HELQ (helicase, POLQ like) - Rat Genome Database

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Gene: HELQ (helicase, POLQ like) Homo sapiens
Analyze
Symbol: HELQ
Name: helicase, POLQ like
RGD ID: 1605893
HGNC Page HGNC:18536
Description: Enables single-stranded 3'-5' DNA helicase activity. Involved in DNA double-strand break processing involved in repair via single-strand annealing; double-strand break repair via alternative nonhomologous end joining; and double-strand break repair via synthesis-dependent strand annealing. Is active in nucleus and site of DNA damage.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA helicase HEL308; HEL308; helicase POLQ-like; helicase, POLQ-like; MGC20604; mus308-like helicase; POLQ-like helicase
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38483,407,346 - 83,455,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl483,407,343 - 83,455,855 (-)EnsemblGRCh38hg38GRCh38
GRCh37484,328,499 - 84,377,036 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36484,547,523 - 84,596,049 (-)NCBINCBI36Build 36hg18NCBI36
Celera481,618,948 - 81,667,478 (-)NCBICelera
Cytogenetic Map4q21.23NCBI
HuRef480,071,300 - 80,119,800 (-)NCBIHuRef
CHM1_1484,305,076 - 84,353,599 (-)NCBICHM1_1
T2T-CHM13v2.0486,737,435 - 86,785,950 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HELQHumanchromosome 4q21 deletion syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 4q21 deletion syndromeClinVar 

1 to 20 of 64 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HELQHuman2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISOHelq (Mus musculus)6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820
HELQHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISOHelq (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of HELQ mRNACTDPMID:21570461
HELQHuman2-palmitoylglycerol increases expressionEXP 64804642-palmitoylglycerol results in increased expression of HELQ mRNACTDPMID:37199045
HELQHuman3,4-methylenedioxymethamphetamine increases expressionISOHelq (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of HELQ mRNACTDPMID:20188158
HELQHuman3-isobutyl-1-methyl-7H-xanthine multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of HELQ mRNACTDPMID:28628672
HELQHumanacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of HELQ mRNACTDPMID:32763439
HELQHumanaflatoxin B1 increases expressionISOHelq (Mus musculus)6480464Aflatoxin B1 results in increased expression of HELQ mRNACTDPMID:19770486
HELQHumanamphetamine decreases expressionISOHelq (Rattus norvegicus)6480464Amphetamine results in decreased expression of HELQ mRNACTDPMID:30779732
HELQHumanbenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of HELQ mRNACTDPMID:22316170
HELQHumanbisphenol A affects expressionISOHelq (Rattus norvegicus)6480464bisphenol A affects the expression of HELQ mRNACTDPMID:25181051
HELQHumanbisphenol A increases expressionISOHelq (Mus musculus)6480464bisphenol A results in increased expression of HELQ mRNACTDPMID:33221593
HELQHumanbisphenol A affects splicingISOHelq (Mus musculus)6480464bisphenol A affects the splicing of HELQ mRNACTDPMID:37894381
HELQHumanbisphenol A increases methylationISOHelq (Rattus norvegicus)6480464bisphenol A results in increased methylation of HELQ geneCTDPMID:28505145
HELQHumanbisphenol A decreases methylationISOHelq (Mus musculus)6480464bisphenol A results in decreased methylation of HELQ promoterCTDPMID:27312807
HELQHumanbisphenol A increases expressionISOHelq (Rattus norvegicus)6480464bisphenol A results in increased expression of HELQ mRNACTDPMID:30816183 and PMID:32528016
HELQHumanBisphenol A diglycidyl ether affects splicingISOHelq (Mus musculus)6480464bisphenol A diglycidyl ether affects the splicing of HELQ mRNACTDPMID:36464114
HELQHumanbisphenol AF affects splicingISOHelq (Mus musculus)6480464bisphenol AF affects the splicing of HELQ mRNACTDPMID:36464114
HELQHumanbisphenol F multiple interactionsEXP 6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of HELQ mRNACTDPMID:28628672
HELQHumanchlorpyrifos decreases expressionISOHelq (Mus musculus)6480464Chlorpyrifos results in decreased expression of HELQ mRNACTDPMID:37019170
HELQHumancholine multiple interactionsISOHelq (Mus musculus)6480464[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased methylation of HELQ geneCTDPMID:20938992

