4930441J16Rik (RIKEN cDNA 4930441J16 gene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: 4930441J16Rik (RIKEN cDNA 4930441J16 gene) Mus musculus
Analyze
Symbol: 4930441J16Rik
Name: RIKEN cDNA 4930441J16 gene
RGD ID: 1608030
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: Astx1a; Astx1b; Astx1c; hypothetical protein LOC73962
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39274,129,284 - 74,138,061 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl274,127,095 - 74,138,078 (-)EnsemblGRCm39 Ensembl
GRCm38274,298,940 - 74,307,717 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl274,298,940 - 74,307,717 (-)EnsemblGRCm38mm10GRCm38
Celera275,987,400 - 75,996,194 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map244.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930441J16RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930441J16RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930441J16RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



.

.
Variants in 4930441J16Rik
449 total Variants

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:21
Interacting mature miRNAs:21
Transcripts:ENSMUST00000153743
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 50 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse

1 to 10 of 50 rows
D2Tfv5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38274,300,612 - 74,300,743UniSTSGRCm38
MGSCv37274,138,669 - 74,138,800UniSTSGRCm37
Celera275,989,068 - 75,989,199UniSTS
cM Map2 UniSTS






RefSeq Transcripts NR_040501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK015352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000153743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,129,279 - 74,138,078 (-)Ensembl
GRCm38.p6 Ensembl274,298,940 - 74,307,717 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,127,095 - 74,138,070 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261948
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,127,095 - 74,138,066 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,127,095 - 74,138,064 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,129,274 - 74,138,078 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,129,278 - 74,138,075 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,129,279 - 74,138,075 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,129,279 - 74,138,069 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261954
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,129,299 - 74,138,003 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261955
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,133,159 - 74,138,072 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,133,335 - 74,138,065 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261957
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,134,470 - 74,137,598 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,129,299 - 74,131,423 (-)Ensembl
Ensembl Acc Id: ENSMUST00000261959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl274,137,139 - 74,138,069 (-)Ensembl
RefSeq Acc Id: NR_040501
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39274,129,284 - 74,138,061 (-)NCBI
GRCm38274,298,940 - 74,307,717 (-)ENTREZGENE
Celera275,987,400 - 75,996,194 (-)ENTREZGENE
cM Map2 ENTREZGENE
Sequence:
RGD ID:6877640
Promoter ID:EPDNEW_M2271
Type:multiple initiation site
Name:4930441J16Rik_1
Description:Mus musculus RIKEN cDNA 4930441J16 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38274,307,697 - 74,307,757EPDNEW
RGD ID:15092361
Promoter ID:EPDNEWNC_M270
Type:multiple initiation site
Name:4930441J16Rik_1
Description:RIKEN cDNA 4930441J16 gene [Source:MGISymbol;Acc:MGI:1921212]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38274,307,697 - 74,307,757EPDNEWNC


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085405 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000153743 ENTREZGENE
MGD MGI:1921212 ENTREZGENE
NCBI Gene 73962 ENTREZGENE
PhenoGen 4930441J16Rik PhenoGen
RNAcentral URS000075CDD1 RNACentral