CDIN1 (CDAN1 interacting nuclease 1) - Rat Genome Database

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Gene: CDIN1 (CDAN1 interacting nuclease 1) Homo sapiens
Analyze
Symbol: CDIN1
Name: CDAN1 interacting nuclease 1
RGD ID: 1607000
HGNC Page HGNC:26929
Description: Involved in erythrocyte differentiation. Located in cytoplasm and nucleus. Implicated in congenital dyserythropoietic anemia type Ib.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C15orf41; CDAN1-interacting nuclease 1; chromosome 15 open reading frame 41; FLJ22851; HH114; hypothetical protein LOC84529; MGC11326; uncharacterized protein C15orf41
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381536,579,626 - 36,810,244 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1536,579,626 - 36,810,248 (+)EnsemblGRCh38hg38GRCh38
GRCh371536,871,827 - 37,102,445 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361534,720,098 - 34,889,739 (+)NCBINCBI36Build 36hg18NCBI36
Celera1513,631,911 - 13,862,498 (+)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1513,717,858 - 13,948,394 (+)NCBIHuRef
CHM1_11536,990,382 - 37,221,015 (+)NCBICHM1_1
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA,IEA)
nucleus  (IBA,IDA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16344560   PMID:17207965   PMID:17353931   PMID:19913121   PMID:20301759   PMID:20628086   PMID:21873635   PMID:23716552   PMID:24981860   PMID:25281560  
PMID:26496610   PMID:28514442   PMID:28986522   PMID:29031773   PMID:29049846   PMID:29117863   PMID:31191338   PMID:32239177   PMID:32293259   PMID:32296183   PMID:32518175   PMID:33121234  
PMID:33159567   PMID:33961781   PMID:34373451   PMID:35563538  


Genomics

Comparative Map Data
CDIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381536,579,626 - 36,810,244 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1536,579,626 - 36,810,248 (+)EnsemblGRCh38hg38GRCh38
GRCh371536,871,827 - 37,102,445 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361534,720,098 - 34,889,739 (+)NCBINCBI36Build 36hg18NCBI36
Celera1513,631,911 - 13,862,498 (+)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1513,717,858 - 13,948,394 (+)NCBIHuRef
CHM1_11536,990,382 - 37,221,015 (+)NCBICHM1_1
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBIT2T-CHM13v2.0
Cdin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392115,411,388 - 115,609,263 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2115,412,197 - 115,609,249 (+)EnsemblGRCm39 Ensembl
GRCm382115,580,907 - 115,778,774 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2115,581,716 - 115,778,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv372115,407,452 - 115,604,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362115,273,217 - 115,470,209 (+)NCBIMGSCv36mm8
Celera2116,724,725 - 116,922,914 (+)NCBICelera
Cytogenetic Map2E4NCBI
cM Map258.18NCBI
Cdin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83122,895,754 - 123,101,099 (+)NCBIGRCr8
mRatBN7.23102,441,553 - 102,646,935 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3102,441,704 - 102,646,682 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3106,097,270 - 106,302,329 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03114,696,296 - 114,901,360 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03112,351,477 - 112,563,803 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03107,142,734 - 107,347,381 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3107,142,762 - 107,348,650 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03113,709,675 - 113,914,205 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43101,607,751 - 101,811,485 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3101,386,865 - 101,590,149 (+)NCBICelera
Cytogenetic Map3q35NCBI
Cdin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554163,805,341 - 4,015,232 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554163,805,968 - 4,014,328 (+)NCBIChiLan1.0ChiLan1.0
CDIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21625,802,134 - 26,033,531 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11529,956,934 - 30,187,299 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01515,503,685 - 15,734,015 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11533,761,827 - 33,992,100 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1533,762,079 - 33,990,777 (+)Ensemblpanpan1.1panPan2
CDIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1304,129,366 - 4,356,771 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl304,129,082 - 4,341,136 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha304,184,136 - 4,411,392 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0304,251,032 - 4,478,505 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl304,251,216 - 4,478,949 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1304,179,015 - 4,406,403 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0304,276,695 - 4,503,833 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0304,410,703 - 4,638,214 (+)NCBIUU_Cfam_GSD_1.0
Cdin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864082,652,970 - 82,867,769 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936471500,978 - 715,885 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936471501,005 - 715,208 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1134,301,103 - 134,538,461 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11134,301,076 - 134,538,874 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21150,140,420 - 150,271,986 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12646,135,826 - 46,364,476 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2646,137,567 - 46,363,393 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604894,560,730 - 94,788,034 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248043,881,189 - 4,121,527 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248043,881,789 - 4,199,472 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDIN1
89 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001130010.2(C15orf41):c.347-2652T>C single nucleotide variant Lung cancer [RCV000099468] Chr15:36689033 [GRCh38]
Chr15:36981234 [GRCh37]
Chr15:15q14
uncertain significance
NM_001130010.2(C15orf41):c.716+18124A>G single nucleotide variant Lung cancer [RCV000099469] Chr15:36728085 [GRCh38]
Chr15:37020286 [GRCh37]
Chr15:15q14
uncertain significance