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Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HELQHumanchromosome located_inIEAUniProtKB-KW:KW-0158150520179 UniProtGO_REF:0000043
HELQHumanchromosome located_inIEAUniProtKB-SubCell:SL-0468150520179 UniProtGO_REF:0000044
HELQHumannucleus is_active_inIDA 150520179 PMID:34937945UniProtPMID:34937945
HELQHumannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
HELQHumannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
HELQHumansite of DNA damage is_active_inIDA 150520179 PMID:34937945UniProtPMID:34937945

Molecular Function
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HELQHumanATP binding enablesIEAInterPro:IPR011545150520179 InterProGO_REF:0000002
HELQHumanATP binding enablesIEAUniProtKB-KW:KW-0067150520179 UniProtGO_REF:0000043
HELQHumanATP hydrolysis activity enablesIEARHEA:13065150520179 RHEAGO_REF:0000116
HELQHumanDNA binding enablesIEAUniProtKB-KW:KW-0238150520179 UniProtGO_REF:0000043
HELQHumanhelicase activity enablesIEAUniProtKB-KW:KW-0347150520179 UniProtGO_REF:0000043
HELQHumanhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
HELQHumannucleic acid binding enablesIEAInterPro:IPR011545150520179 InterProGO_REF:0000002
HELQHumannucleotide binding enablesIEAUniProtKB-KW:KW-0547150520179 UniProtGO_REF:0000043
HELQHumanprotein binding enablesIPIUniProtKB:O43502150520179 PMID:24005329IntActPMID:24005329
HELQHumansingle-stranded 3'-5' DNA helicase activity enablesIDA 150520179 PMID:11751861 more ...FlyBasePMID:11751861 more ...
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#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889549   PMID:11751861   PMID:12477932   PMID:12794064   PMID:16344560   PMID:18029348   PMID:18270339   PMID:19995904   PMID:20379614   PMID:20800603   PMID:21398521   PMID:21437268  
PMID:21873635   PMID:22267201   PMID:22939629   PMID:24005329   PMID:24005565   PMID:24658182   PMID:24981860   PMID:26190809   PMID:26351136   PMID:26871637   PMID:28000895   PMID:28738244  
PMID:29572031   PMID:29883609   PMID:30686591   PMID:33485349   PMID:34316696   PMID:34672775   PMID:34937945   PMID:35559673   PMID:36718939   PMID:37777152   PMID:37897354   PMID:38540391  
PMID:38720471  



