Arhgap25 (Rho GTPase activating protein 25) - Rat Genome Database

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Gene: Arhgap25 (Rho GTPase activating protein 25) Mus musculus
Analyze
Symbol: Arhgap25
Name: Rho GTPase activating protein 25
RGD ID: 1617350
MGI Page MGI
Description: Predicted to enable GTPase activator activity. Predicted to be involved in actin filament organization; negative regulation of small GTPase mediated signal transduction; and phagocytosis, engulfment. Predicted to be active in phagocytic cup. Is expressed in brain; cerebral cortex ventricular layer; pharyngo-tympanic tube; and vibrissa. Orthologous to human ARHGAP25 (Rho GTPase activating protein 25).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A130039I20Rik; rho GTPase-activating protein 25; rho-type GTPase-activating protein 25
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,435,526 - 87,510,241 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,435,527 - 87,510,241 (-)EnsemblGRCm39 Ensembl
GRCm38687,458,544 - 87,533,261 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,458,545 - 87,533,259 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,409,379 - 87,483,229 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,425,026 - 87,498,876 (-)NCBIMGSCv36mm8
Celera689,392,340 - 89,468,487 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map638.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
phagocytic cup  (IBA,ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15254788   PMID:15368895   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24952961   PMID:27365422   PMID:27566826   PMID:30973865   PMID:32325033   PMID:32434881   PMID:32554809   PMID:34321999  
PMID:37234175   PMID:38355793  


Genomics

Comparative Map Data
Arhgap25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,435,526 - 87,510,241 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,435,527 - 87,510,241 (-)EnsemblGRCm39 Ensembl
GRCm38687,458,544 - 87,533,261 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,458,545 - 87,533,259 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,409,379 - 87,483,229 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,425,026 - 87,498,876 (-)NCBIMGSCv36mm8
Celera689,392,340 - 89,468,487 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map638.01NCBI
ARHGAP25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38268,710,544 - 68,826,833 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl268,679,601 - 68,826,833 (+)EnsemblGRCh38hg38GRCh38
GRCh37268,961,943 - 69,053,965 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36268,815,472 - 68,907,469 (+)NCBINCBI36Build 36hg18NCBI36
Build 34268,913,583 - 68,965,606NCBI
Celera268,812,361 - 68,904,457 (+)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef268,698,170 - 68,790,208 (+)NCBIHuRef
CHM1_1268,891,239 - 68,983,315 (+)NCBICHM1_1
T2T-CHM13v2.0268,722,999 - 68,839,279 (+)NCBIT2T-CHM13v2.0
Arhgap25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,454,151 - 121,532,293 (-)NCBIGRCr8
mRatBN7.24119,896,844 - 119,974,982 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,896,844 - 119,974,982 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,368,652 - 125,448,563 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,143,426 - 121,223,345 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04119,767,660 - 119,847,573 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,249,682 - 119,327,822 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,249,682 - 119,327,822 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,812,925 - 183,891,522 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,620,926 - 121,700,835 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4108,865,660 - 108,943,601 (-)NCBICelera
Cytogenetic Map4q34NCBI
Arhgap25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542416,164,324 - 16,241,481 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542416,166,285 - 16,241,481 (-)NCBIChiLan1.0ChiLan1.0
ARHGAP25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21257,588,822 - 57,681,052 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A57,592,770 - 57,685,000 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A68,775,637 - 68,867,870 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A69,897,974 - 69,989,955 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A69,897,974 - 69,989,955 (+)Ensemblpanpan1.1panPan2
ARHGAP25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11067,597,527 - 67,687,721 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1067,487,709 - 67,576,482 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01068,619,760 - 68,709,809 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1068,619,811 - 68,709,807 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11068,302,032 - 68,391,920 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01068,601,892 - 68,692,023 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01068,895,976 - 68,988,211 (+)NCBIUU_Cfam_GSD_1.0
Arhgap25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629215,433,090 - 15,515,494 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649113,055,790 - 13,138,227 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649113,055,790 - 13,138,370 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGAP25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl373,556,565 - 73,649,849 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1373,556,561 - 73,649,997 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2377,002,872 - 77,096,317 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGAP25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11438,297,738 - 38,389,692 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1438,297,213 - 38,389,777 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604573,601,639 - 73,692,238 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgap25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247624,523,920 - 4,596,253 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247624,520,420 - 4,596,276 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:584
Count of miRNA genes:227
Interacting mature miRNAs:259
Transcripts:ENSMUST00000071024, ENSMUST00000101197, ENSMUST00000113637, ENSMUST00000145128
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67707698389976982Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67797698396976961Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67552133992584431Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67552133994202936Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67129960593441074Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675424566104480516Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675584287109584431Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686783787113521563Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676440930110441074Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675693484109693678Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681476981102176961Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67552133994202936Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse

Markers in Region
D6Mit213  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,531,870 - 87,532,013UniSTSGRCm38
MGSCv37687,481,864 - 87,482,007UniSTSGRCm37
Celera689,467,146 - 89,467,263UniSTS
Cytogenetic Map6D1UniSTS
cM Map637.0UniSTS
Whitehead Genetic629.5UniSTS
Whitehead_YAC6 UniSTS
PCBP1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,512,845 - 87,512,966UniSTSGRCm38
GRCm38686,524,562 - 86,524,684UniSTSGRCm38
MGSCv37687,462,839 - 87,462,960UniSTSGRCm37
MGSCv37686,474,556 - 86,474,678UniSTSGRCm37
Celera688,462,524 - 88,462,646UniSTS
Celera689,448,029 - 89,448,150UniSTS
Cytogenetic Map6D1UniSTS
A006T05  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38687,513,135 - 87,513,294UniSTSGRCm38
GRCm38686,525,032 - 86,525,191UniSTSGRCm38
MGSCv37687,463,129 - 87,463,288UniSTSGRCm37
MGSCv37686,475,026 - 86,475,185UniSTSGRCm37
Celera688,462,994 - 88,463,153UniSTS
Celera689,448,319 - 89,448,478UniSTS
Cytogenetic Map6D1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_104483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY232430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ145934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000071024   ⟹   ENSMUSP00000068964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,436,387 - 87,510,241 (-)Ensembl
GRCm38.p6 Ensembl687,459,405 - 87,533,259 (-)Ensembl
Ensembl Acc Id: ENSMUST00000101197   ⟹   ENSMUSP00000098758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,436,387 - 87,473,296 (-)Ensembl
GRCm38.p6 Ensembl687,459,405 - 87,496,314 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113637   ⟹   ENSMUSP00000109267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,435,527 - 87,510,217 (-)Ensembl
GRCm38.p6 Ensembl687,458,545 - 87,533,235 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,435,527 - 87,473,296 (-)Ensembl
GRCm38.p6 Ensembl687,458,545 - 87,496,314 (-)Ensembl
Ensembl Acc Id: ENSMUST00000203559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl687,437,097 - 87,440,629 (-)Ensembl
GRCm38.p6 Ensembl687,460,115 - 87,463,647 (-)Ensembl
RefSeq Acc Id: NM_001037727   ⟹   NP_001032816
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,435,527 - 87,510,241 (-)NCBI
GRCm38687,458,545 - 87,533,259 (-)NCBI
MGSCv37687,409,379 - 87,483,229 (-)RGD
Celera689,391,480 - 89,468,511 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286610   ⟹   NP_001273539
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,435,527 - 87,510,241 (-)NCBI
GRCm38687,458,545 - 87,533,259 (-)NCBI
Celera689,391,480 - 89,468,511 (-)NCBI
Sequence:
RefSeq Acc Id: NM_175476   ⟹   NP_780685
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,435,527 - 87,473,309 (-)NCBI
GRCm38687,458,545 - 87,496,327 (-)NCBI
MGSCv37687,409,379 - 87,483,229 (-)RGD
Celera689,391,480 - 89,468,511 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_104483
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,435,527 - 87,473,309 (-)NCBI
GRCm38687,458,545 - 87,496,327 (-)NCBI
Celera689,391,480 - 89,468,511 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505980   ⟹   XP_006506043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,436,366 - 87,460,485 (-)NCBI
GRCm38687,458,544 - 87,484,475 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321531   ⟹   XP_017177020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,436,366 - 87,510,236 (-)NCBI
GRCm38687,458,544 - 87,533,261 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166049   ⟹   XP_036021942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,435,526 - 87,473,346 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001032816   ⟸   NM_001037727
- Peptide Label: isoform a
- UniProtKB: Q6A0E0 (UniProtKB/Swiss-Prot),   Q3UVB7 (UniProtKB/Swiss-Prot),   Q3TVX0 (UniProtKB/Swiss-Prot),   Q3TE04 (UniProtKB/Swiss-Prot),   Q2VPR2 (UniProtKB/Swiss-Prot),   B2RS69 (UniProtKB/Swiss-Prot),   Q8BX98 (UniProtKB/Swiss-Prot),   Q8BYW1 (UniProtKB/Swiss-Prot),   B9EI26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_780685   ⟸   NM_175476
- Peptide Label: isoform b
- UniProtKB: B9EI26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273539   ⟸   NM_001286610
- Peptide Label: isoform c
- UniProtKB: B9EI26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506043   ⟸   XM_006505980
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017177020   ⟸   XM_017321531
- Peptide Label: isoform X1
- UniProtKB: B9EI26 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000068964   ⟸   ENSMUST00000071024
Ensembl Acc Id: ENSMUSP00000109267   ⟸   ENSMUST00000113637
Ensembl Acc Id: ENSMUSP00000098758   ⟸   ENSMUST00000101197
RefSeq Acc Id: XP_036021942   ⟸   XM_036166049
- Peptide Label: isoform X2
Protein Domains
PH   Rho-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BYW1-F1-model_v2 AlphaFold Q8BYW1 1-648 view protein structure