GRCh38/hg38 15q14(chr15:34995451-39735062)x1 copy number loss See cases [RCV000050890] Chr15:34995451..39735062 [GRCh38]
Chr15:35287652..40027263 [GRCh37]
Chr15:33074944..37814555 [NCBI36]
Chr15:15q14
pathogenic
GRCh38/hg38 15q13.3-14(chr15:32326136-39394068)x1 copy number loss See cases [RCV000051616] Chr15:32326136..39394068 [GRCh38]
Chr15:32618337..39686269 [GRCh37]
Chr15:30405629..37473561 [NCBI36]
Chr15:15q13.3-14
pathogenic
GRCh38/hg38 15q13.3-15.1(chr15:32635803-40233825)x1 copy number loss See cases [RCV000051617] Chr15:32635803..40233825 [GRCh38]
Chr15:32928004..40526026 [GRCh37]
Chr15:30715296..38313318 [NCBI36]
Chr15:15q13.3-15.1
pathogenic
GRCh38/hg38 15q14(chr15:34588015-39280404)x1 copy number loss See cases [RCV000051618] Chr15:34588015..39280404 [GRCh38]
Chr15:34880216..39572605 [GRCh37]
Chr15:32667508..37359897 [NCBI36]
Chr15:15q14
pathogenic
GRCh38/hg38 15q14-15.1(chr15:36531993-40787538)x3 copy number gain See cases [RCV000052341] Chr15:36531993..40787538 [GRCh38]
Chr15:36824194..41079736 [GRCh37]
Chr15:34611486..38867028 [NCBI36]
Chr15:15q14-15.1
pathogenic
NM_001321759.2(CDIN1):c.533T>A (p.Leu178Gln) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV000083301] Chr15:36697379 [GRCh38]
Chr15:36989580 [GRCh37]
Chr15:15q14
pathogenic|likely pathogenic
NM_001321759.2(CDIN1):c.281A>G (p.Tyr94Cys) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV000083302] Chr15:36657840 [GRCh38]
Chr15:36950041 [GRCh37]
Chr15:15q14
pathogenic|likely pathogenic
NM_001321759.2(CDIN1):c.274-82T>A single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV001554615]|not provided [RCV001647438] Chr15:36657751 [GRCh38]
Chr15:36949952 [GRCh37]
Chr15:15q14
benign
GRCh38/hg38 15q11.2-14(chr15:23319714-38089582)x1 copy number loss See cases [RCV000135953] Chr15:23319714..38089582 [GRCh38]
Chr15:22698522..38381783 [GRCh37]
Chr15:20249886..36169075 [NCBI36]
Chr15:15q11.2-14
pathogenic
GRCh38/hg38 15q11.2-14(chr15:23319714-38545325)x3 copy number gain See cases [RCV000138530] Chr15:23319714..38545325 [GRCh38]
Chr15:22765628..38837526 [GRCh37]
Chr15:20316992..36624818 [NCBI36]
Chr15:15q11.2-14
pathogenic
GRCh38/hg38 15q14(chr15:36264417-38045964)x3 copy number gain See cases [RCV000142163] Chr15:36264417..38045964 [GRCh38]
Chr15:36556618..38338165 [GRCh37]
Chr15:34343910..36125457 [NCBI36]
Chr15:15q14
uncertain significance
GRCh38/hg38 15q11.2-14(chr15:25033869-37204304)x1 copy number loss See cases [RCV000143205] Chr15:25033869..37204304 [GRCh38]
Chr15:25279016..37496505 [GRCh37]
Chr15:22830109..35283797 [NCBI36]
Chr15:15q11.2-14
pathogenic
NM_001321759.2(CDIN1):c.427-15C>G single nucleotide variant not provided [RCV002518603]|not specified [RCV000243855] Chr15:36692111 [GRCh38]
Chr15:36984312 [GRCh37]
Chr15:15q14
benign|likely benign
NM_001321759.2(CDIN1):c.148-19G>T single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV001554502]|not provided [RCV001711677]|not specified [RCV000242162] Chr15:36645204 [GRCh38]
Chr15:36937405 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.531C>T (p.Asn177=) single nucleotide variant not provided [RCV002229951]|not specified [RCV000246997] Chr15:36697377 [GRCh38]
Chr15:36989578 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.217C>G (p.Leu73Val) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV001554503]|not provided [RCV001725145]|not specified [RCV000247174] Chr15:36654102 [GRCh38]
Chr15:36946303 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.423T>C (p.Tyr141=) single nucleotide variant not provided [RCV001651153]|not specified [RCV000252130] Chr15:36691761 [GRCh38]
Chr15:36983962 [GRCh37]
Chr15:15q14
benign
GRCh37/hg19 15q11.2-14(chr15:24179003-37238599)x1 copy number loss See cases [RCV000449139] Chr15:24179003..37238599 [GRCh37]
Chr15:15q11.2-14
pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
GRCh37/hg19 15q14(chr15:36905047-40037396)x4 copy number gain See cases [RCV000448806] Chr15:36905047..40037396 [GRCh37]
Chr15:15q14
pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3
pathogenic
GRCh37/hg19 15q14-15.1 chr15:34638237..42057083 complex variant complex Spindle cell sarcoma [RCV000714282] Chr15:34640169..42054561 [GRCh37]
Chr15:15q14-15.1
pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3
pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3
pathogenic
NM_001321759.2(CDIN1):c.611-255C>T single nucleotide variant not provided [RCV001690951] Chr15:36709601 [GRCh38]
Chr15:37001802 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.545-237G>T single nucleotide variant not provided [RCV001667001] Chr15:36708986 [GRCh38]
Chr15:37001187 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.477-55G>A single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV001554617]|not provided [RCV001638171] Chr15:36697268 [GRCh38]
Chr15:36989469 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.689A>C (p.His230Pro) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV000853478] Chr15:36709934 [GRCh38]
Chr15:37002135 [GRCh37]
Chr15:15q14
likely pathogenic
NM_001321759.2(CDIN1):c.45A>C (p.Leu15=) single nucleotide variant CDIN1-related disorder [RCV003970473]|not provided [RCV000919334] Chr15:36579905 [GRCh38]
Chr15:36872106 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.185C>T (p.Ser62Leu) single nucleotide variant CDIN1-related disorder [RCV003930560]|not provided [RCV000882050] Chr15:36645260 [GRCh38]
Chr15:36937461 [GRCh37]
Chr15:15q14
likely benign|conflicting interpretations of pathogenicity
GRCh37/hg19 15q14(chr15:36834381-37066391)x3 copy number gain not provided [RCV000845726] Chr15:36834381..37066391 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.180T>C (p.His60=) single nucleotide variant not provided [RCV000918872] Chr15:36645255 [GRCh38]
Chr15:36937456 [GRCh37]
Chr15:15q14
likely benign
GRCh37/hg19 15q14(chr15:34197488-38656254)x1 copy number loss not provided [RCV001006677] Chr15:34197488..38656254 [GRCh37]
Chr15:15q14
pathogenic
NM_001321759.2(CDIN1):c.59C>G (p.Pro20Arg) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV000853476] Chr15:36579919 [GRCh38]
Chr15:36872120 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.707A>G (p.Tyr236Cys) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV000853479] Chr15:36709952 [GRCh38]
Chr15:37002153 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.716+36850G>C single nucleotide variant not provided [RCV001616967] Chr15:36746811 [GRCh38]
