Pirt (phosphoinositide-interacting regulator of transient receptor potential channels) - Rat Genome Database

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Gene: Pirt (phosphoinositide-interacting regulator of transient receptor potential channels) Mus musculus
Analyze
Symbol: Pirt
Name: phosphoinositide-interacting regulator of transient receptor potential channels
RGD ID: 1619036
MGI Page MGI
Description: Enables phosphatidylinositol bisphosphate binding activity; phosphatidylinositol-3,4,5-trisphosphate binding activity; and transmembrane transporter binding activity. Acts upstream of or within behavioral response to pain; positive regulation of cation channel activity; and response to heat. Located in plasma membrane. Is expressed in gut; nervous system; and olfactory epithelium. Orthologous to human PIRT (phosphoinositide interacting regulator of transient receptor potential channels).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: A530088H08Rik; P; phosphoinositide interacting protein; phosphoinositide-interacting protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,802,731 - 66,820,703 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,802,807 - 66,820,702 (+)EnsemblGRCm39 Ensembl
GRCm381166,911,905 - 66,929,877 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,911,981 - 66,929,876 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,725,493 - 66,742,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,728,186 - 66,744,895 (+)NCBIMGSCv36mm8
Celera1173,851,239 - 73,867,838 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18455988   PMID:18799693   PMID:21267068  
PMID:21655234   PMID:21734270   PMID:21873635   PMID:23863968   PMID:24462040   PMID:26151598   PMID:26216096   PMID:26373451   PMID:26376721   PMID:26521042   PMID:26657057   PMID:27270085  
PMID:27436359   PMID:27568517   PMID:27847865   PMID:28190640   PMID:28426967   PMID:28970527   PMID:29346752   PMID:29403029   PMID:29563338   PMID:29724821   PMID:29808083   PMID:29921657  
PMID:29988128   PMID:30033153   PMID:30755524   PMID:30902502   PMID:31027996   PMID:31171579   PMID:31390574   PMID:31481522   PMID:31591569   PMID:31831729   PMID:31883963   PMID:32060036  
PMID:32352932   PMID:33220232   PMID:33450207   PMID:33819485   PMID:33876765   PMID:34497285   PMID:34752775   PMID:35365503   PMID:35732741   PMID:35892578   PMID:36045288   PMID:36264609  
PMID:36278870   PMID:37033371   PMID:37196079   PMID:37354904   PMID:37541195   PMID:37909038   PMID:37989590   PMID:38190983   PMID:38258905   PMID:38307407   PMID:38471780   PMID:38802819  