Promoters
RGD ID:6838946
Promoter ID:MM_KWN:46771
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Lung,   Spleen
Transcripts:OTTMUST00000055537,   OTTMUST00000055538
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,446,271 - 87,447,157 (-)MPROMDB
RGD ID:6838941
Promoter ID:MM_KWN:46772
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   Spleen
Transcripts:ENSMUST00000113637,   UC009CTN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,482,851 - 87,484,032 (-)MPROMDB
RGD ID:6890330
Promoter ID:EPDNEW_M8616
Type:initiation region
Name:Arhgap25_2
Description:Mus musculus Rho GTPase activating protein 25 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8617  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,532,991 - 87,533,051EPDNEW
RGD ID:6890332
Promoter ID:EPDNEW_M8617
Type:initiation region
Name:Arhgap25_1
Description:Mus musculus Rho GTPase activating protein 25 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8616  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,533,235 - 87,533,295EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443687 AgrOrtholog
Ensembl Genes ENSMUSG00000030047 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000071024 ENTREZGENE
  ENSMUST00000071024.7 UniProtKB/Swiss-Prot
  ENSMUST00000101197 ENTREZGENE
  ENSMUST00000101197.9 UniProtKB/Swiss-Prot
  ENSMUST00000113637 ENTREZGENE
  ENSMUST00000113637.9 UniProtKB/Swiss-Prot
  ENSMUST00000145128 ENTREZGENE
Gene3D-CATH 1.10.555.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:232201 UniProtKB/Swiss-Prot
MGD MGI:2443687 ENTREZGENE
NCBI Gene 232201 ENTREZGENE
PANTHER RHO GTPASE-ACTIVATING PROTEIN 25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERMATHECAL PHYSIOLOGY VARIANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arhgap25 PhenoGen
PROSITE PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHOGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RS69 ENTREZGENE
  B9EI26 ENTREZGENE, UniProtKB/TrEMBL
  Q2VPR2 ENTREZGENE
  Q3TE04 ENTREZGENE
  Q3TVX0 ENTREZGENE
  Q3UVB7 ENTREZGENE
  Q6A0E0 ENTREZGENE
  Q8BX98 ENTREZGENE
  Q8BYW1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B2RS69 UniProtKB/Swiss-Prot
  Q2VPR2 UniProtKB/Swiss-Prot
  Q3TE04 UniProtKB/Swiss-Prot
  Q3TVX0 UniProtKB/Swiss-Prot
  Q3UVB7 UniProtKB/Swiss-Prot
  Q6A0E0 UniProtKB/Swiss-Prot
  Q8BX98 UniProtKB/Swiss-Prot