Pate12 (prostate and testis expressed 12) - Rat Genome Database

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Gene: Pate12 (prostate and testis expressed 12) Mus musculus
Analyze
No known orthologs.
Symbol: Pate12
Name: prostate and testis expressed 12
RGD ID: 1617801
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EG639025; Gm7257; Pate-q; predicted gene 7257; prostate and testis expressed Q
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39936,343,125 - 36,346,234 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl936,343,180 - 36,346,234 (+)EnsemblGRCm39 Ensembl
GRCm38936,431,829 - 36,434,938 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl936,431,884 - 36,434,938 (+)EnsemblGRCm38mm10GRCm38
MGSCv37936,239,469 - 36,242,523 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36936,181,555 - 36,184,609 (+)NCBIMGSCv36mm8
Celera933,644,103 - 33,647,157 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:18387948   PMID:27098205  


Genomics

Variants

.
Variants in Pate12
80 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:62
Interacting mature miRNAs:62
Transcripts:ENSMUST00000041537
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
1300868Tlf_mT lymphocyte fraction (mouse)Not determined93483774837306370Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92850333341799326Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1558949Igan3_mIgA nephropathy 3 (mouse)Not determined93041469440565914Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
4142455Elnv_mepilepsy naive (mouse)Not determined93127155837306370Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001167586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000041537   ⟹   ENSMUSP00000048154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl936,343,180 - 36,346,234 (+)Ensembl
GRCm38.p6 Ensembl936,431,884 - 36,434,938 (+)Ensembl
RefSeq Acc Id: NM_001167586   ⟹   NP_001161058
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39936,343,125 - 36,346,234 (+)NCBI
GRCm38936,431,829 - 36,434,938 (+)NCBI
MGSCv37936,239,469 - 36,242,523 (+)RGD
Celera933,644,103 - 33,647,157 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001161058 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000048154
  ENSMUSP00000048154.7
RefSeq Acc Id: NP_001161058   ⟸   NM_001167586
- Peptide Label: precursor
- UniProtKB: D3YX25 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000048154   ⟸   ENSMUST00000041537

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3YX25-F1-model_v2 AlphaFold D3YX25 1-99 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3647831 AgrOrtholog
Ensembl Genes ENSMUSG00000023093 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000041537 ENTREZGENE
  ENSMUST00000041537.7 UniProtKB/TrEMBL
KEGG Report mmu:639025 UniProtKB/TrEMBL
MGD MGI:3647831 ENTREZGENE
NCBI Gene 639025 ENTREZGENE
PhenoGen Pate12 PhenoGen
UniProt D3YX25 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-03-05 Pate12  prostate and testis expressed 12  Gm7257  predicted gene 7257  Symbol and/or name change 5135510 APPROVED