Slc15a5 (solute carrier family 15, member 5) - Rat Genome Database

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Gene: Slc15a5 (solute carrier family 15, member 5) Mus musculus
Analyze
Symbol: Slc15a5
Name: solute carrier family 15, member 5
RGD ID: 1616457
MGI Page MGI
Description: Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to act upstream of or within peptide transport and protein transport. Predicted to be active in membrane. Orthologous to human SLC15A5 (solute carrier family 15 member 5).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 9830102E05Rik; solute carrier family 15 member 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396137,960,584 - 138,056,914 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6137,960,584 - 138,056,914 (-)EnsemblGRCm39 Ensembl
GRCm386137,983,586 - 138,079,916 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6137,983,586 - 138,079,916 (-)EnsemblGRCm38mm10GRCm38
MGSCv376137,932,111 - 138,028,437 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366137,947,786 - 138,037,394 (-)NCBIMGSCv36mm8
Celera6141,048,720 - 141,143,799 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map667.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23375831  


Genomics

Comparative Map Data
Slc15a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396137,960,584 - 138,056,914 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6137,960,584 - 138,056,914 (-)EnsemblGRCm39 Ensembl
GRCm386137,983,586 - 138,079,916 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6137,983,586 - 138,079,916 (-)EnsemblGRCm38mm10GRCm38
MGSCv376137,932,111 - 138,028,437 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366137,947,786 - 138,037,394 (-)NCBIMGSCv36mm8
Celera6141,048,720 - 141,143,799 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map667.96NCBI
SLC15A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381216,188,485 - 16,277,685 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1216,188,485 - 16,277,685 (-)EnsemblGRCh38hg38GRCh38
GRCh371216,341,419 - 16,430,619 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361216,233,869 - 16,321,886 (-)NCBINCBI36Build 36hg18NCBI36
Celera1221,486,383 - 21,574,381 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1216,110,761 - 16,198,741 (-)NCBIHuRef
CHM1_11216,307,411 - 16,395,372 (-)NCBICHM1_1
T2T-CHM13v2.01216,065,864 - 16,155,028 (-)NCBIT2T-CHM13v2.0
Slc15a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84172,609,293 - 172,702,893 (-)NCBIGRCr8
mRatBN7.24170,878,021 - 170,971,620 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4170,878,021 - 170,971,620 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4177,173,067 - 177,266,669 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04172,957,259 - 173,050,845 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04171,577,779 - 171,671,367 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04171,970,620 - 172,063,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4171,970,620 - 172,063,391 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04236,224,617 - 236,317,092 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44175,098,364 - 175,191,369 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4159,452,735 - 159,545,830 (-)NCBICelera
Cytogenetic Map4q44NCBI
Slc15a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541312,832,193 - 12,924,836 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541312,832,193 - 12,924,836 (-)NCBIChiLan1.0ChiLan1.0
SLC15A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21021,635,901 - 21,723,724 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11221,632,662 - 21,720,485 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01216,190,038 - 16,277,911 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11216,586,139 - 16,674,013 (-)NCBIpanpan1.1PanPan1.1panPan2
SLC15A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12730,452,346 - 30,534,393 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2730,414,299 - 30,534,100 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2715,913,616 - 15,995,287 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02730,772,519 - 30,854,218 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2730,772,513 - 30,853,930 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12730,719,403 - 30,744,564 (+)NCBIUMICH_Zoey_3.1
UMICH_Zoey_3.12730,623,335 - 30,690,490 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02730,619,522 - 30,701,397 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02715,633,835 - 15,715,524 (-)NCBIUU_Cfam_GSD_1.0