Chr15:37039012 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.212+208TG[18] microsatellite not provided [RCV001611620] Chr15:36645495..36645496 [GRCh38]
Chr15:36937696..36937697 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.476+33T>C single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV001554616]|not provided [RCV001541135] Chr15:36692208 [GRCh38]
Chr15:36984409 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.716+36947C>G single nucleotide variant not provided [RCV001599052] Chr15:36746908 [GRCh38]
Chr15:37039109 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.281A>C (p.Tyr94Ser) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV000853477]|not provided [RCV003727833] Chr15:36657840 [GRCh38]
Chr15:36950041 [GRCh37]
Chr15:15q14
likely pathogenic|uncertain significance
NC_000015.10:g.36579414G>A single nucleotide variant not provided [RCV001718459] Chr15:36579414 [GRCh38]
Chr15:36871615 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.101+207T>C single nucleotide variant not provided [RCV001656043] Chr15:36580168 [GRCh38]
Chr15:36872369 [GRCh37]
Chr15:15q14
benign
NC_000015.10:g.36579408C>T single nucleotide variant not provided [RCV001715946] Chr15:36579408 [GRCh38]
Chr15:36871609 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.212+208TG[20] microsatellite not provided [RCV001677447] Chr15:36645494..36645495 [GRCh38]
Chr15:36937695..36937696 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.611-224A>G single nucleotide variant not provided [RCV001678148] Chr15:36709632 [GRCh38]
Chr15:37001833 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.212+118A>C single nucleotide variant not provided [RCV001598053] Chr15:36645405 [GRCh38]
Chr15:36937606 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.147+269C>T single nucleotide variant not provided [RCV001718456] Chr15:36644592 [GRCh38]
Chr15:36936793 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.611-170G>C single nucleotide variant not provided [RCV001686678] Chr15:36709686 [GRCh38]
Chr15:37001887 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.426+26A>G single nucleotide variant not provided [RCV001710141] Chr15:36691790 [GRCh38]
Chr15:36983991 [GRCh37]
Chr15:15q14
benign
NC_000015.10:g.36579272C>T single nucleotide variant not provided [RCV001541888] Chr15:36579272 [GRCh38]
Chr15:36871473 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.716+36711_716+36712insGC insertion not provided [RCV001708786] Chr15:36746671..36746672 [GRCh38]
Chr15:37038872..37038873 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.346+255A>T single nucleotide variant not provided [RCV001678688] Chr15:36658160 [GRCh38]
Chr15:36950361 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.273+82C>T single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV001554614]|not provided [RCV001528070] Chr15:36654240 [GRCh38]
Chr15:36946441 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.477-184del deletion not provided [RCV001725460] Chr15:36697129 [GRCh38]
Chr15:36989330 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.716+36816del deletion not provided [RCV001615651] Chr15:36746753 [GRCh38]
Chr15:37038954 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.213-123A>G single nucleotide variant not provided [RCV001609492] Chr15:36653975 [GRCh38]
Chr15:36946176 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.477-294G>T single nucleotide variant not provided [RCV001611837] Chr15:36697029 [GRCh38]
Chr15:36697029..36697030 [GRCh38]
Chr15:36989230 [GRCh37]
Chr15:36989230..36989231 [GRCh37]
Chr15:15q14
benign
NC_000015.9:g.(?_32964879)_(91358519_?)dup duplication Bloom syndrome [RCV001343104]|Familial colorectal cancer [RCV001325176] Chr15:32964879..91358519 [GRCh37]
Chr15:15q13.3-26.1
uncertain significance
NM_001321759.2(CDIN1):c.46G>A (p.Val16Met) single nucleotide variant not provided [RCV001508754] Chr15:36579906 [GRCh38]
Chr15:36872107 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.716+36816dup duplication not provided [RCV001670484] Chr15:36746752..36746753 [GRCh38]
Chr15:37038953..37038954 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.213-146G>A single nucleotide variant not provided [RCV001671365] Chr15:36653952 [GRCh38]
Chr15:36946153 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.-105C>T single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV001554501]|not provided [RCV001538866] Chr15:36579756 [GRCh38]
Chr15:36871957 [GRCh37]
Chr15:15q14
benign
NC_000015.10:g.36579275G>T single nucleotide variant not provided [RCV001644063] Chr15:36579275 [GRCh38]
Chr15:36871476 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.716+37023A>C single nucleotide variant not provided [RCV001654750] Chr15:36746984 [GRCh38]
Chr15:37039185 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.610+256A>T single nucleotide variant not provided [RCV001698798] Chr15:36709544 [GRCh38]
Chr15:37001745 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.430A>G (p.Ile144Val) single nucleotide variant not provided [RCV001508755] Chr15:36692129 [GRCh38]
Chr15:36984330 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.26A>G (p.Asp9Gly) single nucleotide variant not provided [RCV001757013] Chr15:36579886 [GRCh38]
Chr15:36872087 [GRCh37]
Chr15:15q14
conflicting interpretations of pathogenicity|uncertain significance
NM_001321759.2(CDIN1):c.723del (p.Pro242fs) deletion not provided [RCV001772553] Chr15:36808328 [GRCh38]
Chr15:37100529 [GRCh37]
Chr15:15q14
uncertain significance
GRCh37/hg19 15q14(chr15:36852134-37429248) copy number gain not specified [RCV002052461] Chr15:36852134..37429248 [GRCh37]
Chr15:15q14
uncertain significance
GRCh37/hg19 15q14(chr15:33809650-40027263)x1 copy number loss 15q14 microdeletion syndrome [RCV002279741] Chr15:33809650..40027263 [GRCh37]
Chr15:15q14
pathogenic
NM_001321759.2(CDIN1):c.401G>T (p.Gly134Val) single nucleotide variant not provided [RCV002967775] Chr15:36691739 [GRCh38]
Chr15:36983940 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.838A>G (p.Ile280Val) single nucleotide variant not provided [RCV002996496] Chr15:36808445 [GRCh38]
Chr15:37100646 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.545-4G>A single nucleotide variant not provided [RCV002866109] Chr15:36709219 [GRCh38]
Chr15:37001420 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.98C>T (p.Pro33Leu) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV003146696]|not provided [RCV002970710] Chr15:36579958 [GRCh38]
