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Gene: RFTN1 (raftlin, lipid raft linker 1) Homo sapiens

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Symbol:

RFTN1

Name:

raftlin, lipid raft linker 1

RGD ID:

1604380

HGNC Page

HGNC:30278

Description:

Enables double-stranded RNA binding activity. Involved in B cell receptor signaling pathway; membrane raft assembly; and positive regulation of growth rate. Acts upstream of or within dsRNA transport; response to exogenous dsRNA; and toll-like receptor 3 signaling pathway. Located in endosome; membrane raft; and plasma membrane. Part of protein-containing complex. Biomarker of glaucoma.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cell migration-inducing gene 2 protein; FLJ23866; KIAA0084; MGC141678; MGC44480; MIG2; PIB10; PIG9; proliferation-inducing protein 10; proliferation-inducing protein 9; raft-linking protein; raftlin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Rftn1 (raftlin lipid raft linker 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rftn1 (raftlin lipid raft linker 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Rftn1 (raftlin, lipid raft linker 1)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	RFTN1 (raftlin, lipid raft linker 1)	NCBI	Ortholog
Canis lupus familiaris (dog):	RFTN1 (raftlin, lipid raft linker 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rftn1 (raftlin, lipid raft linker 1)	NCBI	Ortholog
Sus scrofa (pig):	RFTN1 (raftlin, lipid raft linker 1)	HGNC	EggNOG, Ensembl, NCBI, OrthoDB, Panther
Chlorocebus sabaeus (green monkey):	RFTN1 (raftlin, lipid raft linker 1)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Rftn1 (raftlin, lipid raft linker 1)	NCBI	Ortholog
Alliance orthologs ³
Mus musculus (house mouse):	Rftn1 (raftlin lipid raft linker 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Rftn1 (raftlin lipid raft linker 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rftn1a (raftlin, lipid raft linker 1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	rftn1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus laevis (African clawed frog):	rftn1.L	Alliance	DIOPT (Xenbase)

Related Pseudogenes:

RFTN1P1

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	16,315,845 - 16,513,699 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	16,313,574 - 16,514,026 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	16,357,352 - 16,555,206 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	16,332,356 - 16,530,226 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	16,296,470 - 16,494,283 (-)	NCBI		Celera
Cytogenetic Map	3	p24.3	NCBI
HuRef	3	16,290,978 - 16,488,996 (-)	NCBI		HuRef
CHM1_1	3	16,308,420 - 16,506,893 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	16,317,057 - 16,514,836 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RFTN1	Human	glaucoma		IEP		155630605	mRNA:increased expression:optic nerve head (human)	RGD
RFTN1	Human	glaucoma		ISO	Rftn1 (Rattus norvegicus)	155630605	mRNA:increased expression:optic nerve head (rat)	RGD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RFTN1	Human	3p deletion syndrome		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: 3p- syndrome	ClinVar	PMID:31690835