HELQ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38483,407,346 - 83,455,883 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl483,407,343 - 83,455,855 (-)EnsemblGRCh38hg38GRCh38
GRCh37484,328,499 - 84,377,036 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36484,547,523 - 84,596,049 (-)NCBINCBI36Build 36hg18NCBI36
Celera481,618,948 - 81,667,478 (-)NCBICelera
Cytogenetic Map4q21.23NCBI
HuRef480,071,300 - 80,119,800 (-)NCBIHuRef
CHM1_1484,305,076 - 84,353,599 (-)NCBICHM1_1
T2T-CHM13v2.0486,737,435 - 86,785,950 (-)NCBIT2T-CHM13v2.0
Helq
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395100,910,010 - 100,946,529 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5100,910,011 - 100,946,464 (-)EnsemblGRCm39 Ensembl
GRCm385100,762,144 - 100,798,661 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5100,762,145 - 100,798,598 (-)EnsemblGRCm38mm10GRCm38
MGSCv375101,191,167 - 101,227,619 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365101,002,447 - 101,038,902 (-)NCBIMGSCv36mm8
Celera598,090,213 - 98,126,676 (-)NCBICelera
Cytogenetic Map5E4NCBI
cM Map548.52NCBI
Helq
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,122,978 - 9,167,310 (+)NCBIGRCr8
mRatBN7.2148,818,582 - 8,862,926 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl148,818,592 - 8,862,960 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,786,509 - 8,836,501 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01410,086,357 - 10,136,345 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,782,970 - 8,832,966 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01410,446,981 - 10,491,042 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1410,446,993 - 10,491,190 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01410,394,947 - 10,439,008 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41410,102,501 - 10,137,153 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera148,927,629 - 8,971,937 (+)NCBICelera
Cytogenetic Map14p22NCBI
Helq
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554746,281,231 - 6,322,615 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554746,280,955 - 6,322,702 (+)NCBIChiLan1.0ChiLan1.0
HELQ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2346,607,651 - 46,656,212 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1446,797,016 - 46,849,457 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0440,740,392 - 40,788,907 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1446,586,882 - 46,635,108 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl446,586,882 - 46,635,108 (+)Ensemblpanpan1.1panPan2
HELQ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1327,245,867 - 7,290,138 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl327,245,230 - 7,290,014 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3234,595,411 - 34,639,694 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0327,267,433 - 7,311,664 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1327,337,423 - 7,380,288 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0327,206,724 - 7,251,379 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03232,710,331 - 32,754,719 (+)NCBIUU_Cfam_GSD_1.0
Helq
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244052855,062,206 - 5,104,054 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367381,224,312 - 1,265,786 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367381,224,072 - 1,265,887 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HELQ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8135,026,315 - 135,061,043 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18135,026,117 - 135,061,051 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28144,322,634 - 144,357,373 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HELQ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1731,799,072 - 31,846,942 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl731,797,747 - 31,846,760 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603710,394,630 - 10,442,558 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Helq
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624900375,216 - 419,672 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624900375,081 - 419,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in HELQ
111 total Variants

1 to 10 of 157 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 4q21.1-21.23(chr4:75453111-84094295)x1 copy number loss See cases [RCV000050786] Chr4:75453111..84094295 [GRCh38]
Chr4:76378321..85015448 [GRCh37]
Chr4:76597345..85234472 [NCBI36]
Chr4:4q21.1-21.23
pathogenic
GRCh38/hg38 4q12-22.3(chr4:51831622-97505618)x3 copy number gain See cases [RCV000051772] Chr4:51831622..97505618 [GRCh38]
Chr4:52697788..98426769 [GRCh37]
Chr4:52392545..98645792 [NCBI36]
Chr4:4q12-22.3
pathogenic
GRCh38/hg38 4q13.2-21.23(chr4:67869564-85517308)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053294]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053294]|See cases [RCV000053294] Chr4:67869564..85517308 [GRCh38]
Chr4:68735282..86438461 [GRCh37]
Chr4:68417877..86657485 [NCBI36]
Chr4:4q13.2-21.23
pathogenic
GRCh38/hg38 4q13.3-22.1(chr4:74031395-90421127)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053296]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053296]|See cases [RCV000053296] Chr4:74031395..90421127 [GRCh38]
Chr4:74897112..91342278 [GRCh37]
Chr4:75115976..91561301 [NCBI36]
Chr4:4q13.3-22.1
pathogenic
GRCh38/hg38 4q21.21-22.1(chr4:79575748-92412449)x1 copy number loss See cases [RCV000053297] Chr4:79575748..92412449 [GRCh38]
Chr4:80496902..93333600 [GRCh37]
Chr4:80715926..93552623 [NCBI36]
Chr4:4q21.21-22.1
pathogenic
GRCh38/hg38 4q21.22-21.23(chr4:81733333-83448842)x1 copy number loss See cases [RCV000053299] Chr4:81733333..83448842 [GRCh38]
Chr4:82654487..84369995 [GRCh37]
Chr4:82873511..84589019 [NCBI36]
Chr4:4q21.22-21.23
pathogenic
GRCh38/hg38 4q21.22-21.23(chr4:81802008-83437114)x1 copy number loss See cases [RCV000053300] Chr4:81802008..83437114 [GRCh38]
Chr4:82723161..84358267 [GRCh37]
Chr4:82942185..84577291 [NCBI36]
Chr4:4q21.22-21.23
pathogenic
GRCh38/hg38 4q21.22-21.3(chr4:82248692-86778340)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053319]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053319]|See cases [RCV000053319] Chr4:82248692..86778340 [GRCh38]
Chr4:83169845..87699493 [GRCh37]
Chr4:83388869..87918517 [NCBI36]
Chr4:4q21.22-21.3
pathogenic
NM_133636.3(HELQ):c.25C>T (p.Arg9Cys) single nucleotide variant Malignant melanoma [RCV000061060] Chr4:83455669 [GRCh38]
Chr4:84376822 [GRCh37]
Chr4:84595846 [NCBI36]
Chr4:4q21.23
not provided
GRCh38/hg38 4q21.21-22.3(chr4:80879777-94809447)x1 copy number loss See cases [RCV000134977] Chr4:80879777..94809447 [GRCh38]
Chr4:81800931..95730598 [GRCh37]
Chr4:82019955..95949621 [NCBI36]
Chr4:4q21.21-22.3
pathogenic
1 to 10 of 157 rows