Chr15:36872159 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.269A>G (p.Asn90Ser) single nucleotide variant not provided [RCV002755355] Chr15:36654154 [GRCh38]
Chr15:36946355 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.102-18T>G single nucleotide variant not provided [RCV002690110] Chr15:36644260 [GRCh38]
Chr15:36936461 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.740A>G (p.Tyr247Cys) single nucleotide variant not provided [RCV002735297] Chr15:36808347 [GRCh38]
Chr15:37100548 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.607G>T (p.Val203Phe) single nucleotide variant not provided [RCV002979809] Chr15:36709285 [GRCh38]
Chr15:37001486 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.545-5T>C single nucleotide variant not provided [RCV002622051] Chr15:36709218 [GRCh38]
Chr15:37001419 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.522A>G (p.Leu174=) single nucleotide variant not provided [RCV002976493] Chr15:36697368 [GRCh38]
Chr15:36989569 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.426+20A>G single nucleotide variant not provided [RCV002781390] Chr15:36691784 [GRCh38]
Chr15:36983985 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.477-15dup duplication not provided [RCV002872745] Chr15:36697306..36697307 [GRCh38]
Chr15:36989507..36989508 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.476+13A>T single nucleotide variant not provided [RCV002711317] Chr15:36692188 [GRCh38]
Chr15:36984389 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.439G>A (p.Asp147Asn) single nucleotide variant not provided [RCV002596134] Chr15:36692138 [GRCh38]
Chr15:36984339 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.112G>C (p.Ala38Pro) single nucleotide variant not provided [RCV002572805] Chr15:36644288 [GRCh38]
Chr15:36936489 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.775C>T (p.Arg259Trp) single nucleotide variant not provided [RCV002602852] Chr15:36808382 [GRCh38]
Chr15:37100583 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.176A>G (p.His59Arg) single nucleotide variant not provided [RCV002745923] Chr15:36645251 [GRCh38]
Chr15:36937452 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.776G>A (p.Arg259Gln) single nucleotide variant not provided [RCV003062206] Chr15:36808383 [GRCh38]
Chr15:37100584 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.101+17C>T single nucleotide variant not provided [RCV002832879] Chr15:36579978 [GRCh38]
Chr15:36872179 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.150A>G (p.Lys50=) single nucleotide variant not provided [RCV002675995] Chr15:36645225 [GRCh38]
Chr15:36937426 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.544+15C>T single nucleotide variant not provided [RCV002602005] Chr15:36697405 [GRCh38]
Chr15:36989606 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.560G>C (p.Arg187Pro) single nucleotide variant not provided [RCV002725914] Chr15:36709238 [GRCh38]
Chr15:37001439 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.477-20C>T single nucleotide variant not provided [RCV002943156] Chr15:36697303 [GRCh38]
Chr15:36989504 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.812C>A (p.Thr271Lys) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV003143861]|not provided [RCV003328496] Chr15:36808419 [GRCh38]
Chr15:37100620 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.427-13T>C single nucleotide variant not provided [RCV003880529] Chr15:36692113 [GRCh38]
Chr15:36984314 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.307A>T (p.Ile103Leu) single nucleotide variant not provided [RCV003482480] Chr15:36657866 [GRCh38]
Chr15:36950067 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.333C>T (p.His111=) single nucleotide variant not provided [RCV003411141] Chr15:36657892 [GRCh38]
Chr15:36950093 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.476+20T>G single nucleotide variant not provided [RCV003661800] Chr15:36692195 [GRCh38]
Chr15:36984396 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.415C>G (p.Gln139Glu) single nucleotide variant not provided [RCV003547204] Chr15:36691753 [GRCh38]
Chr15:36983954 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.298G>T (p.Ala100Ser) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV003492939] Chr15:36657857 [GRCh38]
Chr15:36950058 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.148-16G>T single nucleotide variant not provided [RCV003880186] Chr15:36645207 [GRCh38]
Chr15:36937408 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.248C>T (p.Pro83Leu) single nucleotide variant not provided [RCV003573833] Chr15:36654133 [GRCh38]
Chr15:36946334 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.610+16_610+17del microsatellite not provided [RCV003881527] Chr15:36709302..36709303 [GRCh38]
Chr15:37001503..37001504 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.620G>A (p.Gly207Glu) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV003492938] Chr15:36709865 [GRCh38]
Chr15:37002066 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.610+15T>A single nucleotide variant not provided [RCV003855524] Chr15:36709303 [GRCh38]
Chr15:37001504 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.818T>C (p.Ile273Thr) single nucleotide variant not provided [RCV003726689] Chr15:36808425 [GRCh38]
Chr15:37100626 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.186G>A (p.Ser62=) single nucleotide variant not provided [RCV003717535] Chr15:36645261 [GRCh38]
Chr15:36937462 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.346+15T>C single nucleotide variant not provided [RCV003845510] Chr15:36657920 [GRCh38]
Chr15:36950121 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.148-8dup duplication not provided [RCV003821498] Chr15:36645207..36645208 [GRCh38]
Chr15:36937408..36937409 [GRCh37]
Chr15:15q14
benign
NM_001321759.2(CDIN1):c.260_263del (p.Asp87fs) deletion not provided [RCV003542779] Chr15:36654145..36654148 [GRCh38]
Chr15:36946346..36946349 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.147+17T>A single nucleotide variant not provided [RCV003821822] Chr15:36644340 [GRCh38]
Chr15:36936541 [GRCh37]
Chr15:15q14
likely benign
GRCh37/hg19 15q14(chr15:34990168-39236311)x1 copy number loss not specified [RCV003987101] Chr15:34990168..39236311 [GRCh37]
Chr15:15q14
pathogenic