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RFTN1	Human	(-)-demecolcine	increases expression	EXP		6480464	Demecolcine results in increased expression of RFTN1 mRNA	CTD	PMID:23649840
RFTN1	Human	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of RFTN1 mRNA	CTD	PMID:19619570
RFTN1	Human	17beta-estradiol	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of RFTN1 mRNA	CTD	PMID:32741896
RFTN1	Human	17beta-estradiol	multiple interactions	EXP		6480464	[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of RFTN1 mRNA and [Estradiol co-treated with TGFB1 protein] results in increased expression of RFTN1 mRNA	CTD	PMID:19619570 and PMID:30165855
RFTN1	Human	17beta-estradiol 3-benzoate	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of RFTN1 mRNA	CTD	PMID:32741896
RFTN1	Human	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	EXP		6480464	[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of RFTN1 mRNA and Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to RFTN1 gene]	CTD	PMID:19619570 and PMID:28681081
RFTN1	Human	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin results in increased expression of RFTN1 mRNA	CTD	PMID:33387578
RFTN1	Human	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Rftn1 (Rattus norvegicus)	6480464	Tetrachlorodibenzodioxin affects the expression of RFTN1 mRNA	CTD	PMID:34747641
RFTN1	Human	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Rftn1 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of RFTN1 mRNA	CTD	PMID:21570461
RFTN1	Human	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of RFTN1 mRNA	CTD	PMID:19619570
RFTN1	Human	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of RFTN1 mRNA	CTD	PMID:20106945
RFTN1	Human	2,3,7,8-Tetrachlorodibenzofuran	decreases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	2 more ...	CTD	PMID:32109520
RFTN1	Human	2,4,6-tribromophenol	increases expression	EXP		6480464	2 more ...	CTD	PMID:31675489
RFTN1	Human	3,3',5,5'-tetrabromobisphenol A	increases expression	EXP		6480464	tetrabromobisphenol A results in increased expression of RFTN1 protein	CTD	PMID:31675489
RFTN1	Human	4,4'-sulfonyldiphenol	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of RFTN1 mRNA	CTD	PMID:36041667
RFTN1	Human	4,4'-sulfonyldiphenol	increases expression	EXP		6480464	bisphenol S results in increased expression of RFTN1 protein	CTD	PMID:34186270
RFTN1	Human	6-propyl-2-thiouracil	increases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	Propylthiouracil results in increased expression of RFTN1 mRNA	CTD	PMID:24780913
RFTN1	Human	acetamide	increases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	acetamide results in increased expression of RFTN1 mRNA	CTD	PMID:31881176
RFTN1	Human	aflatoxin B1	decreases expression	EXP		6480464	Aflatoxin B1 results in decreased expression of RFTN1 mRNA	CTD	PMID:22100608
RFTN1	Human	aflatoxin B1	decreases methylation	EXP		6480464	Aflatoxin B1 results in decreased methylation of RFTN1 gene	CTD	PMID:27153756
RFTN1	Human	all-trans-retinoic acid	increases expression	EXP		6480464	Tretinoin results in increased expression of RFTN1 mRNA	CTD	PMID:21934132
RFTN1	Human	all-trans-retinoic acid	decreases expression	EXP		6480464	Tretinoin results in decreased expression of RFTN1 mRNA	CTD	PMID:23724009 and PMID:33167477
RFTN1	Human	amphetamine	decreases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	Amphetamine results in decreased expression of RFTN1 mRNA	CTD	PMID:30779732
RFTN1	Human	arsane	multiple interactions	EXP		6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of RFTN1 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of RFTN1 mRNA	CTD	PMID:32525701 and PMID:39836092
RFTN1	Human	arsenic atom	multiple interactions	EXP		6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of RFTN1 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of RFTN1 mRNA	CTD	PMID:32525701 and PMID:39836092
RFTN1	Human	benzo[a]pyrene	increases methylation	EXP		6480464	Benzo(a)pyrene results in increased methylation of RFTN1 5' UTR	CTD	PMID:27901495
RFTN1	Human	benzo[a]pyrene	decreases methylation	ISO	Rftn1 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased methylation of RFTN1 intron	CTD	PMID:27901495
RFTN1	Human	benzo[e]pyrene	increases methylation	EXP		6480464	benzo(e)pyrene results in increased methylation of RFTN1 intron	CTD	PMID:30157460
RFTN1	Human	bisphenol A	increases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of RFTN1 mRNA	CTD	PMID:25181051
RFTN1	Human	bisphenol A	increases expression	ISO	Rftn1 (Mus musculus)	6480464	bisphenol A results in increased expression of RFTN1 mRNA	CTD	PMID:32156529
RFTN1	Human	bisphenol A	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of RFTN1 mRNA	CTD	PMID:36041667
RFTN1	Human	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of RFTN1 protein	CTD	PMID:34186270
RFTN1	Human	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of RFTN1 protein	CTD	PMID:31675489
RFTN1	Human	bisphenol A	decreases methylation	EXP		6480464	bisphenol A results in decreased methylation of RFTN1 gene	CTD	PMID:31601247
RFTN1	Human	bisphenol A	decreases expression	ISO	Rftn1 (Mus musculus)	6480464	bisphenol A results in decreased expression of RFTN1 mRNA	CTD	PMID:30951980
RFTN1	Human	bisphenol A	decreases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	bisphenol A results in decreased expression of RFTN1 mRNA	CTD	PMID:30816183 more ...
RFTN1	Human	bisphenol A	increases methylation	ISO	Rftn1 (Rattus norvegicus)	6480464	bisphenol A results in increased methylation of RFTN1 gene	CTD	PMID:28505145
RFTN1	Human	bisphenol AF	increases expression	EXP		6480464	bisphenol AF results in increased expression of RFTN1 protein	CTD	PMID:34186270
RFTN1	Human	Bisphenol B	increases expression	EXP		6480464	bisphenol B results in increased expression of RFTN1 protein	CTD	PMID:34186270
RFTN1	Human	bisphenol F	increases expression	EXP		6480464	bisphenol F results in increased expression of RFTN1 protein	CTD	PMID:34186270
RFTN1	Human	bisphenol F	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of RFTN1 mRNA	CTD	PMID:36041667
RFTN1	Human	butan-1-ol	multiple interactions	EXP		6480464	[[Gasoline co-treated with 1-Butanol] results in increased abundance of [Particulate Matter co-treated with Polycyclic Aromatic Hydrocarbons]] which results in decreased expression of RFTN1 mRNA	CTD	PMID:29432896
RFTN1	Human	C60 fullerene	decreases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	fullerene C60 results in decreased expression of RFTN1 mRNA	CTD	PMID:19167457
RFTN1	Human	cantharidin	decreases expression	ISO	Rftn1 (Mus musculus)	6480464	Cantharidin results in decreased expression of RFTN1 mRNA	CTD	PMID:36907384
RFTN1	Human	carbamazepine	affects expression	EXP		6480464	Carbamazepine affects the expression of RFTN1 mRNA	CTD	PMID:25979313
RFTN1	Human	CGP 52608	multiple interactions	EXP		6480464	CGP 52608 promotes the reaction [RORA protein binds to RFTN1 gene]	CTD	PMID:28238834
RFTN1	Human	chloroethene	increases expression	ISO	Rftn1 (Mus musculus)	6480464	Vinyl Chloride results in increased expression of RFTN1 mRNA	CTD	PMID:18579281
RFTN1	Human	cisplatin	decreases expression	EXP		6480464	Cisplatin results in decreased expression of RFTN1 mRNA	CTD	PMID:19561079
RFTN1	Human	cisplatin	multiple interactions	EXP		6480464	[Cisplatin co-treated with jinfukang] results in decreased expression of RFTN1 mRNA	CTD	PMID:27392435
RFTN1	Human	cobalt dichloride	decreases expression	EXP		6480464	cobaltous chloride results in decreased expression of RFTN1 mRNA	CTD	PMID:19320972
RFTN1	Human	copper atom	multiple interactions	EXP		6480464	[Disulfiram binds to Copper] which results in increased expression of RFTN1 mRNA	CTD	PMID:24690739
RFTN1	Human	copper(0)	multiple interactions	EXP		6480464	[Disulfiram binds to Copper] which results in increased expression of RFTN1 mRNA	CTD	PMID:24690739
RFTN1	Human	copper(II) chloride	increases expression	EXP		6480464	cupric chloride results in increased expression of RFTN1 mRNA	CTD	PMID:38568856
RFTN1	Human	coumestrol	multiple interactions	EXP		6480464	[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in decreased expression of RFTN1 mRNA	CTD	PMID:19167446
RFTN1	Human	coumestrol	decreases expression	EXP		6480464	Coumestrol results in decreased expression of RFTN1 mRNA	CTD	PMID:19167446
RFTN1	Human	crocidolite asbestos	decreases expression	ISO	Rftn1 (Mus musculus)	6480464	Asbestos and Crocidolite results in decreased expression of RFTN1 mRNA	CTD	PMID:29279043
RFTN1	Human	Cuprizon	increases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	Cuprizone results in increased expression of RFTN1 mRNA	CTD	PMID:26577399
RFTN1	Human	cyclosporin A	decreases expression	EXP		6480464	Cyclosporine results in decreased expression of RFTN1 mRNA	CTD	PMID:20106945
RFTN1	Human	DDT	decreases methylation	ISO	Rftn1 (Rattus norvegicus)	6480464	DDT results in decreased methylation of RFTN1 gene	CTD	PMID:30207508
RFTN1	Human	Dibutyl phosphate	affects expression	EXP		6480464	di-n-butylphosphoric acid affects the expression of RFTN1 mRNA	CTD	PMID:37042841
RFTN1	Human	disulfiram	multiple interactions	EXP		6480464	[Disulfiram binds to Copper] which results in increased expression of RFTN1 mRNA	CTD	PMID:24690739
RFTN1	Human	dorsomorphin	multiple interactions	EXP		6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
RFTN1	Human	doxorubicin	affects response to substance	EXP		6480464	RFTN1 protein affects the susceptibility to Doxorubicin	CTD	PMID:16217747
RFTN1	Human	elemental selenium	increases expression	EXP		6480464	Selenium results in increased expression of RFTN1 mRNA	CTD	PMID:19244175
RFTN1	Human	Enterolactone	multiple interactions	EXP		6480464	[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in decreased expression of RFTN1 mRNA	CTD	PMID:19167446
RFTN1	Human	fonofos	increases methylation	EXP		6480464	Fonofos results in increased methylation of RFTN1 promoter	CTD	PMID:22847954
RFTN1	Human	formaldehyde	increases expression	EXP		6480464	Formaldehyde results in increased expression of RFTN1 mRNA	CTD	PMID:23649840
RFTN1	Human	FR900359	decreases phosphorylation	EXP		6480464	FR900359 results in decreased phosphorylation of RFTN1 protein	CTD	PMID:37730182
RFTN1	Human	gentamycin	increases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	Gentamicins results in increased expression of RFTN1 mRNA	CTD	PMID:22061828
RFTN1	Human	glyphosate	increases expression	ISO	Rftn1 (Mus musculus)	6480464	Glyphosate results in increased expression of RFTN1 mRNA	CTD	PMID:35897073
RFTN1	Human	hydrogen peroxide	multiple interactions	EXP		6480464	[Hydrogen Peroxide co-treated with Theophylline] results in decreased expression of RFTN1 protein	CTD	PMID:18951874
RFTN1	Human	hydrogen peroxide	increases expression	EXP		6480464	Hydrogen Peroxide results in increased expression of RFTN1 mRNA	CTD	PMID:18951874
RFTN1	Human	hydroquinone	increases expression	EXP		6480464	hydroquinone results in increased expression of RFTN1 mRNA	CTD	PMID:31256213
RFTN1	Human	inulin	multiple interactions	ISO	Rftn1 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of RFTN1 mRNA	CTD	PMID:36331819
RFTN1	Human	ivermectin	decreases expression	EXP		6480464	Ivermectin results in decreased expression of RFTN1 protein	CTD	PMID:32959892
RFTN1	Human	lead(0)	affects expression	EXP		6480464	Lead affects the expression of RFTN1 mRNA	CTD	PMID:28903495
RFTN1	Human	lipopolysaccharide	multiple interactions	EXP		6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of RFTN1 mRNA	CTD	PMID:35811015
RFTN1	Human	lipopolysaccharide	increases expression	EXP		6480464	Lipopolysaccharides results in increased expression of RFTN1 mRNA	CTD	PMID:35811015
RFTN1	Human	methapyrilene	increases methylation	EXP		6480464	Methapyrilene results in increased methylation of RFTN1 intron	CTD	PMID:30157460
RFTN1	Human	methotrexate	increases expression	EXP		6480464	Methotrexate results in increased expression of RFTN1 mRNA	CTD	PMID:24449571
RFTN1	Human	methoxychlor	affects methylation	ISO	Rftn1 (Rattus norvegicus)	6480464	Methoxychlor affects the methylation of RFTN1 gene	CTD	PMID:35440735
RFTN1	Human	methylmercury chloride	increases expression	EXP		6480464	methylmercuric chloride results in increased expression of RFTN1 mRNA	CTD	PMID:28001369
RFTN1	Human	N,N-diethyl-m-toluamide	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[Permethrin co-treated with DEET] results in decreased methylation of RFTN1 gene	CTD	PMID:33148267
RFTN1	Human	nitrates	multiple interactions	ISO	Rftn1 (Mus musculus)	6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of RFTN1 mRNA	CTD	PMID:35964746
RFTN1	Human	O-methyleugenol	decreases expression	EXP		6480464	methyleugenol results in decreased expression of RFTN1 mRNA	CTD	PMID:32234424
RFTN1	Human	oxaliplatin	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of RFTN1 mRNA	CTD	PMID:25729387
RFTN1	Human	ozone	multiple interactions	ISO	Rftn1 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of RFTN1 mRNA more ...	CTD	PMID:27106289 and PMID:34911549
RFTN1	Human	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of RFTN1 mRNA	CTD	PMID:21420995
RFTN1	Human	parathion	increases methylation	EXP		6480464	Parathion results in increased methylation of RFTN1 promoter	CTD	PMID:22847954
RFTN1	Human	perfluorohexanesulfonic acid	decreases expression	ISO	Rftn1 (Mus musculus)	6480464	perfluorohexanesulfonic acid results in decreased expression of RFTN1 mRNA	CTD	PMID:37995155
RFTN1	Human	perfluorononanoic acid	decreases expression	EXP		6480464	perfluoro-n-nonanoic acid results in decreased expression of RFTN1 mRNA	CTD	PMID:32588087
RFTN1	Human	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Rftn1 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of RFTN1 mRNA	CTD	PMID:36331819
RFTN1	Human	permethrin	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[Permethrin co-treated with DEET] results in decreased methylation of RFTN1 gene	CTD	PMID:33148267
RFTN1	Human	phenylmercury acetate	multiple interactions	EXP		6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RFTN1 mRNA	CTD	PMID:27188386
RFTN1	Human	raloxifene	multiple interactions	EXP		6480464	[Raloxifene Hydrochloride co-treated with ESR2 protein] results in decreased expression of RFTN1 mRNA	CTD	PMID:19059307
RFTN1	Human	resveratrol	increases expression	EXP		6480464	resveratrol results in increased expression of RFTN1 mRNA	CTD	PMID:25888808
RFTN1	Human	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	EXP		6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of RFTN1 mRNA	CTD	PMID:35811015
RFTN1	Human	SB 431542	multiple interactions	EXP		6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
RFTN1	Human	selenium atom	increases expression	EXP		6480464	Selenium results in increased expression of RFTN1 mRNA	CTD	PMID:19244175
RFTN1	Human	sodium arsenate	multiple interactions	EXP		6480464	[sodium arsenate results in increased abundance of Arsenic] which results in increased expression of RFTN1 mRNA	CTD	PMID:32525701
RFTN1	Human	sodium arsenite	increases expression	EXP		6480464	sodium arsenite results in increased expression of RFTN1 mRNA	CTD	PMID:38568856
RFTN1	Human	sodium arsenite	multiple interactions	EXP		6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of RFTN1 mRNA	CTD	PMID:39836092
RFTN1	Human	sodium arsenite	increases expression	ISO	Rftn1 (Mus musculus)	6480464	sodium arsenite results in increased expression of RFTN1 mRNA	CTD	PMID:37682722
RFTN1	Human	sunitinib	increases expression	EXP		6480464	Sunitinib results in increased expression of RFTN1 mRNA	CTD	PMID:31533062
RFTN1	Human	tamoxifen	multiple interactions	EXP		6480464	[Tamoxifen co-treated with ESR2 protein] results in decreased expression of RFTN1 mRNA	CTD	PMID:19059307
RFTN1	Human	tamoxifen	affects expression	EXP		6480464	Tamoxifen affects the expression of RFTN1 mRNA	CTD	PMID:14699072
RFTN1	Human	temozolomide	decreases expression	EXP		6480464	Temozolomide results in decreased expression of RFTN1 mRNA	CTD	PMID:31758290
RFTN1	Human	terbufos	increases methylation	EXP		6480464	terbufos results in increased methylation of RFTN1 promoter	CTD	PMID:22847954
RFTN1	Human	testosterone	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of RFTN1 mRNA	CTD	PMID:32741896
RFTN1	Human	tetrachloromethane	affects expression	ISO	Rftn1 (Mus musculus)	6480464	Carbon Tetrachloride affects the expression of RFTN1 mRNA	CTD	PMID:17484886
RFTN1	Human	thapsigargin	decreases expression	EXP		6480464	Thapsigargin results in decreased expression of RFTN1 mRNA	CTD	PMID:22378314
RFTN1	Human	theophylline	multiple interactions	EXP		6480464	[Hydrogen Peroxide co-treated with Theophylline] results in decreased expression of RFTN1 protein	CTD	PMID:18951874
RFTN1	Human	thioacetamide	increases expression	ISO	Rftn1 (Rattus norvegicus)	6480464	Thioacetamide results in increased expression of RFTN1 mRNA	CTD	PMID:34492290
RFTN1	Human	thiram	increases expression	EXP		6480464	Thiram results in increased expression of RFTN1 mRNA	CTD	PMID:38568856
RFTN1	Human	titanium dioxide	decreases methylation	ISO	Rftn1 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of RFTN1 gene	CTD	PMID:35295148
RFTN1	Human	topotecan	multiple interactions	ISO	Rftn1 (Rattus norvegicus)	6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of RFTN1 mRNA	CTD	PMID:25729387
RFTN1	Human	topotecan	affects response to substance	EXP		6480464	RFTN1 protein affects the susceptibility to Topotecan	CTD	PMID:16217747
RFTN1	Human	trichostatin A	increases expression	EXP		6480464	trichostatin A results in increased expression of RFTN1 mRNA	CTD	PMID:24935251
RFTN1	Human	trichostatin A	decreases expression	EXP		6480464	trichostatin A results in decreased expression of RFTN1 mRNA	CTD	PMID:24935251
RFTN1	Human	triphenyl phosphate	affects expression	EXP		6480464	triphenyl phosphate affects the expression of RFTN1 mRNA	CTD	PMID:37042841
RFTN1	Human	troglitazone	decreases expression	ISO	Rftn1 (Mus musculus)	6480464	troglitazone results in decreased expression of RFTN1 mRNA	CTD	PMID:28973697
RFTN1	Human	urethane	decreases expression	EXP		6480464	Urethane results in decreased expression of RFTN1 mRNA	CTD	PMID:28818685
RFTN1	Human	valproic acid	decreases methylation	EXP		6480464	Valproic Acid results in decreased methylation of RFTN1 gene	CTD	PMID:29154799
RFTN1	Human	valproic acid	decreases expression	EXP		6480464	Valproic Acid results in decreased expression of RFTN1 mRNA	CTD	PMID:19101580 more ...
RFTN1	Human	valproic acid	affects expression	EXP		6480464	Valproic Acid affects the expression of RFTN1 mRNA	CTD	PMID:25979313
RFTN1	Human	valproic acid	multiple interactions	EXP		6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of RFTN1 mRNA	CTD	PMID:27188386
RFTN1	Human	valproic acid	increases expression	EXP		6480464	Valproic Acid results in increased expression of RFTN1 mRNA	CTD	PMID:23179753 more ...
RFTN1	Human	vincristine	increases expression	EXP		6480464	Vincristine results in increased expression of RFTN1 mRNA	CTD	PMID:23649840
RFTN1	Human	vitamin E	increases expression	EXP		6480464	Vitamin E results in increased expression of RFTN1 mRNA	CTD	PMID:19244175