Predicted Target Of
Summary Value
Count of predictions:824
Count of miRNA genes:537
Interacting mature miRNAs:572
Transcripts:ENST00000295488, ENST00000440639, ENST00000508591, ENST00000510985, ENST00000512539, ENST00000515482
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407049046GWAS698022_Hage at menopause QTL GWAS698022 (human)2e-19age at menopause48345246983452470Human
597066960GWAS1163034_Hage at menopause QTL GWAS1163034 (human)4e-08age at menopause48344359883443599Human
597230241GWAS1326315_Hage at menopause QTL GWAS1326315 (human)6e-172age at menopause48344645283446453Human
597067406GWAS1163480_Hage at menarche QTL GWAS1163480 (human)7e-08age at menarche48345246983452470Human
597063743GWAS1159817_Hage at menopause QTL GWAS1159817 (human)9e-23age at menopause48345246983452470Human
597204546GWAS1300620_Hupper aerodigestive tract neoplasm QTL GWAS1300620 (human)0.000005upper aerodigestive tract neoplasm48343000083430001Human
597336401GWAS1432475_Hsevere acute respiratory syndrome, COVID-19 QTL GWAS1432475 (human)1e-13severe acute respiratory syndrome, COVID-1948341061583410616Human
407026905GWAS675881_Hupper aerodigestive tract neoplasm QTL GWAS675881 (human)1e-08upper aerodigestive tract neoplasm48345332783453328Human

D6S1576  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37629,008,444 - 29,008,832UniSTSGRCh37
GRCh37484,333,054 - 84,333,266UniSTSGRCh37
GRCh37636,541,695 - 36,541,910UniSTSGRCh37
Build 36636,649,673 - 36,649,888RGDNCBI36
Celera630,614,554 - 30,614,942UniSTS
Celera638,096,741 - 38,096,956RGD
Celera481,623,503 - 81,623,715UniSTS
Cytogenetic Map6p22.1UniSTS
HuRef628,815,847 - 28,816,235UniSTS
HuRef1950,789,361 - 50,789,946UniSTS
HuRef480,075,855 - 80,076,067UniSTS
HuRef636,260,597 - 36,260,812UniSTS
Marshfield Genetic Map650.75RGD
Genethon Genetic Map651.2UniSTS
TNG Radiation Hybrid Map619818.0UniSTS
GeneMap99-GB4 RH Map6134.05UniSTS
SHGC-36904  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37484,328,587 - 84,328,689UniSTSGRCh37
Build 36484,547,611 - 84,547,713RGDNCBI36
Celera481,619,036 - 81,619,138RGD
Cytogenetic Map4q21.23UniSTS
HuRef480,071,388 - 80,071,490UniSTS
TNG Radiation Hybrid Map450096.0UniSTS
Stanford-G3 RH Map44591.0UniSTS
NCBI RH Map41028.0UniSTS
GeneMap99-G3 RH Map44575.0UniSTS
D4S2520E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37484,328,622 - 84,328,708UniSTSGRCh37
Build 36484,547,646 - 84,547,732RGDNCBI36
Celera481,619,071 - 81,619,157RGD
Cytogenetic Map4q21.23UniSTS
HuRef480,071,423 - 80,071,509UniSTS
GeneMap99-GB4 RH Map4448.81UniSTS
NCBI RH Map4998.5UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4973 1726 2351 6 624 1951 465 2269 7306 6472 53 3734 1 852 1744 1617 174 1