Slc15a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494591,621,762 - 91,704,767 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365871,349,397 - 1,432,155 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365871,349,397 - 1,432,155 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC15A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl556,345,871 - 56,429,368 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1556,345,871 - 56,430,645 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2559,635,863 - 59,718,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC15A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11116,103,843 - 16,198,937 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1116,106,887 - 16,197,599 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606919,095,894 - 19,193,747 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc15a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475221,798,306 - 21,887,888 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475221,798,306 - 21,887,928 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc15a5
3540 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:791
Count of miRNA genes:362
Interacting mature miRNAs:441
Transcripts:ENSMUST00000050132, ENSMUST00000111873, ENSMUST00000141280, ENSMUST00000150278, ENSMUST00000154461, ENSMUST00000171804
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse
10449436Pas17_mpulmonary adenoma susceptibility 17 (mouse)6124334273145601739Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
12879916Shm5_msperm head morphology 5 (mouse)6132266532145601739Mouse
1301820Mop1_mmorphine preference 1 (mouse)Not determined6132578005146330736Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000050132
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6137,960,588 - 138,050,194 (-)Ensembl
GRCm38.p6 Ensembl6137,983,590 - 138,073,196 (-)Ensembl
RefSeq Acc Id: ENSMUST00000111873   ⟹   ENSMUSP00000107504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6137,960,584 - 138,020,409 (-)Ensembl
GRCm38.p6 Ensembl6137,983,586 - 138,043,411 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141280   ⟹   ENSMUSP00000145169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,010,280 - 138,020,479 (-)Ensembl
GRCm38.p6 Ensembl6138,033,282 - 138,043,481 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150278   ⟹   ENSMUSP00000145205
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6137,994,383 - 138,013,901 (-)Ensembl
GRCm38.p6 Ensembl6138,017,385 - 138,036,903 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6138,014,075 - 138,032,845 (-)Ensembl
GRCm38.p6 Ensembl6138,037,077 - 138,055,847 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171804   ⟹   ENSMUSP00000129239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6137,960,588 - 138,056,914 (-)Ensembl
GRCm38.p6 Ensembl6137,983,590 - 138,079,916 (-)Ensembl
RefSeq Acc Id: NM_177787   ⟹   NP_808455
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396137,960,588 - 138,056,914 (-)NCBI
GRCm386137,983,590 - 138,079,916 (-)NCBI
MGSCv376137,932,111 - 138,028,437 (-)RGD
Celera6141,048,720 - 141,143,799 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017321607   ⟹   XP_017177096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396137,960,584 - 138,050,193 (-)NCBI
GRCm386137,983,586 - 138,073,202 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017321608   ⟹   XP_017177097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396137,994,383 - 138,050,189 (-)NCBI
GRCm386138,017,385 - 138,073,200 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_808455   ⟸   NM_177787
- UniProtKB: B2RUQ4 (UniProtKB/Swiss-Prot),   Q8CBB2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017177096   ⟸   XM_017321607
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017177097   ⟸   XM_017321608
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000145205   ⟸   ENSMUST00000150278
RefSeq Acc Id: ENSMUSP00000107504   ⟸   ENSMUST00000111873
RefSeq Acc Id: ENSMUSP00000129239   ⟸   ENSMUST00000171804
RefSeq Acc Id: ENSMUSP00000145169   ⟸   ENSMUST00000141280

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CBB2-F1-model_v2 AlphaFold Q8CBB2 1-566 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3607714 AgrOrtholog
Ensembl Genes ENSMUSG00000044378 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000050132 ENTREZGENE
  ENSMUST00000111873.8 UniProtKB/TrEMBL
  ENSMUST00000141280.3 UniProtKB/TrEMBL
  ENSMUST00000150278.3 UniProtKB/TrEMBL
  ENSMUST00000171804 ENTREZGENE
  ENSMUST00000171804.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POT_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:277898 UniProtKB/Swiss-Prot
MGD MGI:3607714 ENTREZGENE
NCBI Gene 277898 ENTREZGENE
PANTHER PTHR11654 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 15 MEMBER 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PTR2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc15a5 PhenoGen
UniProt A0A0N4SVM7_MOUSE UniProtKB/TrEMBL
  A0A0N4SVQ7_MOUSE UniProtKB/TrEMBL
  B2RUQ4 ENTREZGENE
  D3Z234_MOUSE UniProtKB/TrEMBL
  Q8CBB2 ENTREZGENE
  Q8R300_MOUSE UniProtKB/TrEMBL
  S15A5_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B2RUQ4 UniProtKB/Swiss-Prot