8430437L04Rik (RIKEN cDNA 8430437L04 gene) - Rat Genome Database

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Gene: 8430437L04Rik (RIKEN cDNA 8430437L04 gene) Mus musculus
Analyze
Symbol: 8430437L04Rik
Name: RIKEN cDNA 8430437L04 gene
RGD ID: 1611820
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC74541
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39272,533,854 - 72,559,812 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl272,533,854 - 72,559,812 (+)EnsemblGRCm39 Ensembl
GRCm38272,703,510 - 72,729,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl272,703,510 - 72,729,468 (+)EnsemblGRCm38mm10GRCm38
Celera274,389,476 - 74,415,165 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map243.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
8430437L04RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
8430437L04RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
8430437L04RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in 8430437L04Rik
1299 total Variants

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:101
Interacting mature miRNAs:105
Transcripts:ENSMUST00000124829
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 52 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse

1 to 10 of 52 rows





RefSeq Transcripts NR_040503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK018472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000124829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl272,533,854 - 72,559,812 (+)Ensembl
GRCm38.p6 Ensembl272,703,510 - 72,729,468 (+)Ensembl
RefSeq Acc Id: NR_040503
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39272,533,854 - 72,559,812 (+)NCBI
GRCm38272,703,510 - 72,729,468 (+)ENTREZGENE
Celera274,389,476 - 74,415,165 (+)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085252 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000124829 ENTREZGENE
MGD MGI:1921791 ENTREZGENE
NCBI Gene 74541 ENTREZGENE
PhenoGen 8430437L04Rik PhenoGen
RNAcentral URS0000759AB9 RNACentral