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RFTN1	Human	B cell receptor signaling pathway	involved_in	IMP		150520179	PMID:12805216	UniProt	PMID:12805216
RFTN1	Human	dsRNA transport	acts_upstream_of_or_within	IMP		150520179	PMID:21266579	MGI	PMID:21266579
RFTN1	Human	membrane raft assembly	involved_in	IMP		150520179	PMID:12805216	UniProt	PMID:12805216
RFTN1	Human	positive regulation of growth rate	involved_in	IMP		150520179	PMID:12805216	UniProt	PMID:12805216
RFTN1	Human	positive regulation of interleukin-17 production	involved_in	ISS	UniProtKB:Q6A0D4	150520179		UniProt	GO_REF:0000024
RFTN1	Human	positive regulation of interleukin-17 production	involved_in	IEA	UniProtKB:Q6A0D4 and ensembl:ENSMUSP00000046524	150520179		Ensembl	GO_REF:0000107
RFTN1	Human	protein localization to membrane raft	involved_in	ISS	UniProtKB:Q6A0D4	150520179		CAFA	GO_REF:0000024
RFTN1	Human	protein localization to membrane raft	involved_in	IEA	UniProtKB:Q6A0D4 and ensembl:ENSMUSP00000046524	150520179		Ensembl	GO_REF:0000107
RFTN1	Human	protein transport into membrane raft	involved_in	IEA	UniProtKB:Q6A0D4 and ensembl:ENSMUSP00000046524	150520179		Ensembl	GO_REF:0000107
RFTN1	Human	protein transport into membrane raft	involved_in	ISS	UniProtKB:Q6A0D4	150520179		CAFA	GO_REF:0000024
RFTN1	Human	response to exogenous dsRNA	acts_upstream_of_or_within	IMP		150520179	PMID:21266579	MGI	PMID:21266579
RFTN1	Human	T cell antigen processing and presentation	involved_in	ISS	UniProtKB:Q6A0D4	150520179		CAFA	GO_REF:0000024
RFTN1	Human	T cell antigen processing and presentation	involved_in	IEA	UniProtKB:Q6A0D4 and ensembl:ENSMUSP00000046524	150520179		Ensembl	GO_REF:0000107
RFTN1	Human	T cell receptor signaling pathway	involved_in	ISS	UniProtKB:Q6A0D4	150520179		CAFA	GO_REF:0000024
RFTN1	Human	T cell receptor signaling pathway	involved_in	IEA	UniProtKB:Q6A0D4 and ensembl:ENSMUSP00000046524	150520179		Ensembl	GO_REF:0000107
RFTN1	Human	toll-like receptor 3 signaling pathway	acts_upstream_of_or_within	IMP		150520179	PMID:21266579	MGI	PMID:21266579