GRCh37/hg19 15q11.2-14(chr15:22836883-39108014)x1 copy number loss not specified [RCV003987110] Chr15:22836883..39108014 [GRCh37]
Chr15:15q11.2-14
pathogenic
GRCh37/hg19 15q11.2-21.2(chr15:22770421-50347130)x3 copy number gain not specified [RCV003987108] Chr15:22770421..50347130 [GRCh37]
Chr15:15q11.2-21.2
pathogenic
NM_001321759.2(CDIN1):c.545-15T>C single nucleotide variant not provided [RCV003712203] Chr15:36709208 [GRCh38]
Chr15:37001409 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.141G>A (p.Glu47=) single nucleotide variant not provided [RCV003843309] Chr15:36644317 [GRCh38]
Chr15:36936518 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.610+8C>G single nucleotide variant not provided [RCV003729921] Chr15:36709296 [GRCh38]
Chr15:37001497 [GRCh37]
Chr15:15q14
likely benign
NM_001321759.2(CDIN1):c.155T>G (p.Ile52Ser) single nucleotide variant not provided [RCV003858710] Chr15:36645230 [GRCh38]
Chr15:36937431 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.206A>G (p.Tyr69Cys) single nucleotide variant Congenital dyserythropoietic anemia type type 1B [RCV003990485] Chr15:36645281 [GRCh38]
Chr15:36937482 [GRCh37]
Chr15:15q14
uncertain significance
NM_001321759.2(CDIN1):c.334G>A (p.Glu112Lys) single nucleotide variant not specified [RCV004428288] Chr15:36657893 [GRCh38]
Chr15:36950094 [GRCh37]
Chr15:15q14
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4394
Count of miRNA genes:872
Interacting mature miRNAs:1013
Transcripts:ENST00000338183, ENST00000437989, ENST00000562489, ENST00000562877, ENST00000563167, ENST00000564586, ENST00000565792, ENST00000566621, ENST00000566677, ENST00000566807, ENST00000566932, ENST00000567389, ENST00000567573, ENST00000569302, ENST00000570265
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406913345GWAS562321_Hrestless legs syndrome QTL GWAS562321 (human)9e-15restless legs syndrome153659403936594040Human
407281612GWAS930588_HAlzheimer disease, gastroesophageal reflux disease QTL GWAS930588 (human)0.000001Alzheimer disease, gastroesophageal reflux disease153669957936699580Human
407272205GWAS921181_Hbody height QTL GWAS921181 (human)0.0000003body height (VT:0001253)body height (CMO:0000106)153675073136750732Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407392414GWAS1041390_Hcolorectal cancer, overall survival QTL GWAS1041390 (human)0.000002colorectal cancer, overall survival153669702936697030Human
407349087GWAS998063_Helectrocardiography QTL GWAS998063 (human)4e-11electrocardiography153659481836594819Human
407349086GWAS998062_Helectrocardiography QTL GWAS998062 (human)2e-11electrocardiography153659481836594819Human
407349278GWAS998254_Helectrocardiography QTL GWAS998254 (human)5e-09electrocardiography153659481836594819Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
407349085GWAS998061_Helectrocardiography QTL GWAS998061 (human)1e-10electrocardiography153659481836594819Human
407349277GWAS998253_Helectrocardiography QTL GWAS998253 (human)3e-09electrocardiography153659481836594819Human
407349084GWAS998060_Helectrocardiography QTL GWAS998060 (human)9e-09electrocardiography153659481836594819Human
407349276GWAS998252_Helectrocardiography QTL GWAS998252 (human)1e-09electrocardiography153659481836594819Human
407349083GWAS998059_Helectrocardiography QTL GWAS998059 (human)3e-11electrocardiography153659481836594819Human
407349275GWAS998251_Helectrocardiography QTL GWAS998251 (human)6e-09electrocardiography153659481836594819Human
407349082GWAS998058_Helectrocardiography QTL GWAS998058 (human)9e-12electrocardiography153659481836594819Human
407349081GWAS998057_Helectrocardiography QTL GWAS998057 (human)1e-12electrocardiography153659481836594819Human
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
406940128GWAS589104_Hrestless legs syndrome QTL GWAS589104 (human)7e-09restless legs syndrome153659403936594040Human
407349092GWAS998068_Helectrocardiography QTL GWAS998068 (human)8e-11electrocardiography153659481836594819Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
407349091GWAS998067_Helectrocardiography QTL GWAS998067 (human)6e-10electrocardiography153659481836594819Human
407349090GWAS998066_Helectrocardiography QTL GWAS998066 (human)3e-10electrocardiography153659481836594819Human
407349089GWAS998065_Helectrocardiography QTL GWAS998065 (human)9e-11electrocardiography153659481836594819Human
407282464GWAS931440_Hvaginal microbiome measurement QTL GWAS931440 (human)0.000009vaginal microbiome measurement153663315836633159Human
407349088GWAS998064_Helectrocardiography QTL GWAS998064 (human)5e-11electrocardiography153659481836594819Human
406962984GWAS611960_HCOVID-19 QTL GWAS611960 (human)2e-09COVID-19153658186736581868Human
407257580GWAS906556_Hvaginal microbiome measurement QTL GWAS906556 (human)0.000006vaginal microbiome measurement153663315836633159Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
407348407GWAS997383_Helectrocardiography QTL GWAS997383 (human)2e-10electrocardiography153659481836594819Human
407348406GWAS997382_Helectrocardiography QTL GWAS997382 (human)2e-09electrocardiography153659481836594819Human
407348405GWAS997381_Helectrocardiography QTL GWAS997381 (human)2e-08electrocardiography153659481836594819Human
407348404GWAS997380_Helectrocardiography QTL GWAS997380 (human)6e-11electrocardiography153659481836594819Human
407206070GWAS855046_Hage at assessment, lateral ventricle volume change measurement QTL GWAS855046 (human)0.000008age at assessment, lateral ventricle volume change measurement153680036236800363Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
407348403GWAS997379_Helectrocardiography QTL GWAS997379 (human)4e-10electrocardiography153659481836594819Human
407348402GWAS997378_Helectrocardiography QTL GWAS997378 (human)4e-13electrocardiography153659481836594819Human
407382847GWAS1031823_Hobsolete_red blood cell distribution width QTL GWAS1031823 (human)2e-14obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)153658499536584996Human
407348409GWAS997385_Helectrocardiography QTL GWAS997385 (human)4e-12electrocardiography153659481836594819Human
407348408GWAS997384_Helectrocardiography QTL GWAS997384 (human)8e-10electrocardiography153659481836594819Human

Markers in Region
GATA50C03  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371536,993,203 - 36,993,486UniSTSGRCh37
Celera1513,753,229 - 13,753,508UniSTS
HuRef1513,839,017 - 13,839,296UniSTS
Marshfield Genetic Map1534.83RGD
