0A8C0LSB3 ENTREZGENE
  A0A8C0N9Z6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NAE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NAQ5_CANLF UniProtKB/TrEMBL
  A0A8C0NB47_CANLF UniProtKB/TrEMBL
  A0A8C0NEZ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R8I5 ENTREZGENE
  A0A8C0RKE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SCB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NU93_CANLF UniProtKB/TrEMBL
  A0A8I3P244_CANLF UniProtKB/TrEMBL
  A0A8I3P5N3_CANLF UniProtKB/TrEMBL
  A0A8I3P6G0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PB02 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S356_CANLF UniProtKB/TrEMBL
  A0A8P0P3V8_CANLF UniProtKB/TrEMBL
  A0A8P0TJW7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:48345 ENTREZGENE