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RFTN1	Human	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
RFTN1	Human	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
RFTN1	Human	cytoplasm	located_in	IDA		150520179	PMID:21266579	MGI	PMID:21266579
RFTN1	Human	early endosome	located_in	IEA	UniProtKB-SubCell:SL-0094	150520179		UniProt	GO_REF:0000044
RFTN1	Human	endosome	located_in	IDA		150520179	PMID:21266579	MGI	PMID:21266579
RFTN1	Human	endosome	located_in	IEA	UniProtKB-SubCell:SL-0101	150520179		UniProt	GO_REF:0000044
RFTN1	Human	endosome	located_in	IEA	UniProtKB-KW:KW-0967	150520179		UniProt	GO_REF:0000043
RFTN1	Human	extracellular exosome	located_in	HDA		150520179	PMID:20458337	UniProt	PMID:20458337
RFTN1	Human	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
RFTN1	Human	membrane raft	located_in	IEA	UniProtKB-SubCell:SL-0370	150520179		UniProt	GO_REF:0000044
RFTN1	Human	membrane raft	located_in	IDA		150520179	PMID:12805216 and PMID:21955986	UniProt	PMID:12805216 and PMID:21955986
RFTN1	Human	plasma membrane	located_in	IEA	UniProtKB-SubCell:SL-0039	150520179		UniProt	GO_REF:0000044
RFTN1	Human	plasma membrane	located_in	IDA		150520179	PMID:12805216 and PMID:21266579	MGI	PMID:12805216 and PMID:21266579
RFTN1	Human	plasma membrane	located_in	IEA	UniProtKB-KW:KW-1003	150520179		UniProt	GO_REF:0000043
RFTN1	Human	protein-containing complex	part_of	IDA		150520179	PMID:21266579	MGI	PMID:21266579

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
RFTN1	Human	double-stranded RNA binding	enables	IDA		150520179	PMID:21266579	MGI	PMID:21266579

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Integrated microarray analysis provided novel insights to the pathogenesis of glaucoma.	Wang J, etal., Mol Med Rep. 2017 Dec;16(6):8735-8746. doi: 10.3892/mmr.2017.7711. Epub 2017 Oct 4.

PMID:7788527	PMID:12477932	PMID:12805216	PMID:15489334	PMID:16344560	PMID:17081983	PMID:19553259	PMID:19786618	PMID:19834535	PMID:20379614	PMID:20395239	PMID:20458337
PMID:21266579	PMID:21955986	PMID:22222511	PMID:22810586	PMID:23645746	PMID:24104479	PMID:26186194	PMID:26760575	PMID:27022195	PMID:27880917	PMID:28514442	PMID:29509190
PMID:29568061	PMID:31091453	PMID:31527615	PMID:31536960	PMID:32274611	PMID:33961781	PMID:34079125	PMID:34709727	PMID:35490655	PMID:35575683	PMID:35676659	PMID:36139155
PMID:36215168	PMID:36341844	PMID:36424410	PMID:36976175	PMID:37208489	PMID:38117590	PMID:38278125	PMID:39358380	PMID:39823405

RFTN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	16,315,845 - 16,513,699 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	16,313,574 - 16,514,026 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	16,357,352 - 16,555,206 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	16,332,356 - 16,530,226 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	16,296,470 - 16,494,283 (-)	NCBI		Celera
Cytogenetic Map	3	p24.3	NCBI
HuRef	3	16,290,978 - 16,488,996 (-)	NCBI		HuRef
CHM1_1	3	16,308,420 - 16,506,893 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	16,317,057 - 16,514,836 (-)	NCBI		T2T-CHM13v2.0

Rftn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	50,300,287 - 50,497,525 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	50,299,285 - 50,497,702 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	49,993,258 - 50,190,497 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	49,992,257 - 50,190,674 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	50,132,632 - 50,329,822 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	49,458,874 - 49,656,064 (-)	NCBI		MGSCv36	mm8
Celera	17	53,430,090 - 53,626,629 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	25.86	NCBI

Rftn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	18,302,143 - 18,499,819 (+)	NCBI		GRCr8
mRatBN7.2	9	10,804,611 - 11,002,084 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	10,804,611 - 11,002,084 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	19,306,013 - 19,502,552 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	24,372,610 - 24,569,138 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	22,754,195 - 22,950,721 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	12,740,885 - 12,942,358 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	12,740,885 - 12,942,358 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	11,679,882 - 11,880,237 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	6,008,948 - 6,207,477 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	8,582,887 - 8,778,558 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

Rftn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	8,603,401 - 8,779,896 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	8,605,057 - 8,801,187 (-)	NCBI	ChiLan1.0	ChiLan1.0

RFTN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	16,301,250 - 16,500,922 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	16,306,013 - 16,505,411 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	16,241,255 - 16,441,402 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	16,578,092 - 16,778,464 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	16,578,092 - 16,778,464 (-)	Ensembl	panpan1.1		panPan2

RFTN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	26,272,103 - 26,472,610 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	26,282,392 - 26,472,536 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	26,247,350 - 26,447,817 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	26,773,327 - 26,973,915 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	26,773,112 - 26,973,909 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	26,474,319 - 26,674,595 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	26,535,808 - 26,736,282 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	26,784,871 - 26,985,542 (+)	NCBI		UU_Cfam_GSD_1.0