WI-18117  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371537,080,940 - 37,081,067UniSTSGRCh37
Build 361534,868,232 - 34,868,359RGDNCBI36
Celera1513,840,984 - 13,841,111RGD
Cytogenetic Map15q14UniSTS
HuRef1513,926,864 - 13,926,991UniSTS
GeneMap99-GB4 RH Map15108.85UniSTS
Whitehead-RH Map1578.6UniSTS
SHGC-105791  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371537,094,991 - 37,095,277UniSTSGRCh37
Build 361534,882,283 - 34,882,569RGDNCBI36
Celera1513,855,033 - 13,855,319RGD
Cytogenetic Map15q14UniSTS
HuRef1513,940,931 - 13,941,217UniSTS
TNG Radiation Hybrid Map159495.0UniSTS
SHGC-109985  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371536,960,113 - 36,960,383UniSTSGRCh37
Build 361534,747,405 - 34,747,675RGDNCBI36
Celera1513,720,138 - 13,720,408RGD
Cytogenetic Map15q14UniSTS
HuRef1513,805,930 - 13,806,200UniSTS
TNG Radiation Hybrid Map159551.0UniSTS
SGC38378  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371537,102,027 - 37,102,302UniSTSGRCh37
Build 361534,889,319 - 34,889,594RGDNCBI36
Celera1513,862,076 - 13,862,351RGD
Cytogenetic Map15q14UniSTS
HuRef1513,947,974 - 13,948,247UniSTS
GeneMap99-GB4 RH Map15146.69UniSTS
Whitehead-RH Map1575.5UniSTS
D15S1266  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371537,081,603 - 37,081,743UniSTSGRCh37
Build 361534,868,895 - 34,869,035RGDNCBI36
Celera1513,841,647 - 13,841,787RGD
Cytogenetic Map15q14UniSTS
HuRef1513,927,527 - 13,927,667UniSTS
GeneMap99-G3 RH Map15620.0UniSTS
WI-13895  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371537,059,218 - 37,059,367UniSTSGRCh37
Build 361534,846,510 - 34,846,659RGDNCBI36
Celera1513,819,256 - 13,819,405RGD
Cytogenetic Map15q14UniSTS
HuRef1513,905,149 - 13,905,298UniSTS
GeneMap99-GB4 RH Map15147.67UniSTS
Whitehead-RH Map1573.0UniSTS
G17854  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371537,050,428 - 37,050,680UniSTSGRCh37
Build 361534,837,720 - 34,837,972RGDNCBI36
Celera1513,810,462 - 13,810,714RGD
Cytogenetic Map15q14UniSTS
HuRef1513,896,355 - 13,896,607UniSTS
HH114__6715  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371537,101,718 - 37,102,608UniSTSGRCh37
Build 361534,889,010 - 34,889,900RGDNCBI36
Celera1513,861,767 - 13,862,657RGD
HuRef1513,947,665 - 13,948,553UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2437 2788 2251 4969 1726 2351 5 622 1946 465 2269 7298 6465 52 3730 851 1742 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_034055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054378995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054378996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054378997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054378998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007064492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008489019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008489020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008489021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008489022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008489023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008489024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_931921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_931922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_931924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA581466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC013640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC019016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC103988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF114263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL526474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA467314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA534917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000338183   ⟹   ENSP00000342433
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,640,605 - 36,810,231 (+)Ensembl
Ensembl Acc Id: ENST00000437989   ⟹   ENSP00000401362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,844 - 36,810,244 (+)Ensembl
Ensembl Acc Id: ENST00000562489   ⟹   ENSP00000454334
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,702,009 - 36,808,781 (+)Ensembl
Ensembl Acc Id: ENST00000562877   ⟹   ENSP00000457854
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,594,900 - 36,808,453 (+)Ensembl
Ensembl Acc Id: ENST00000563167
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,755,945 - 36,809,347 (+)Ensembl
Ensembl Acc Id: ENST00000564586   ⟹   ENSP00000457227
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,642 - 36,691,754 (+)Ensembl
Ensembl Acc Id: ENST00000565792
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,696,407 - 36,810,248 (+)Ensembl
Ensembl Acc Id: ENST00000566621   ⟹   ENSP00000455397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,626 - 36,810,244 (+)Ensembl
Ensembl Acc Id: ENST00000566677
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,704,313 - 36,809,498 (+)Ensembl
Ensembl Acc Id: ENST00000566807   ⟹   ENSP00000454831
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,594,869 - 36,709,906 (+)Ensembl
Ensembl Acc Id: ENST00000566932
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,702,050 - 36,808,457 (+)Ensembl
Ensembl Acc Id: ENST00000567389   ⟹   ENSP00000456736
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,594,894 - 36,810,246 (+)Ensembl
Ensembl Acc Id: ENST00000567573
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,638 - 36,648,757 (+)Ensembl
Ensembl Acc Id: ENST00000569302   ⟹   ENSP00000456477
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,645 - 36,810,050 (+)Ensembl
Ensembl Acc Id: ENST00000570265   ⟹   ENSP00000493669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,634 - 36,747,241 (+)Ensembl
Ensembl Acc Id: ENST00000642817   ⟹   ENSP00000495947
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,652 - 36,809,950 (+)Ensembl
Ensembl Acc Id: ENST00000643612   ⟹   ENSP00000496325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,594,877 - 36,810,069 (+)Ensembl
Ensembl Acc Id: ENST00000643822   ⟹   ENSP00000493719
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,767 - 36,657,873 (+)Ensembl
Ensembl Acc Id: ENST00000643837
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,687 - 36,668,148 (+)Ensembl
Ensembl Acc Id: ENST00000646533   ⟹   ENSP00000494718