Genomics

Comparative Map Data
Pirt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391166,802,731 - 66,820,703 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1166,802,807 - 66,820,702 (+)EnsemblGRCm39 Ensembl
GRCm381166,911,905 - 66,929,877 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,911,981 - 66,929,876 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,725,493 - 66,742,202 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,728,186 - 66,744,895 (+)NCBIMGSCv36mm8
Celera1173,851,239 - 73,867,838 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.59NCBI
PIRT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381710,822,470 - 10,838,087 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1710,822,470 - 10,838,087 (-)EnsemblGRCh38hg38GRCh38
GRCh371710,725,787 - 10,741,404 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361710,666,517 - 10,682,143 (-)NCBINCBI36Build 36hg18NCBI36
Celera1710,756,635 - 10,772,261 (-)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1710,626,293 - 10,641,913 (-)NCBIHuRef
CHM1_11710,735,671 - 10,751,286 (-)NCBICHM1_1
T2T-CHM13v2.01710,730,377 - 10,745,996 (-)NCBIT2T-CHM13v2.0
Pirt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81052,112,235 - 52,127,140 (+)NCBIGRCr8
mRatBN7.21051,613,202 - 51,628,108 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1051,613,126 - 51,632,264 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1056,269,300 - 56,284,142 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01055,759,278 - 55,774,118 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01051,262,121 - 51,276,997 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01053,466,870 - 53,485,096 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1053,466,870 - 53,481,770 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01053,218,153 - 53,236,283 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41053,617,910 - 53,633,542 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1050,795,900 - 50,810,922 (+)NCBICelera
Cytogenetic Map10q24NCBI
Pirt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554676,375,992 - 6,391,764 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554676,375,992 - 6,391,770 (+)NCBIChiLan1.0ChiLan1.0
PIRT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21962,912,650 - 62,928,354 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11767,722,060 - 67,737,858 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01740,815,724 - 40,831,539 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11745,563,171 - 45,578,827 (+)NCBIpanpan1.1PanPan1.1panPan2
PIRT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1535,085,480 - 35,095,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl535,086,173 - 35,086,589 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,221,420 - 35,231,628 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,190,218 - 35,200,470 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl535,189,884 - 35,200,152 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1535,155,599 - 35,165,838 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,112,111 - 35,122,361 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,294,218 - 35,304,417 (-)NCBIUU_Cfam_GSD_1.0
Pirt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,185,168 - 50,203,870 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365953,662,647 - 3,663,054 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365953,659,356 - 3,677,871 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIRT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1255,513,315 - 55,519,578 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11255,513,291 - 55,526,290 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PIRT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11610,164,563 - 10,175,835 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1610,167,342 - 10,167,755 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605911,165,747 - 11,177,810 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pirt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478613,191,776 - 13,204,810 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478613,189,723 - 13,204,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pirt
720 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1434
Count of miRNA genes:651
Interacting mature miRNAs:810
Transcripts:ENSMUST00000123434
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115925661769482699Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
4141642Ltxs2_mlethal factor toxin susceptibility 2 (mouse)Not determined116304211368500330Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000123434   ⟹   ENSMUSP00000128117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1166,802,807 - 66,820,702 (+)Ensembl
GRCm38.p6 Ensembl1166,911,981 - 66,929,876 (+)Ensembl
RefSeq Acc Id: NM_178656   ⟹   NP_848771
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391166,802,817 - 66,819,526 (+)NCBI
GRCm381166,911,991 - 66,928,700 (+)NCBI
MGSCv371166,725,493 - 66,742,202 (+)RGD
Celera1173,851,239 - 73,867,838 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532579   ⟹   XP_006532642
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391166,814,106 - 66,820,703 (+)NCBI
GRCm381166,923,280 - 66,928,122 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248822   ⟹   XP_011247124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391166,802,731 - 66,820,703 (+)NCBI
GRCm381166,911,905 - 66,929,877 (+)NCBI
Sequence:
RefSeq Acc Id: NP_848771   ⟸   NM_178656
- UniProtKB: Q8BFY0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532642   ⟸   XM_006532579
- Peptide Label: isoform X2
- UniProtKB: Q8BFY0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247124   ⟸   XM_011248822
- Peptide Label: isoform X1
- UniProtKB: Q3UFA4 (UniProtKB/TrEMBL),   Q3UEZ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000128117   ⟸   ENSMUST00000123434

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BFY0-F1-model_v2 AlphaFold Q8BFY0 1-135 view protein structure

Promoters
RGD ID:8675052
Promoter ID:EPDNEW_M15557
Type:initiation region
Name:Pirt_1
Description:Mus musculus phosphoinositide-interacting regulator of transientreceptor potential channels , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15558  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381166,911,991 - 66,912,051EPDNEW
RGD ID:8675054
Promoter ID:EPDNEW_M15558
Type:single initiation site
Name:Pirt_2
Description:Mus musculus phosphoinositide-interacting regulator of transientreceptor potential channels , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15557  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381166,916,838 - 66,916,898EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443635 AgrOrtholog
Ensembl Genes ENSMUSG00000048070 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000123434 ENTREZGENE
  ENSMUST00000123434.3 UniProtKB/Swiss-Prot
InterPro PIRT UniProtKB/Swiss-Prot
KEGG Report mmu:193003 UniProtKB/Swiss-Prot
MGD MGI:2443635 ENTREZGENE
NCBI Gene 193003 ENTREZGENE
PANTHER PHOSPHOINOSITIDE-INTERACTING PROTEIN UniProtKB/Swiss-Prot
  PHOSPHOINOSITIDE-INTERACTING PROTEIN FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam PIRT UniProtKB/Swiss-Prot
PhenoGen Pirt PhenoGen
UniProt PIRT_MOUSE UniProtKB/Swiss-Prot
  Q3UEZ1 ENTREZGENE, UniProtKB/TrEMBL
  Q3UFA4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BFY0 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Pirt  phosphoinositide-interacting regulator of transient receptor potential channels  A530088H08Rik  RIKEN cDNA A530088H08 gene  Symbol and/or name change 5135510 APPROVED