Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Catip | Mouse | spermatogenic failure 54 | | ISO | CATIP (Homo sapiens) | 7240710 | | OMIM | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Watched Genes
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Gene-Chemical Interaction Annotations Click to see Annotation Detail View
Gene Ontology Annotations Click to see Annotation Detail View
Biological Process
Cellular Component
Molecular Function
Phenotype Annotations Click to see Annotation Detail View
Mammalian Phenotype
Disease Annotations
Click to see Annotation Detail View
Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
Click to see Annotation Detail View
Cellular Component
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Phenotype Annotations
Click to see Annotation Detail View
References
References - curated
| # | Reference Title | Reference Citation |
| 1. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
| 2. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Additional References at PubMed
| PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12466851 | PMID:12477932 | PMID:16141072 | PMID:16141073 | PMID:21677750 | PMID:21873635 | PMID:27626380 | PMID:30973865 |
| PMID:38355793 |
Genomics
Comparative Map Data
| Catip (Mus musculus - house mouse) |
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| CATIP (Homo sapiens - human) |
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| Catip (Rattus norvegicus - Norway rat) |
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| Catip (Chinchilla lanigera - long-tailed chinchilla) |
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| CATIP (Pan paniscus - bonobo/pygmy chimpanzee) |
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| CATIP (Canis lupus familiaris - dog) |
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| Catip (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| CATIP (Sus scrofa - pig) |
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| CATIP (Chlorocebus sabaeus - green monkey) |
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| Catip (Heterocephalus glaber - naked mole-rat) |
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miRNA Target Status
Predicted Target Of
| The detailed report is available here: |  | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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QTLs in Region (GRCm39)
| The following QTLs overlap with this region. | | Full Report | | CSV | | TAB | | Printer | | Gviewer |
Markers in Region
| RH118242 |
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Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
| RefSeq Transcripts | NM_001379457 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| NR_166731 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011238521 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_011238522 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017320632 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017320639 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AC098570 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AK138157 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC150857 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSMUST00000097697 ⟹ ENSMUSP00000095303 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSMUST00000128445 ⟹ ENSMUSP00000117442 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSMUST00000186688 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSMUST00000191010 ⟹ ENSMUSP00000141181 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSMUST00000240719 ⟹ ENSMUSP00000159512 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001379457 ⟹ NP_001366386 | ||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | NR_166731 | ||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||
| Type: | NON-CODING | ||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_011238521 ⟹ XP_011236823 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_011238522 ⟹ XP_011236824 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_017320632 ⟹ XP_017176121 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_017320639 ⟹ XP_017176128 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
Protein Sequences
| Protein RefSeqs | NP_001366386 | (Get FASTA) | NCBI Sequence Viewer |
| XP_011236823 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_011236824 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017176121 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017176128 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAI50858 | (Get FASTA) | NCBI Sequence Viewer |
| B9EKE5 | (Get FASTA) | NCBI Sequence Viewer | |
| BAE23563 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSMUSP00000095303.3 | ||
| ENSMUSP00000117442 | |||
| ENSMUSP00000117442.3 | |||
| ENSMUSP00000159512.1 |
| RefSeq Acc Id: | XP_011236823 ⟸ XM_011238521 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A8V5KY96 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_011236824 ⟸ XM_011238522 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
| RefSeq Acc Id: | XP_017176121 ⟸ XM_017320632 |
| - Peptide Label: | isoform X2 |
| - UniProtKB: | Q3UUR2 (UniProtKB/Swiss-Prot), B9EKE5 (UniProtKB/Swiss-Prot), A0A8V5KY96 (UniProtKB/TrEMBL) |
| - Sequence: |
| RefSeq Acc Id: | XP_017176128 ⟸ XM_017320639 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
| RefSeq Acc Id: | NP_001366386 ⟸ NM_001379457 |
| - UniProtKB: | F7AAT1 (UniProtKB/TrEMBL), A0A8V5KY96 (UniProtKB/TrEMBL) |
| Ensembl Acc Id: | ENSMUSP00000141181 ⟸ ENSMUST00000191010 |
| Ensembl Acc Id: | ENSMUSP00000117442 ⟸ ENSMUST00000128445 |
| Ensembl Acc Id: | ENSMUSP00000095303 ⟸ ENSMUST00000097697 |
| Ensembl Acc Id: | ENSMUSP00000159512 ⟸ ENSMUST00000240719 |
Protein Structures
| Name | Modeler | Protein Id | AA Range | Protein Structure |
| AF-B9EKE5-F1-model_v2 | AlphaFold | B9EKE5 | 1-520 | view protein structure |
Promoters
| RGD ID: | 6874080 | ||||||||
| Promoter ID: | EPDNEW_M483 | ||||||||
| Type: | multiple initiation site | ||||||||
| Name: | Catip_1 | ||||||||
| Description: | Mus musculus ciliogenesis associated TTC17 interacting protein, mRNA. | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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| RGD ID: | 6817182 | ||||||||
| Promoter ID: | MM_KWN:1163 | ||||||||
| Type: | Non-CpG | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | MPROMDB | ||||||||
| Tissues & Cell Lines: | MEF_B6 | ||||||||
| Transcripts: | NM_001033345, OTTMUST00000066049 | ||||||||
| Position: |
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Additional Information
External Database Links
| Database | Acc Id | Source(s) |
| AGR Gene | MGI:2685062 | AgrOrtholog |
| Ensembl Genes | ENSMUSG00000073650 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSMUST00000097697 | ENTREZGENE |
| ENSMUST00000097697.8 | UniProtKB/TrEMBL | |
| ENSMUST00000128445 | ENTREZGENE | |
| ENSMUST00000128445.9 | UniProtKB/TrEMBL | |
| ENSMUST00000191010 | ENTREZGENE | |
| ENSMUST00000240719.1 | UniProtKB/TrEMBL | |
| InterPro | CATIP_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| MGD | MGI:2685062 | ENTREZGENE |
| NCBI Gene | 241112 | ENTREZGENE |
| PANTHER | CILIOGENESIS-ASSOCIATED TTC17-INTERACTING PROTEIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| RIIA DOMAIN-CONTAINING PROTEIN 1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| Pfam | CATIP_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| PhenoGen | Catip | PhenoGen |
| UniProt | A0A8V5KY96 | ENTREZGENE, UniProtKB/TrEMBL |
| A0A8Z1S196_MOUSE | UniProtKB/TrEMBL | |
| B9EKE5 | ENTREZGENE, UniProtKB/Swiss-Prot | |
| F7AAT1 | ENTREZGENE, UniProtKB/TrEMBL | |
| Q3UUR2 | ENTREZGENE | |
| UniProt Secondary | Q3UUR2 | UniProtKB/Swiss-Prot |
Nomenclature History
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2014-03-26 | Catip | ciliogenesis associated TTC17 interacting protein | Gm216 | predicted gene 216 | Symbol and/or name change | 5135510 | APPROVED |