Rftn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	175,980,661 - 176,179,125 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	9,117,247 - 9,317,704 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	9,119,234 - 9,317,696 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RFTN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	3,454,454 - 3,674,998 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	3,454,448 - 3,675,072 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	3,744,156 - 3,861,922 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RFTN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	61,159,573 - 61,290,342 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	61,159,930 - 61,289,965 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	34,169,257 - 34,371,665 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rftn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624821	1,562,778 - 1,751,345 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624821	1,561,845 - 1,763,654 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in RFTN1
52 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 3p26.3-22.2(chr3:52266-37148076)x3	copy number gain	See cases [RCV000051097]	Chr3:52266..37148076 [GRCh38] Chr3:93949..37189567 [GRCh37] Chr3:68949..37164571 [NCBI36] Chr3:3p26.3-22.2	pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:52066-20280127)x3	copy number gain	See cases [RCV000051690]	Chr3:52066..20280127 [GRCh38] Chr3:93749..20321619 [GRCh37] Chr3:68749..20296623 [NCBI36] Chr3:3p26.3-24.3	pathogenic
GRCh38/hg38 3p25.3-22.2(chr3:11463328-38919543)x3	copy number gain	See cases [RCV000051720]	Chr3:11463328..38919543 [GRCh38] Chr3:11504802..38961034 [GRCh37] Chr3:11479802..38936038 [NCBI36] Chr3:3p25.3-22.2	pathogenic
NM_015150.1(RFTN1):c.332+11767C>A	single nucleotide variant	Lung cancer [RCV000093220]	Chr3:16422084 [GRCh38] Chr3:16463591 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1435A>G (p.Lys479Glu)	single nucleotide variant	not specified [RCV004254955]	Chr3:16317130 [GRCh38] Chr3:16358637 [GRCh37] Chr3:3p24.3	uncertain significance
GRCh38/hg38 3p26.3-24.1(chr3:32241-30064208)x3	copy number gain	See cases [RCV000138004]	Chr3:32241..30064208 [GRCh38] Chr3:73914..30105699 [GRCh37] Chr3:48914..30080703 [NCBI36] Chr3:3p26.3-24.1	pathogenic
GRCh38/hg38 3p26.3-22.1(chr3:53308-41381521)x3	copy number gain	See cases [RCV000141810]	Chr3:53308..41381521 [GRCh38] Chr3:94991..41423012 [GRCh37] Chr3:69991..41398016 [NCBI36] Chr3:3p26.3-22.1	pathogenic
GRCh38/hg38 3p25.1-24.3(chr3:15304910-16372771)x3	copy number gain	See cases [RCV000143403]	Chr3:15304910..16372771 [GRCh38] Chr3:15346417..16414278 [GRCh37] Chr3:15321421..16389282 [NCBI36] Chr3:3p25.1-24.3	likely benign
GRCh38/hg38 3p25.1-24.3(chr3:14360747-21656134)x4	copy number gain	See cases [RCV000143767]	Chr3:14360747..21656134 [GRCh38] Chr3:14402247..21697626 [GRCh37] Chr3:14377251..21672630 [NCBI36] Chr3:3p25.1-24.3	pathogenic
GRCh38/hg38 3p26.3-24.1(chr3:52266-29248782)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051718]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051718]\|See cases [RCV000051718]	Chr3:52266..29248782 [GRCh38] Chr3:93949..29290273 [GRCh37] Chr3:68949..29265277 [NCBI36] Chr3:3p26.3-24.1	pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:63843-19510600)x3	copy number gain	See cases [RCV000051719]	Chr3:63843..19510600 [GRCh38] Chr3:105526..19552092 [GRCh37] Chr3:80526..19527096 [NCBI36] Chr3:3p26.3-24.3	pathogenic
GRCh38/hg38 3p26.3-24.3(chr3:32241-20334387)x3	copy number gain	See cases [RCV000137941]	Chr3:32241..20334387 [GRCh38] Chr3:73914..20375879 [GRCh37] Chr3:48914..20350883 [NCBI36] Chr3:3p26.3-24.3	pathogenic
GRCh37/hg19 3p26.3-24.2(chr3:61891-24432821)x3	copy number gain	See cases [RCV000447247]	Chr3:61891..24432821 [GRCh37] Chr3:3p26.3-24.2	pathogenic
GRCh37/hg19 3p26.3-22.3(chr3:61891-33958201)x3	copy number gain	See cases [RCV000510429]	Chr3:61891..33958201 [GRCh37] Chr3:3p26.3-22.3	pathogenic
GRCh37/hg19 3p25.1-24.3(chr3:13720222-17808236)x1	copy number loss	See cases [RCV000511037]	Chr3:13720222..17808236 [GRCh37] Chr3:3p25.1-24.3	likely pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-36710181)x3	copy number gain	See cases [RCV000448528]	Chr3:61891..36710181 [GRCh37] Chr3:3p26.3-22.2	pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-37459464)x3	copy number gain	See cases [RCV000511463]	Chr3:61891..37459464 [GRCh37] Chr3:3p26.3-22.2	pathogenic
NM_015150.2(RFTN1):c.1352G>A (p.Arg451Lys)	single nucleotide variant	not specified [RCV004325941]	Chr3:16317213 [GRCh38] Chr3:16358720 [GRCh37] Chr3:3p24.3	uncertain significance
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)	copy number gain	See cases [RCV000512358]	Chr3:61892..197851986 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3	copy number gain	See cases [RCV000511055]	Chr3:61892..197851986 [GRCh37] Chr3:3p26.3-q29	pathogenic
NM_015150.2(RFTN1):c.1524G>A (p.Met508Ile)	single nucleotide variant	not specified [RCV004320432]	Chr3:16317041 [GRCh38] Chr3:16358548 [GRCh37] Chr3:3p24.3	uncertain significance
GRCh37/hg19 3p26.1-24.3(chr3:5173870-16760262)x3	copy number gain	not provided [RCV000682233]	Chr3:5173870..16760262 [GRCh37] Chr3:3p26.1-24.3	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3	copy number gain	not provided [RCV000742138]	Chr3:61495..197838262 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3	copy number gain	not provided [RCV000742133]	Chr3:60174..197948027 [GRCh37] Chr3:3p26.3-q29	pathogenic
GRCh37/hg19 3p25.1-24.3(chr3:15752529-16524171)x3	copy number gain	not provided [RCV000849424]	Chr3:15752529..16524171 [GRCh37] Chr3:3p25.1-24.3	uncertain significance
NM_015150.2(RFTN1):c.43C>T (p.Arg15Trp)	single nucleotide variant	not specified [RCV004302419]	Chr3:16493827 [GRCh38] Chr3:16535334 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.792C>A (p.Asn264Lys)	single nucleotide variant	not specified [RCV004326636]	Chr3:16377752 [GRCh38] Chr3:16419259 [GRCh37] Chr3:3p24.3	uncertain significance
GRCh37/hg19 3p26.3-24.3(chr3:1897972-19519085)x3	copy number gain	not provided [RCV000682215]	Chr3:1897972..19519085 [GRCh37] Chr3:3p26.3-24.3	pathogenic
GRCh37/hg19 3p25.2-24.2(chr3:13276005-24295240)x3	copy number gain	not provided [RCV000742260]	Chr3:13276005..24295240 [GRCh37] Chr3:3p25.2-24.2	pathogenic
Single allele	deletion	3p- syndrome [RCV002280352]	Chr3:13371737..20095506 [GRCh38] Chr3:3p25.1-24.3	pathogenic
GRCh37/hg19 3p25.1-24.3(chr3:15085863-16402392)x3	copy number gain	not provided [RCV001834333]	Chr3:15085863..16402392 [GRCh37] Chr3:3p25.1-24.3	uncertain significance
GRCh37/hg19 3p26.3-22.2(chr3:61891-36710181)	copy number gain	not specified [RCV002053300]	Chr3:61891..36710181 [GRCh37] Chr3:3p26.3-22.2	pathogenic
NM_015150.2(RFTN1):c.724G>A (p.Gly242Arg)	single nucleotide variant	not specified [RCV004171418]	Chr3:16377820 [GRCh38] Chr3:16419327 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1721C>T (p.Thr574Met)	single nucleotide variant	not specified [RCV004231168]	Chr3:16316844 [GRCh38] Chr3:16358351 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1355A>G (p.Glu452Gly)	single nucleotide variant	not specified [RCV004147675]	Chr3:16317210 [GRCh38] Chr3:16358717 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1457C>A (p.Ser486Tyr)	single nucleotide variant	not specified [RCV004195482]	Chr3:16317108 [GRCh38] Chr3:16358615 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.592G>A (p.Ala198Thr)	single nucleotide variant	not specified [RCV004202820]	Chr3:16377952 [GRCh38] Chr3:16419459 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.694C>G (p.Pro232Ala)	single nucleotide variant	not specified [RCV004237947]	Chr3:16377850 [GRCh38] Chr3:16419357 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.937G>A (p.Gly313Ser)	single nucleotide variant	not specified [RCV004078359]	Chr3:16370169 [GRCh38] Chr3:16411676 [GRCh37] Chr3:3p24.3	likely benign
NM_015150.2(RFTN1):c.23T>C (p.Leu8Ser)	single nucleotide variant	not specified [RCV004157392]	Chr3:16493847 [GRCh38] Chr3:16535354 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.878G>T (p.Arg293Leu)	single nucleotide variant	not specified [RCV004092167]	Chr3:16370228 [GRCh38] Chr3:16411735 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.712A>C (p.Ser238Arg)	single nucleotide variant	not specified [RCV004213395]	Chr3:16377832 [GRCh38] Chr3:16419339 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1730A>G (p.Glu577Gly)	single nucleotide variant	not specified [RCV004195483]	Chr3:16316835 [GRCh38] Chr3:16358342 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.736G>C (p.Gly246Arg)	single nucleotide variant	not specified [RCV004093724]	Chr3:16377808 [GRCh38] Chr3:16419315 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1517A>G (p.Glu506Gly)	single nucleotide variant	not specified [RCV004123531]	Chr3:16317048 [GRCh38] Chr3:16358555 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.946G>A (p.Ala316Thr)	single nucleotide variant	not specified [RCV004284824]	Chr3:16370160 [GRCh38] Chr3:16411667 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1003G>A (p.Ala335Thr)	single nucleotide variant	not specified [RCV004342811]	Chr3:16370103 [GRCh38] Chr3:16411610 [GRCh37] Chr3:3p24.3	uncertain significance
GRCh37/hg19 3p26.3-24.1(chr3:310747-28297447)x3	copy number gain	not provided [RCV003484107]	Chr3:310747..28297447 [GRCh37] Chr3:3p26.3-24.1	pathogenic
NM_015150.2(RFTN1):c.699C>T (p.Leu233=)	single nucleotide variant	not provided [RCV003433493]	Chr3:16377845 [GRCh38] Chr3:16419352 [GRCh37] Chr3:3p24.3	likely benign
NM_015150.2(RFTN1):c.1233C>T (p.Pro411=)	single nucleotide variant	not provided [RCV003433492]	Chr3:16326790 [GRCh38] Chr3:16368297 [GRCh37] Chr3:3p24.3	likely benign
NM_015150.2(RFTN1):c.1566T>C (p.Pro522=)	single nucleotide variant	not provided [RCV003433491]	Chr3:16316999 [GRCh38] Chr3:16358506 [GRCh37] Chr3:3p24.3	likely benign
GRCh37/hg19 3p26.3-22.3(chr3:61891-33946644)x3	copy number gain	not specified [RCV003986437]	Chr3:61891..33946644 [GRCh37] Chr3:3p26.3-22.3	pathogenic
GRCh37/hg19 3p26.3-22.3(chr3:60000-34461438)x3	copy number gain	not provided [RCV004577500]	Chr3:60000..34461438 [GRCh37] Chr3:3p26.3-22.3	pathogenic
NM_015150.2(RFTN1):c.1724T>C (p.Val575Ala)	single nucleotide variant	not specified [RCV004658315]	Chr3:16316841 [GRCh38] Chr3:16358348 [GRCh37] Chr3:3p24.3	likely benign
NM_015150.2(RFTN1):c.115C>T (p.Arg39Cys)	single nucleotide variant	not specified [RCV004658314]	Chr3:16493755 [GRCh38] Chr3:16535262 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1237G>A (p.Val413Ile)	single nucleotide variant	not specified [RCV004855245]	Chr3:16326786 [GRCh38] Chr3:16368293 [GRCh37] Chr3:3p24.3	likely benign
NM_015150.2(RFTN1):c.1366A>G (p.Asn456Asp)	single nucleotide variant	not specified [RCV004855247]	Chr3:16317199 [GRCh38] Chr3:16358706 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1234G>A (p.Val412Ile)	single nucleotide variant	not specified [RCV004855248]	Chr3:16326789 [GRCh38] Chr3:16368296 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1259G>A (p.Ser420Asn)	single nucleotide variant	not specified [RCV004850121]	Chr3:16323449 [GRCh38] Chr3:16364956 [GRCh37] Chr3:3p24.3	likely benign
NM_015150.2(RFTN1):c.1514C>T (p.Ser505Phe)	single nucleotide variant	not specified [RCV004855241]	Chr3:16317051 [GRCh38] Chr3:16358558 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.757G>A (p.Gly253Arg)	single nucleotide variant	not specified [RCV004850117]	Chr3:16377787 [GRCh38] Chr3:16419294 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.296A>T (p.His99Leu)	single nucleotide variant	not specified [RCV004850118]	Chr3:16433887 [GRCh38] Chr3:16475394 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1111G>A (p.Asp371Asn)	single nucleotide variant	not specified [RCV004850120]	Chr3:16357967 [GRCh38] Chr3:16399474 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.10G>A (p.Gly4Arg)	single nucleotide variant	not specified [RCV004855242]	Chr3:16493860 [GRCh38] Chr3:16535367 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1390G>A (p.Gly464Ser)	single nucleotide variant	not specified [RCV004326461]	Chr3:16317175 [GRCh38] Chr3:16358682 [GRCh37] Chr3:3p24.3	uncertain significance
GRCh37/hg19 3p26.3-24.2(chr3:61891-24432821)	copy number gain	not specified [RCV002053299]	Chr3:61891..24432821 [GRCh37] Chr3:3p26.3-24.2	pathogenic
GRCh37/hg19 3p25.1-24.2(chr3:13836340-25357427)x3	copy number gain	See cases [RCV002287839]	Chr3:13836340..25357427 [GRCh37] Chr3:3p25.1-24.2	pathogenic
NM_015150.2(RFTN1):c.788G>A (p.Ser263Asn)	single nucleotide variant	not specified [RCV004076691]	Chr3:16377756 [GRCh38] Chr3:16419263 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1459A>G (p.Lys487Glu)	single nucleotide variant	not specified [RCV004334989]	Chr3:16317106 [GRCh38] Chr3:16358613 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.213G>C (p.Glu71Asp)	single nucleotide variant	not specified [RCV004335394]	Chr3:16433970 [GRCh38] Chr3:16475477 [GRCh37] Chr3:3p24.3	uncertain significance
GRCh37/hg19 3p25.1(chr3:16320205-16399521)x1	copy number loss	not provided [RCV003485379]	Chr3:16320205..16399521 [GRCh37] Chr3:3p25.1	uncertain significance
NM_015150.2(RFTN1):c.55A>G (p.Ile19Val)	single nucleotide variant	not specified [RCV004446330]	Chr3:16493815 [GRCh38] Chr3:16535322 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.877C>T (p.Arg293Trp)	single nucleotide variant	not specified [RCV004446331]	Chr3:16370229 [GRCh38] Chr3:16411736 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.396A>C (p.Leu132Phe)	single nucleotide variant	not specified [RCV004446329]	Chr3:16409420 [GRCh38] Chr3:16450927 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1630A>G (p.Ser544Gly)	single nucleotide variant	not specified [RCV004850119]	Chr3:16316935 [GRCh38] Chr3:16358442 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.1187C>T (p.Ser396Leu)	single nucleotide variant	not specified [RCV004850116]	Chr3:16326836 [GRCh38] Chr3:16368343 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.530C>T (p.Pro177Leu)	single nucleotide variant	not specified [RCV004855243]	Chr3:16378014 [GRCh38] Chr3:16419521 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.262C>T (p.Pro88Ser)	single nucleotide variant	not specified [RCV004855246]	Chr3:16433921 [GRCh38] Chr3:16475428 [GRCh37] Chr3:3p24.3	uncertain significance
NM_015150.2(RFTN1):c.764G>C (p.Ser255Thr)	single nucleotide variant	not specified [RCV004855249]	Chr3:16377780 [GRCh38] Chr3:16419287 [GRCh37] Chr3:3p24.3	uncertain significance

