Or5d38 (olfactory receptor family 5 subfamily D member 38) - Rat Genome Database

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Gene: Or5d38 (olfactory receptor family 5 subfamily D member 38) Mus musculus
Analyze
No known orthologs.
Symbol: Or5d38
Name: olfactory receptor family 5 subfamily D member 38
RGD ID: 1614108
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2Q125-49616865-49615915; MOR174; MOR174-6; olfactory receptor 1166; olfactory receptor MOR174-6; Olfr1166
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39287,953,704 - 87,955,337 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl287,953,704 - 87,958,616 (-)EnsemblGRCm39 Ensembl
GRCm38288,123,360 - 88,124,993 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl288,123,360 - 88,128,272 (-)EnsemblGRCm38mm10GRCm38
MGSCv37287,963,517 - 87,965,150 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36287,924,199 - 87,925,832 (-)NCBIMGSCv36mm8
Celera289,719,948 - 89,721,581 (-)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or5d38MouseG protein-coupled receptor signaling pathway acts_upstream_of_or_withinISAprotein_id:BAB590382290270 PMID:14611657MGIPMID:14611657
Or5d38MouseG protein-coupled receptor signaling pathway involved_inIBAPANTHER:PTN001571548 more ...2290270 GO_CentralGO_REF:0000033
Or5d38Mousesensory perception of smell acts_upstream_of_or_withinISAprotein_id:BAB590382290270 PMID:14611657MGIPMID:14611657
Or5d38Mousesensory perception of smell involved_inIBAPANTHER:PTN001571548 more ...2290270 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or5d38Mousemembrane located_inISAprotein_id:BAB590382290270 PMID:14611657MGIPMID:14611657

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or5d38Mouseodorant binding enablesIBAPANTHER:PTN001571548 more ...2290270 GO_CentralGO_REF:0000033
Or5d38Mouseolfactory receptor activity enablesIBAPANTHER:PTN001571548 more ...2290270 GO_CentralGO_REF:0000033
Or5d38Mouseolfactory receptor activity enablesISAprotein_id:BAB590382290270 PMID:14611657MGIPMID:14611657


#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21873635   PMID:32295537  



.

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Variants in Or5d38
109 total Variants

Predicted Target Of
Summary Value
Count of predictions:175
Count of miRNA genes:151
Interacting mature miRNAs:157
Transcripts:ENSMUST00000099833
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 47 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse

1 to 10 of 47 rows






Ensembl Acc Id: ENSMUST00000099833   ⟹   ENSMUSP00000097421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl287,953,710 - 87,955,337 (-)Ensembl
GRCm38.p6 Ensembl288,123,366 - 88,124,993 (-)Ensembl
Ensembl Acc Id: ENSMUST00000217575   ⟹   ENSMUSP00000149099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl287,953,704 - 87,958,616 (-)Ensembl
GRCm38.p6 Ensembl288,123,360 - 88,128,272 (-)Ensembl
RefSeq Acc Id: NM_146650   ⟹   NP_666861
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39287,953,704 - 87,955,337 (-)NCBI
GRCm38288,123,360 - 88,124,993 (-)ENTREZGENE
MGSCv37287,963,517 - 87,965,150 (-)RGD
Celera289,719,948 - 89,721,581 (-)RGD
cM Map2 ENTREZGENE
Sequence:
1 to 9 of 9 rows
Protein RefSeqs NP_666861 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH51250 (Get FASTA)   NCBI Sequence Viewer  
  AAL61109 (Get FASTA)   NCBI Sequence Viewer  
  AAP71580 (Get FASTA)   NCBI Sequence Viewer  
  ALI87906 (Get FASTA)   NCBI Sequence Viewer  
  EDL27423 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000097421
  ENSMUSP00000097421.3
  ENSMUSP00000149099.2
1 to 9 of 9 rows
RefSeq Acc Id: NP_666861   ⟸   NM_146650
- UniProtKB: Q7TR27 (UniProtKB/TrEMBL),   Q8VFS0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000097421   ⟸   ENSMUST00000099833
Ensembl Acc Id: ENSMUSP00000149099   ⟸   ENSMUST00000217575
G-protein coupled receptors family 1 profile

Name Modeler Protein Id AA Range Protein Structure
AF-Q7TR27-F1-model_v2 AlphaFold Q7TR27 1-316 view protein structure



1 to 21 of 21 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000101078 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000099833 ENTREZGENE
  ENSMUST00000099833.6 UniProtKB/TrEMBL
  ENSMUST00000217575.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258644 UniProtKB/TrEMBL
MGD MGI:3031000 ENTREZGENE
NCBI Gene 258644 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or5d38 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q7TR27 ENTREZGENE, UniProtKB/TrEMBL
  Q8VFS0 ENTREZGENE, UniProtKB/TrEMBL
1 to 21 of 21 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or5d38  olfactory receptor family 5 subfamily D member 38  Olfr1166  olfactory receptor 1166  Symbol and/or name change 5135510 APPROVED