Spmip10 (sperm microtubule inner protein 10) - Rat Genome Database

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Gene: Spmip10 (sperm microtubule inner protein 10) Mus musculus
Analyze
Symbol: Spmip10
Name: sperm microtubule inner protein 10
RGD ID: 1615890
MGI Page MGI
Description: Involved in flagellated sperm motility. Is active in axonemal B tubule inner sheath and sperm flagellum. Orthologous to human SPMIP10 (sperm microtubule inner protein 10).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1700065I17Rik; hypothetical protein LOC67343; sperm-associated microtubule inner protein 10; testis expressed 43; testis specific expressed protein 7; testis-expressed protein 43; Tex43; Tseg7; uncharacterized protein C5orf48 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391856,720,690 - 56,727,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1856,721,422 - 56,727,854 (+)EnsemblGRCm39 Ensembl
GRCm381856,587,609 - 56,594,783 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1856,588,350 - 56,594,782 (+)EnsemblGRCm38mm10GRCm38
MGSCv371856,748,002 - 56,754,433 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361856,713,717 - 56,720,148 (+)NCBIMGSCv36mm8
Celera1857,893,358 - 57,899,784 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1830.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21677750   PMID:21873635   PMID:34446558   PMID:37295417  
PMID:37989994  


Genomics

Comparative Map Data
Spmip10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391856,720,690 - 56,727,855 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1856,721,422 - 56,727,854 (+)EnsemblGRCm39 Ensembl
GRCm381856,587,609 - 56,594,783 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1856,588,350 - 56,594,782 (+)EnsemblGRCm38mm10GRCm38
MGSCv371856,748,002 - 56,754,433 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361856,713,717 - 56,720,148 (+)NCBIMGSCv36mm8
Celera1857,893,358 - 57,899,784 (+)NCBICelera
Cytogenetic Map18D3NCBI
cM Map1830.66NCBI
SPMIP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385126,631,705 - 126,636,284 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5126,631,705 - 126,636,284 (+)EnsemblGRCh38hg38GRCh38
GRCh375125,967,397 - 125,971,976 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365125,995,313 - 125,999,873 (+)NCBINCBI36Build 36hg18NCBI36
Celera5121,924,031 - 121,928,585 (+)NCBICelera
Cytogenetic Map5q23.2NCBI
HuRef5121,158,855 - 121,163,415 (+)NCBIHuRef
CHM1_15125,400,032 - 125,404,579 (+)NCBICHM1_1
T2T-CHM13v2.05127,148,570 - 127,153,149 (+)NCBIT2T-CHM13v2.0
Spmip10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81852,268,703 - 52,272,037 (+)NCBIGRCr8
mRatBN7.21850,070,610 - 50,073,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1850,070,610 - 50,073,942 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1852,108,961 - 52,112,318 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01852,817,020 - 52,820,346 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01850,614,833 - 50,618,186 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01851,679,768 - 51,683,102 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1851,679,768 - 51,683,102 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01850,874,777 - 50,878,111 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41852,362,305 - 52,365,639 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1848,215,759 - 48,219,093 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Spmip10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555214,444,968 - 4,448,791 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555214,444,948 - 4,448,702 (+)NCBIChiLan1.0ChiLan1.0
SPMIP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24121,943,844 - 121,951,943 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15120,083,407 - 120,091,504 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05122,036,540 - 122,041,382 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15127,808,143 - 127,812,790 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5127,808,143 - 127,812,790 (+)Ensemblpanpan1.1panPan2
SPMIP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11115,903,585 - 15,908,557 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1115,902,682 - 15,908,557 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1114,696,644 - 14,701,614 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01116,629,162 - 16,634,137 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1116,629,161 - 16,634,137 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11115,360,445 - 15,365,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01115,206,601 - 15,211,578 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,802,951 - 15,807,926 (+)NCBIUU_Cfam_GSD_1.0
Spmip10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213138,442,759 - 138,449,082 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650416,757 - 22,923 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650416,757 - 22,923 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPMIP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2129,726,961 - 129,731,452 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12129,726,789 - 129,731,851 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22135,025,489 - 135,029,885 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPMIP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12329,623,875 - 29,629,039 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2329,624,270 - 29,628,993 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603448,446,824 - 48,451,787 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spmip10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477414,999,884 - 15,004,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spmip10
258 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:413
Count of miRNA genes:280
Interacting mature miRNAs:301
Transcripts:ENSMUST00000035640, ENSMUST00000127591, ENSMUST00000147775, ENSMUST00000153248
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412184Sstapa1_mSuseptibility to Staphylococus aureus infection 1 (mouse)Not determined184654154657590708Mouse
4141431Msmr2_mMSM lymphoma resistance 2 (mouse)Not determined5497587361238870Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
27226720Tibw5_mtibia width 5, proximal, 10 week (mouse)185043306762633071Mouse