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,710 - 36,810,157 (+)Ensembl
Ensembl Acc Id: ENST00000646657   ⟹   ENSP00000495542
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,579,783 - 36,810,046 (+)Ensembl
Ensembl Acc Id: ENST00000647059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,645,283 - 36,658,336 (+)Ensembl
RefSeq Acc Id: NM_001130010   ⟹   NP_001123482
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
GRCh371536,871,812 - 37,102,449 (+)RGD
Celera1513,631,911 - 13,862,498 (+)RGD
HuRef1513,717,858 - 13,948,394 (+)ENTREZGENE
CHM1_11536,990,374 - 37,221,027 (+)NCBI
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290232   ⟹   NP_001277161
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,594,877 - 36,810,244 (+)NCBI
CHM1_11537,005,646 - 37,219,258 (+)NCBI
T2T-CHM13v2.01534,400,376 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290233   ⟹   NP_001277162
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,747,241 (+)NCBI
CHM1_11536,990,374 - 37,157,968 (+)NCBI
T2T-CHM13v2.01534,385,147 - 34,552,714 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001321756   ⟹   NP_001308685
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
CHM1_11536,990,374 - 37,221,027 (+)NCBI
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001321757   ⟹   NP_001308686
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
CHM1_11536,990,374 - 37,221,027 (+)NCBI
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001321758   ⟹   NP_001308687
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
CHM1_11536,990,374 - 37,221,027 (+)NCBI
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001321759   ⟹   NP_001308688
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
CHM1_11536,990,374 - 37,221,027 (+)NCBI
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001321760   ⟹   NP_001308689
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
CHM1_11536,990,374 - 37,221,027 (+)NCBI
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001321761   ⟹   NP_001308690
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
CHM1_11536,990,374 - 37,221,027 (+)NCBI
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: NM_032499   ⟹   NP_115888
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,594,877 - 36,810,244 (+)NCBI
GRCh371536,871,812 - 37,102,449 (+)RGD
Build 361534,720,098 - 34,889,739 (+)NCBI Archive
Celera1513,631,911 - 13,862,498 (+)RGD
HuRef1513,717,858 - 13,948,394 (+)ENTREZGENE
CHM1_11537,005,646 - 37,221,027 (+)NCBI
T2T-CHM13v2.01534,400,376 - 34,615,722 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017022676   ⟹   XP_016878165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017022677   ⟹   XP_016878166
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047433171   ⟹   XP_047289127
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,695,240 (+)NCBI
RefSeq Acc Id: XM_047433172   ⟹   XP_047289128
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,695,240 (+)NCBI
RefSeq Acc Id: XM_047433173   ⟹   XP_047289129
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,695,240 (+)NCBI
RefSeq Acc Id: XM_047433174   ⟹   XP_047289130
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,810,244 (+)NCBI
RefSeq Acc Id: XM_047433175   ⟹   XP_047289131
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,695,240 (+)NCBI
RefSeq Acc Id: XM_047433176   ⟹   XP_047289132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,658,270 - 36,810,244 (+)NCBI
RefSeq Acc Id: XM_054378995   ⟹   XP_054234970
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
RefSeq Acc Id: XM_054378996   ⟹   XP_054234971
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
RefSeq Acc Id: XM_054378997   ⟹   XP_054234972
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,615,722 (+)NCBI
RefSeq Acc Id: XM_054378998   ⟹   XP_054234973
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,463,783 - 34,615,722 (+)NCBI
RefSeq Acc Id: XR_007064491
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,695,240 (+)NCBI
RefSeq Acc Id: XR_007064492
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,579,626 - 36,695,240 (+)NCBI
RefSeq Acc Id: XR_008489019
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,514,716 (+)NCBI
RefSeq Acc Id: XR_008489020
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,514,716 (+)NCBI
RefSeq Acc Id: XR_008489021
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,514,716 (+)NCBI
RefSeq Acc Id: XR_008489022
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,514,716 (+)NCBI
RefSeq Acc Id: XR_008489023
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,514,716 (+)NCBI
RefSeq Acc Id: XR_008489024
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01534,385,147 - 34,514,716 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001123482 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277161 (Get FASTA)   NCBI Sequence Viewer  
  NP_001277162 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308685 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308686 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308687 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308688 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308689 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308690 (Get FASTA)   NCBI Sequence Viewer  
  NP_115888 (Get FASTA)   NCBI Sequence Viewer  
  XP_016878165 (Get FASTA)   NCBI Sequence Viewer  
  XP_016878166 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289127 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289128 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289129 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289130 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289131 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289132 (Get FASTA)   NCBI Sequence Viewer  
  XP_054234970 (Get FASTA)   NCBI Sequence Viewer  
  XP_054234971 (Get FASTA)   NCBI Sequence Viewer  
  XP_054234972 (Get FASTA)   NCBI Sequence Viewer  
  XP_054234973 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD29606 (Get FASTA)   NCBI Sequence Viewer  
  AAH06254 (Get FASTA)   NCBI Sequence Viewer  
  BAG37834 (Get FASTA)   NCBI Sequence Viewer  
  EAW92336 (Get FASTA)   NCBI Sequence Viewer  
  EAW92337 (Get FASTA)   NCBI Sequence Viewer  
  EAW92338 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000342433.4
  ENSP00000401362
  ENSP00000401362.2
  ENSP00000454334.1
  ENSP00000454831.1
  ENSP00000455397