Predicted Target Of

	Summary Value
Count of predictions:	2839
Count of miRNA genes:	929
Interacting mature miRNAs:	1102
Transcripts:	ENST00000334133, ENST00000431547, ENST00000432519, ENST00000441460, ENST00000449415, ENST00000451036, ENST00000453536, ENST00000470458, ENST00000483671, ENST00000484752, ENST00000495666, ENST00000607320
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
597144662	GWAS1240736_H	COVID-19 QTL GWAS1240736 (human)		4e-13	COVID-19		3	16398091	16398092	Human
407128006	GWAS776982_H	obesity QTL GWAS776982 (human)		0.000005	obesity		3	16366982	16366983	Human
597332600	GWAS1428674_H	S-warfarin measurement QTL GWAS1428674 (human)		0.000004	S-warfarin measurement		3	16466863	16466864	Human
597424893	GWAS1520967_H	thoracic aortic aneurysm QTL GWAS1520967 (human)		0.0000008	thoracic aortic aneurysm		3	16322022	16322023	Human
597144465	GWAS1240539_H	COVID-19 QTL GWAS1240539 (human)		0.000009	COVID-19		3	16399921	16399922	Human
597336124	GWAS1432198_H	language measurement QTL GWAS1432198 (human)		0.000005	language measurement		3	16466672	16466673	Human
597198708	GWAS1294782_H	systolic blood pressure QTL GWAS1294782 (human)		8e-10	systolic blood pressure	systolic blood pressure (CMO:0000004)	3	16322182	16322183	Human
597146075	GWAS1242149_H	COVID-19 QTL GWAS1242149 (human)		0.000004	COVID-19		3	16403074	16403075	Human
597140058	GWAS1236132_H	COVID-19 QTL GWAS1236132 (human)		2e-08	COVID-19		3	16398099	16398100	Human
597135001	GWAS1231075_H	diastolic blood pressure QTL GWAS1231075 (human)		1e-08	diastolic blood pressure	diastolic blood pressure (CMO:0000005)	3	16322182	16322183	Human
407039539	GWAS688515_H	urate measurement, body mass index QTL GWAS688515 (human)		0.000006	urate measurement, body mass index	body mass index (BMI) (CMO:0000105)	3	16376048	16376049	Human
597145061	GWAS1241135_H	COVID-19 QTL GWAS1241135 (human)		0.0000002	COVID-19		3	16412973	16412974	Human
597328578	GWAS1424652_H	response to antibiotic, hematological measurement QTL GWAS1424652 (human)		4e-08	response to antibiotic, hematological measurement	blood measurement (CMO:0000035)	3	16509706	16509707	Human
2316345	GLUCO224_H	Glucose level QTL 224 (human)	1.27	0.008	Glucose level		3	1	21543441	Human
597176610	GWAS1272684_H	fumarate measurement QTL GWAS1272684 (human)		3e-08	fumarate measurement		3	16416516	16416517	Human
597144330	GWAS1240404_H	COVID-19 QTL GWAS1240404 (human)		0.0000003	COVID-19		3	16405919	16405920	Human