Markers in Region
RH136254  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381856,586,982 - 56,587,164UniSTSGRCm38
MGSCv371856,746,636 - 56,746,818UniSTSGRCm37
Celera1857,891,993 - 57,892,175UniSTS
Cytogenetic Map18D2UniSTS
Cytogenetic Map18D3UniSTS
cM Map1829.0UniSTS
RH136502  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381856,587,231 - 56,587,411UniSTSGRCm38
MGSCv371856,746,885 - 56,747,065UniSTSGRCm37
Celera1857,892,242 - 57,892,422UniSTS
Cytogenetic Map18D2UniSTS
Cytogenetic Map18D3UniSTS
cM Map1829.0UniSTS
RH126229  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381856,587,214 - 56,587,460UniSTSGRCm38
MGSCv371856,746,868 - 56,747,114UniSTSGRCm37
Celera1857,892,225 - 57,892,471UniSTS
Cytogenetic Map18D3UniSTS
Cytogenetic Map18D2UniSTS
cM Map1829.0UniSTS
Whitehead/MRC_RH18760.2UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000035640   ⟹   ENSMUSP00000038152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1856,721,422 - 56,727,854 (+)Ensembl
GRCm38.p6 Ensembl1856,588,350 - 56,594,782 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127591   ⟹   ENSMUSP00000117284
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1856,721,451 - 56,725,786 (+)Ensembl
GRCm38.p6 Ensembl1856,588,379 - 56,592,714 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147775   ⟹   ENSMUSP00000115084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1856,721,498 - 56,727,854 (+)Ensembl
GRCm38.p6 Ensembl1856,588,426 - 56,594,782 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153248   ⟹   ENSMUSP00000116691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1856,721,461 - 56,727,784 (+)Ensembl
GRCm38.p6 Ensembl1856,588,389 - 56,594,712 (+)Ensembl
Ensembl Acc Id: ENSMUST00000235602
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1856,723,814 - 56,727,853 (+)Ensembl
GRCm38.p6 Ensembl1856,590,742 - 56,594,781 (+)Ensembl
RefSeq Acc Id: NM_026099   ⟹   NP_080375
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391856,721,420 - 56,727,851 (+)NCBI
GRCm381856,588,348 - 56,594,779 (+)NCBI
MGSCv371856,748,002 - 56,754,433 (+)RGD
Celera1857,893,358 - 57,899,784 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006526175   ⟹   XP_006526238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391856,720,690 - 56,727,855 (+)NCBI
GRCm381856,587,609 - 56,594,783 (+)NCBI
Sequence:
RefSeq Acc Id: NP_080375   ⟸   NM_026099
- UniProtKB: Q9D9I1 (UniProtKB/Swiss-Prot),   C9W8M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006526238   ⟸   XM_006526175
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000115084   ⟸   ENSMUST00000147775
Ensembl Acc Id: ENSMUSP00000117284   ⟸   ENSMUST00000127591
Ensembl Acc Id: ENSMUSP00000038152   ⟸   ENSMUST00000035640
Ensembl Acc Id: ENSMUSP00000116691   ⟸   ENSMUST00000153248

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D9I1-F1-model_v2 AlphaFold Q9D9I1 1-141 view protein structure

Promoters
RGD ID:13677834
Promoter ID:EPDNEW_M23066
Type:multiple initiation site
Name:Tex43_1
Description:Mus musculus testis expressed 43 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381856,588,351 - 56,588,411EPDNEW
RGD ID:6828961
Promoter ID:MM_KWN:25335
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000069894,   OTTMUST00000069895,   OTTMUST00000069896,   UC008EYS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361856,747,709 - 56,748,209 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914593 AgrOrtholog
Ensembl Genes ENSMUSG00000032900 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035640 ENTREZGENE
  ENSMUST00000035640.13 UniProtKB/Swiss-Prot
  ENSMUST00000127591.2 UniProtKB/TrEMBL
  ENSMUST00000147775 ENTREZGENE
  ENSMUST00000147775.2 UniProtKB/TrEMBL
  ENSMUST00000153248.2 UniProtKB/TrEMBL
InterPro DUF4513 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67343 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914593 ENTREZGENE
NCBI Gene 67343 ENTREZGENE
PANTHER PTHR35247 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 43 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4513 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spmip10 PhenoGen
UniProt C9W8M4 ENTREZGENE, UniProtKB/TrEMBL
  F6VMD1_MOUSE UniProtKB/TrEMBL
  F6YCE8_MOUSE UniProtKB/TrEMBL
  F7C987_MOUSE UniProtKB/TrEMBL
  Q9D2S0_MOUSE UniProtKB/TrEMBL
  Q9D9I1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-05 Spmip10  sperm microtubule inner protein 10  Tex43  testis expressed 43  Symbol and/or name updated 27372883 PROVISIONAL
2014-04-22 Tex43  testis expressed 43  1700065I17Rik  RIKEN cDNA 1700065I17 gene  Symbol and/or name change 5135510 APPROVED