1 to 29 of 29 rows
RefSeq Transcripts NM_001297755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001297756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001297757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001297758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001297759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_123737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA150438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC096768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF436845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI627810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK126255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK312725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL512702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC095473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC111502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM986846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK000270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK905810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB081240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 29 of 29 rows

Ensembl Acc Id: ENST00000295488   ⟹   ENSP00000295488
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl483,407,346 - 83,455,823 (-)Ensembl
Ensembl Acc Id: ENST00000440639
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl483,453,757 - 83,455,823 (-)Ensembl
Ensembl Acc Id: ENST00000508591   ⟹   ENSP00000424186
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl483,407,343 - 83,455,804 (-)Ensembl
Ensembl Acc Id: ENST00000510985   ⟹   ENSP00000424539
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl483,407,373 - 83,455,823 (-)Ensembl
Ensembl Acc Id: ENST00000512539
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl483,407,367 - 83,427,726 (-)Ensembl
Ensembl Acc Id: ENST00000515482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl483,453,720 - 83,455,855 (-)Ensembl
RefSeq Acc Id: NM_001297755   ⟹   NP_001284684
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38483,407,346 - 83,455,823 (-)NCBI
CHM1_1484,305,073 - 84,353,610 (-)NCBI
T2T-CHM13v2.0486,737,435 - 86,785,890 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001297756   ⟹   NP_001284685
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38483,407,346 - 83,455,823 (-)NCBI
CHM1_1484,305,073 - 84,353,610 (-)NCBI
T2T-CHM13v2.0486,737,435 - 86,785,890 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001297757   ⟹   NP_001284686
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38483,407,346 - 83,455,823 (-)NCBI
CHM1_1484,305,073 - 84,353,610 (-)NCBI
T2T-CHM13v2.0486,737,435 - 86,785,890 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001297758   ⟹   NP_001284687
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38483,451,866 - 83,455,823 (-)NCBI
CHM1_1484,349,593 - 84,353,610 (-)NCBI
T2T-CHM13v2.0486,781,933 - 86,785,890 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001297759   ⟹   NP_001284688
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38483,451,866 - 83,455,823 (-)NCBI
CHM1_1484,349,593 - 84,353,610 (-)NCBI
T2T-CHM13v2.0486,781,933 - 86,785,890 (-)NCBI
Sequence:
RefSeq Acc Id: NM_133636   ⟹   NP_598375
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38483,407,346 - 83,455,823 (-)NCBI
GRCh37484,328,496 - 84,377,162 (-)NCBI
Build 36484,547,523 - 84,596,049 (-)NCBI Archive
Celera481,618,948 - 81,667,478 (-)RGD
HuRef480,071,300 - 80,119,800 (-)RGD
CHM1_1484,305,073 - 84,353,610 (-)NCBI
T2T-CHM13v2.0486,737,435 - 86,785,890 (-)NCBI
Sequence:
RefSeq Acc Id: NR_123737
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38483,451,866 - 83,455,883 (-)NCBI
CHM1_1484,349,593 - 84,353,610 (-)NCBI
T2T-CHM13v2.0486,781,933 - 86,785,950 (-)NCBI
Sequence:
RefSeq Acc Id: NP_598375   ⟸   NM_133636
- Peptide Label: isoform 1
- UniProtKB: Q8TDG4 (UniProtKB/Swiss-Prot),   Q6ZTS4 (UniProtKB/Swiss-Prot),   Q6ZQX4 (UniProtKB/Swiss-Prot),   Q659B8 (UniProtKB/Swiss-Prot),   Q502W9 (UniProtKB/Swiss-Prot),   Q05DF9 (UniProtKB/Swiss-Prot),   Q96EX7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001284684   ⟸   NM_001297755
- Peptide Label: isoform 2
- UniProtKB: E3W980 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001284686   ⟸   NM_001297757
- Peptide Label: isoform 4
- Sequence:
RefSeq Acc Id: NP_001284685   ⟸   NM_001297756
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: NP_001284687   ⟸   NM_001297758
- Peptide Label: isoform 5
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-Q8TDG4-F1-model_v2 AlphaFold Q8TDG4 1-1101 view protein structure