  ENSP00000455397.1
  ENSP00000456477
  ENSP00000456477.1
  ENSP00000456736
  ENSP00000456736.1
  ENSP00000457227.1
  ENSP00000457854
  ENSP00000457854.1
  ENSP00000493669
  ENSP00000493669.1
  ENSP00000493719.1
  ENSP00000494718
  ENSP00000494718.1
  ENSP00000495542.1
  ENSP00000495947.1
  ENSP00000496325
  ENSP00000496325.1
GenBank Protein Q9Y2V0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001123482   ⟸   NM_001130010
- Peptide Label: isoform 1
- UniProtKB: B2RD87 (UniProtKB/Swiss-Prot),   Q9Y2V0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_115888   ⟸   NM_032499
- Peptide Label: isoform 2
- UniProtKB: Q9Y2V0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277162   ⟸   NM_001290233
- Peptide Label: isoform 3
- UniProtKB: A0A2R8YD89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277161   ⟸   NM_001290232
- Peptide Label: isoform 2
- UniProtKB: Q9Y2V0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001308686   ⟸   NM_001321757
- Peptide Label: isoform 4
- UniProtKB: A0A2R8Y7J6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308690   ⟸   NM_001321761
- Peptide Label: isoform 7
- UniProtKB: H3BS01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308688   ⟸   NM_001321759
- Peptide Label: isoform 1
- UniProtKB: B2RD87 (UniProtKB/Swiss-Prot),   Q9Y2V0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001308689   ⟸   NM_001321760
- Peptide Label: isoform 6
- UniProtKB: A0A2R8YEZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001308685   ⟸   NM_001321756
- Peptide Label: isoform 2
- UniProtKB: Q9Y2V0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001308687   ⟸   NM_001321758
- Peptide Label: isoform 5
- Sequence:
RefSeq Acc Id: XP_016878165   ⟸   XM_017022676
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016878166   ⟸   XM_017022677
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSP00000401362   ⟸   ENST00000437989
Ensembl Acc Id: ENSP00000493669   ⟸   ENST00000570265
Ensembl Acc Id: ENSP00000342433   ⟸   ENST00000338183
Ensembl Acc Id: ENSP00000457854   ⟸   ENST00000562877
Ensembl Acc Id: ENSP00000454334   ⟸   ENST00000562489
Ensembl Acc Id: ENSP00000495947   ⟸   ENST00000642817
Ensembl Acc Id: ENSP00000496325   ⟸   ENST00000643612
Ensembl Acc Id: ENSP00000457227   ⟸   ENST00000564586
Ensembl Acc Id: ENSP00000493719   ⟸   ENST00000643822
Ensembl Acc Id: ENSP00000455397   ⟸   ENST00000566621
Ensembl Acc Id: ENSP00000454831   ⟸   ENST00000566807
Ensembl Acc Id: ENSP00000456736   ⟸   ENST00000567389
Ensembl Acc Id: ENSP00000495542   ⟸   ENST00000646657
Ensembl Acc Id: ENSP00000494718   ⟸   ENST00000646533
Ensembl Acc Id: ENSP00000456477   ⟸   ENST00000569302
RefSeq Acc Id: XP_047289130   ⟸   XM_047433174
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047289127   ⟸   XM_047433171
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047289128   ⟸   XM_047433172
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047289129   ⟸   XM_047433173
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047289131   ⟸   XM_047433175
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047289132   ⟸   XM_047433176
- Peptide Label: isoform X6
- UniProtKB: A0A2R8Y7J6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054234972   ⟸   XM_054378997
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054234970   ⟸   XM_054378995
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054234971   ⟸   XM_054378996
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054234973   ⟸   XM_054378998
- Peptide Label: isoform X6
- UniProtKB: A0A2R8Y7J6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y2V0-F1-model_v2 AlphaFold Q9Y2V0 1-281 view protein structure

Promoters
RGD ID:7229023
Promoter ID:EPDNEW_H20257
Type:multiple initiation site
Name:C15orf41_2
Description:chromosome 15 open reading frame 41
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20256  EPDNEW_H20258  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,594,877 - 36,594,937EPDNEW
RGD ID:7229027
Promoter ID:EPDNEW_H20258
Type:initiation region
Name:C15orf41_1
Description:chromosome 15 open reading frame 41
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20256  EPDNEW_H20257  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381536,613,611 - 36,613,671EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:26929 AgrOrtholog
COSMIC CDIN1 COSMIC
Ensembl Genes ENSG00000186073 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000338183.8 UniProtKB/Swiss-Prot
  ENST00000437989 ENTREZGENE
  ENST00000437989.6 UniProtKB/Swiss-Prot
  ENST00000562489.1 UniProtKB/TrEMBL
  ENST00000562877 ENTREZGENE
  ENST00000562877.5 UniProtKB/Swiss-Prot
  ENST00000564586.5 UniProtKB/TrEMBL
  ENST00000566621 ENTREZGENE
  ENST00000566621.6 UniProtKB/Swiss-Prot
  ENST00000566807.5 UniProtKB/TrEMBL
  ENST00000567389 ENTREZGENE
  ENST00000567389.5 UniProtKB/Swiss-Prot
  ENST00000569302 ENTREZGENE
  ENST00000569302.6 UniProtKB/TrEMBL
  ENST00000570265 ENTREZGENE
  ENST00000570265.6 UniProtKB/TrEMBL
  ENST00000642817.1 UniProtKB/TrEMBL
  ENST00000643612 ENTREZGENE
  ENST00000643612.1 UniProtKB/TrEMBL
  ENST00000643822.1 UniProtKB/TrEMBL
  ENST00000646533 ENTREZGENE
  ENST00000646533.1 UniProtKB/TrEMBL
  ENST00000646657.1 UniProtKB/TrEMBL
GTEx ENSG00000186073 GTEx
HGNC ID HGNC:26929 ENTREZGENE
Human Proteome Map CDIN1 Human Proteome Map
InterPro C15orf41 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report hsa:84529 UniProtKB/Swiss-Prot
NCBI Gene 84529 ENTREZGENE
OMIM 615626 OMIM
PANTHER CDAN1-INTERACTING NUCLEASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31661 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TPD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA166352388 PharmGKB
UniProt A0A2R8Y7J6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8YD89 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8YDB2_HUMAN UniProtKB/TrEMBL
  A0A2R8YEF3_HUMAN UniProtKB/TrEMBL
  A0A2R8YEW7_HUMAN UniProtKB/TrEMBL
  A0A2R8YEZ2 ENTREZGENE, UniProtKB/TrEMBL
  B2RD87 ENTREZGENE
  CO041_HUMAN UniProtKB/Swiss-Prot
  H3BMD3_HUMAN UniProtKB/TrEMBL
  H3BNF9_HUMAN UniProtKB/TrEMBL
  H3BS01 ENTREZGENE, UniProtKB/TrEMBL
  H3BTL3_HUMAN UniProtKB/TrEMBL
  Q9Y2V0 ENTREZGENE
UniProt Secondary B2RD87 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-20 CDIN1  CDAN1 interacting nuclease 1  C15orf41  chromosome 15 open reading frame 41  Symbol and/or name change 19259463 PROVISIONAL