RGD ID:6867888
Promoter ID:EPDNEW_H7109
Type:initiation region
Name:HELQ_1
Description:helicase, POLQ-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H7112  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38483,455,823 - 83,455,883EPDNEW
RGD ID:6802015
Promoter ID:HG_KWN:48631
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000252810,   OTTHUMT00000252820,   UC003HOL.2,   UC003HON.1,   UC003HOO.1,   UC003HOP.1,   UC003HOQ.1,   UC010IKB.1,   UC010IKC.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36484,595,731 - 84,596,231 (-)MPROMDB


1 to 40 of 54 rows
Database
Acc Id
Source(s)
COSMIC HELQ COSMIC
Ensembl Genes ENSG00000163312 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000295488 ENTREZGENE
  ENST00000295488.8 UniProtKB/Swiss-Prot
  ENST00000510985 ENTREZGENE
Gene3D-CATH 1.10.3380.20 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
  5' to 3' exonuclease, C-terminal subdomain UniProtKB/Swiss-Prot
GTEx ENSG00000163312 GTEx
HGNC ID HGNC:18536 ENTREZGENE
Human Proteome Map HELQ Human Proteome Map
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/Swiss-Prot
  Hel308/SKI2 UniProtKB/Swiss-Prot
  Helicase_ATP-bd UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  HTH_61 UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  POLQ-like_helical UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report hsa:113510 UniProtKB/Swiss-Prot
NCBI Gene 113510 ENTREZGENE
OMIM 606769 OMIM
PANTHER DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED UniProtKB/Swiss-Prot
  HELICASE POLQ-LIKE UniProtKB/Swiss-Prot
Pfam DEAD UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  HTH_61 UniProtKB/Swiss-Prot
  POLQ_helical UniProtKB/Swiss-Prot
PharmGKB PA164720529 PharmGKB
PROSITE HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot
  HELICASE_CTER UniProtKB/Swiss-Prot
SMART DEXDc UniProtKB/Swiss-Prot
  HELICc UniProtKB/Swiss-Prot
Superfamily-SCOP Sec63 N-terminal domain-like UniProtKB/Swiss-Prot
  SSF46785 UniProtKB/Swiss-Prot
  SSF52540 UniProtKB/Swiss-Prot
UniProt A0A0S2Z5V3_HUMAN UniProtKB/TrEMBL
  A0A0S2Z5X5_HUMAN UniProtKB/TrEMBL
  E3W980 ENTREZGENE, UniProtKB/TrEMBL
  E3W982_HUMAN UniProtKB/TrEMBL
1 to 40 of 54 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-20 HELQ  helicase, POLQ like  HELQ  helicase, POLQ-like  Symbol and/or name change 5135510 APPROVED