D3S3473

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,522,348 - 16,522,566	UniSTS	GRCh37
Build 36	3	16,497,352 - 16,497,570	RGD	NCBI36
Celera	3	16,461,411 - 16,461,629	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,456,119 - 16,456,337	UniSTS
Marshfield Genetic Map	3	42.1	RGD
Marshfield Genetic Map	3	42.1	UniSTS
Genethon Genetic Map	3	35.8	UniSTS
deCODE Assembly Map	3	36.69	UniSTS
Stanford-G3 RH Map	3	794.0	UniSTS
Whitehead-YAC Contig Map	3		UniSTS
NCBI RH Map	3	185.3	UniSTS
GeneMap99-G3 RH Map	3	794.0	UniSTS

RH12058

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,357,416 - 16,357,580	UniSTS	GRCh37
Build 36	3	16,332,420 - 16,332,584	RGD	NCBI36
Celera	3	16,296,534 - 16,296,698	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,291,042 - 16,291,206	UniSTS
GeneMap99-GB4 RH Map	3	69.58	UniSTS
NCBI RH Map	3	192.6	UniSTS

RH35828

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,502,627 - 16,502,800	UniSTS	GRCh37
Build 36	3	16,477,631 - 16,477,804	RGD	NCBI36
Celera	3	16,441,690 - 16,441,863	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,436,396 - 16,436,569	UniSTS
GeneMap99-GB4 RH Map	3	68.65	UniSTS

RH92877

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,381,082 - 16,381,205	UniSTS	GRCh37
Build 36	3	16,356,086 - 16,356,209	RGD	NCBI36
Celera	3	16,320,200 - 16,320,323	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,314,708 - 16,314,831	UniSTS
GeneMap99-GB4 RH Map	3	69.79	UniSTS

SHGC-58196

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,433,448 - 16,433,666	UniSTS	GRCh37
Build 36	3	16,408,452 - 16,408,670	RGD	NCBI36
Celera	3	16,372,558 - 16,372,776	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,367,016 - 16,367,234	UniSTS
TNG Radiation Hybrid Map	3	9787.0	UniSTS

SHGC-79918

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,392,438 - 16,392,729	UniSTS	GRCh37
Build 36	3	16,367,442 - 16,367,733	RGD	NCBI36
Celera	3	16,331,550 - 16,331,841	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,326,036 - 16,326,327	UniSTS
TNG Radiation Hybrid Map	3	9774.0	UniSTS

SHGC-86345

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,465,327 - 16,465,599	UniSTS	GRCh37
Build 36	3	16,440,331 - 16,440,603	RGD	NCBI36
Celera	3	16,404,389 - 16,404,661	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,399,081 - 16,399,353	UniSTS

SHGC-83722

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,513,475 - 16,513,816	UniSTS	GRCh37
Build 36	3	16,488,479 - 16,488,820	RGD	NCBI36
Celera	3	16,452,538 - 16,452,879	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,447,246 - 16,447,587	UniSTS
TNG Radiation Hybrid Map	3	9820.0	UniSTS

G62938

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,440,735 - 16,441,007	UniSTS	GRCh37
Build 36	3	16,415,739 - 16,416,011	RGD	NCBI36
Celera	3	16,379,840 - 16,380,112	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,374,273 - 16,374,545	UniSTS
TNG Radiation Hybrid Map	3	9791.0	UniSTS

SHGC-105736

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,460,471 - 16,460,574	UniSTS	GRCh37
Build 36	3	16,435,475 - 16,435,578	RGD	NCBI36
Celera	3	16,399,533 - 16,399,636	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,394,225 - 16,394,328	UniSTS

SHGC-150983

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,522,292 - 16,522,563	UniSTS	GRCh37
Build 36	3	16,497,296 - 16,497,567	RGD	NCBI36
Celera	3	16,461,355 - 16,461,626	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,456,063 - 16,456,334	UniSTS
TNG Radiation Hybrid Map	3	9825.0	UniSTS
TNG Radiation Hybrid Map	10	60179.0	UniSTS

RAFTLIN_9316

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,357,326 - 16,358,130	UniSTS	GRCh37
Build 36	3	16,332,330 - 16,333,134	RGD	NCBI36
Celera	3	16,296,444 - 16,297,248	RGD
HuRef	3	16,290,952 - 16,291,756	UniSTS

RH25312

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,357,395 - 16,357,529	UniSTS	GRCh37
Build 36	3	16,332,399 - 16,332,533	RGD	NCBI36
Celera	3	16,296,513 - 16,296,647	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,291,021 - 16,291,155	UniSTS
GeneMap99-GB4 RH Map	3	69.25	UniSTS
NCBI RH Map	3	190.5	UniSTS

UniSTS:31995

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,366,048 - 16,366,237	UniSTS	GRCh37
GRCh37	10	109,383,977 - 109,384,122	UniSTS	GRCh37
Build 36	3	16,341,052 - 16,341,241	RGD	NCBI36
Celera	3	16,305,166 - 16,305,355	RGD
Celera	10	103,123,098 - 103,123,243	UniSTS
HuRef	3	165,771,634 - 165,771,780	UniSTS
HuRef	3	16,299,674 - 16,299,863	UniSTS
HuRef	10	103,016,425 - 103,016,570	UniSTS

D3S3885

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,358,078 - 16,358,224	UniSTS	GRCh37
Build 36	3	16,333,082 - 16,333,228	RGD	NCBI36
Celera	3	16,297,196 - 16,297,342	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,291,704 - 16,291,850	UniSTS
Stanford-G3 RH Map	3	787.0	UniSTS
Whitehead-YAC Contig Map	3		UniSTS
NCBI RH Map	3	184.9	UniSTS
GeneMap99-G3 RH Map	3	787.0	UniSTS

RH78558

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,424,660 - 16,424,800	UniSTS	GRCh37
Build 36	3	16,399,664 - 16,399,804	RGD	NCBI36
Celera	3	16,363,773 - 16,363,913	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,358,232 - 16,358,372	UniSTS
GeneMap99-GB4 RH Map	3	68.38	UniSTS

SHGC-76751

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	3	16,377,702 - 16,377,869	UniSTS	GRCh37
Build 36	3	16,352,706 - 16,352,873	RGD	NCBI36
Celera	3	16,316,820 - 16,316,987	RGD
Cytogenetic Map	3	p24.3	UniSTS
HuRef	3	16,311,328 - 16,311,495	UniSTS
TNG Radiation Hybrid Map	3	9774.0	UniSTS
GeneMap99-GB4 RH Map	3	68.65	UniSTS
NCBI RH Map	3	192.9	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
1204	2406	2788	2252	4965	1723	2344	4	622	1951	464	2269	7272	6467	47	3725	1	852	1739	1611	174	1


RefSeq Transcripts	NM_015150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005264985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005264986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006713069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011533529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011533530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011533531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017006005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017006006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017006007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047447779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047447780	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047447781	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_047447783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054345823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054345824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054345825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054345826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054345827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054345828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054345829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054345830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC010727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC090948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK074446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK301024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK303846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK310258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AU138240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY237654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC006400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC014032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC032349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC041884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC051336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC069209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC121795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D42043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000334133 ⟹ ENSP00000334153

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,315,845 - 16,513,699 (-)	Ensembl

Ensembl Acc Id:

ENST00000431547 ⟹ ENSP00000393216

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,409,473 - 16,514,026 (-)	Ensembl

Ensembl Acc Id:

ENST00000432519 ⟹ ENSP00000403926

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,315,845 - 16,482,865 (-)	Ensembl

Ensembl Acc Id:

ENST00000441460 ⟹ ENSP00000388718

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,378,095 - 16,512,922 (-)	Ensembl

Ensembl Acc Id:

ENST00000449415 ⟹ ENSP00000409427

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,378,095 - 16,512,904 (-)	Ensembl

Ensembl Acc Id:

ENST00000451036 ⟹ ENSP00000403997

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,377,719 - 16,513,374 (-)	Ensembl

Ensembl Acc Id:

ENST00000453536 ⟹ ENSP00000410493

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,409,428 - 16,513,522 (-)	Ensembl

Ensembl Acc Id:

ENST00000470458

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,378,072 - 16,472,599 (-)	Ensembl

Ensembl Acc Id:

ENST00000483671

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,316,530 - 16,370,966 (-)	Ensembl

Ensembl Acc Id:

ENST00000484752

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,378,053 - 16,484,835 (-)	Ensembl

Ensembl Acc Id:

ENST00000495666

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,377,893 - 16,434,770 (-)	Ensembl

Ensembl Acc Id:

ENST00000607320 ⟹ ENSP00000475367

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	3	16,313,574 - 16,326,867 (-)	Ensembl

RefSeq Acc Id:

NM_015150 ⟹ NP_055965

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,513,699 (-)	NCBI
GRCh37	3	16,357,352 - 16,555,222 (-)	RGD
Build 36	3	16,332,356 - 16,530,226 (-)	NCBI Archive
Celera	3	16,296,470 - 16,494,283 (-)	RGD
HuRef	3	16,290,978 - 16,488,996 (-)	ENTREZGENE
CHM1_1	3	16,308,420 - 16,506,893 (-)	NCBI
T2T-CHM13v2.0	3	16,317,057 - 16,514,836 (-)	NCBI

Sequence:

show sequence

GCTGGAGCCGGAGCGCGCCGGGCGCTGGGCGCAGCGAGCGAGAGCGCGGCGGCCGCGGGCTCCGGCGAGGGACAGACGCACCGATCGCCGGAGGGACAGACACACGACCACGCGGCGCCACCGCCCAC
GCCTCCACCCACCGGCGCCCAAGTCCTCCCCGCGCCGCCTCCTCTGTATGGCACAAACTTTCCTCCCGGGACGGAACACGCTGCCTCAGGGAGCCCGCGACCGCGCCTTCTCCTCCGCCGGTCCCATA
CGCTGCTGAAATGGGTTGCGGATTGAACAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAGAGGCCTCAGGTGGAAACCAAGATAGATGTGTCCTATGAATACCGCT
TCCTGGAGTTCACGACTCTGAGTGCTGCGGAGCTCCCTGGGTCCTCAGCAGTGAGGCTGGCCTCCCTGCGTGACCTGCCCGCCCAGCTCCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGCCCTG
CACCCCTTCGTGCAGCCCACCCATGAGCGGGAGAAGACGCCCCTGGAGCACATCTTTAGAGCCATCCTGATCAAGAAAACCGACAGATCTCAGAAAACTGATCTTCACAATGAAGGCTACATCTTGGA
ATTAGATTGCTGTTCCTCCTTAGACCACCCGACAGACCAGAAACTCATCCCAGAGTTCATTAAGAAGATCCAGGAGGCTGCAAGCCAGGGCCTGAAATTCGTTGGTGTTATACCTCAGTACCATTCCT
CTGTGAACTCGGCAGGCAGCAGTGCTCCGGTGTCTACTGCCAACAGCACCGAGGATGCCAGAGATGCAAAAAACGCACGTGGGGATCACGCGTCACTGGAGAATGAGAAACCGGGGACTGGGGATGTG
TGCAGTGCTCCGGCTGGGAGAAACCAAAGCCCAGAGCCCAGCTCAGGCCCCAGAGGGGAGGTGCCCCTCGCCAAGCAGCCCAGCTCACCCTCCGGAGAGGGAGATGGTGGAGAACTTTCACCACAGGG
GGTGAGCAAGACACTGGATGGACCGGAGAGCAACCCCTTGGAGGTGCATGAAGAGCCACTCTCAGGGAAAATGGAGATCTTCACCCTTTTCAACAAACCGAAGAGCCATCAGAAGTGCCGGCAATACT
ACCCTGTCACCATTCCTCTCCATGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGGACGCCAACTGGTTAGAGCACATGAGCGACCACTTCCGGAAAGGAGGCATGCTGGTGAACGCAGTCTTCTAC
CTTGGAATAGTGAATGATTCCTTACATGGCTTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAGCAAAACCATACAGGGCTATGATGCTATTGTGGTTGAACAATGGACAGTCCT
GGAAGGTGTCGAAGTGCAGACAGACTACGTGCCCCTGCTGAACTCGCTGGCGGCCTATGGCTGGCAGCTCACCTGTGTGCTACCAACTCCCGTCGTCAAGACTACCAGCGAGGGGAGTGTATCCACCA
AGCAGATTGTCTTTCTTCAGAGACCTTGTCTACCTCAGAAAATCAAGAAGAAGGAATCGAAGTTTCAGTGGCGATTCTCCAGAGAAGAAATGCACAACAGGCAGATGAGGAAATCAAAAGGTAAACTC
AGTGCCAGAGACAAACAACAAGCAGAAGAAAATGAGAAGAACTTAGAAGACCAGTCTTCCAAAGCTGGAGACATGGGAAACTGTGTTTCAGGACAGCAGCAGGAGGGTGGAGTCTCCGAGGAGATGAA
GGGCCCTGTCCAAGAGGACAAGGGAGAACAGCTGTCCCCTGGTGGCCTGCTGTGTGGGGTGGGTGTGGAGGGTGAGGCTGTGCAGAATGGTCCTGCCAGCCACAGCAGGGCCCTGGTGGGGATTTGCA
CTGGGCACTCCAATCCTGGAGAGGATGCCAGGGACGGGGATGCTGAGGAAGTCAGAGAGCTTGGTACGGTTGAAGAAAACTGAGTCTTGGGCAATTTGTGCTAAAACTAGGTGAGTTGCCAAACCCAA
GGCATCTTACCAACAGCTGGTTTGGGGGCTGGTTTCCCTGGTGTTGTGTGTTACCTACCCTTTGGCTTGGCTTGACCTCTCCTTGTGAGCTCACCTGAGCCCTCCCAGGGCCAGGTTCCTGACAGTGT
TGGTTTTTGCACATCCACTGGAAAGGTGTCATTAATGACCCAGTGTTAGAATGCAAGAGGTCAGGTTATTCTAGCCCTCATGGCTGAAGGCCCAGTCCTGGCTCCACCACTCCTCCAGCCAGAGGGTC
TGGACCATCCAGTGCCTGTCCTCGCCACAGGGCCTCCAGGGAGCATTCGGGTCAAATCCATGGACACCCTGGGCTACAAACCAAGGCTGCTGTTCATCCCACATCGTGTGGGGCAGTGTCCATCCCCT
GCAGCTACTTGGTGACTTAACAACTCCAGGAGCCCTGTCAGCTGCCCTCCTCCACCTAAACCCCTTCGACTCTTCTGCTTTGACAAAGAAAATGACATTGGGGAGGGGAGGTGCTCCGCCTCCCAGCT
TTTCTCAAAATAGTCCTATAGATACTGGTAATCTGGAAATGAAGAAGTAATTCTGTCTCTGCACCTACTTTTGCAGAATGTTCAAGGAAGTATTCTGTGTTAGTATTAATGCCAAAAAGTTGTTTTTA
AAGGTTTTGTACTCAGCACATCATACAAACCACATTACTTCTGTCACTTCAGGGCATCGGGACTGGCTGGCGCCCTTGTTATGTGCTATTTTAATCAGTGTAACATTGGTCAAGTTGTTACCCATGTA
TGCTGTGTTTATCATGTGTATATCGTCCAGAAAGTATTAAGGCTTTAGGTAGATGCAACTGGCGAACCTTGGAGAGGGAATGCTGATTGTCTTGACCAAACCCACAGCCTGTCTCTTCTCTTGTTTAG
TTACTTACGGCAATAAATCATCTATGAGTTAGTGCACCGTGA

hide sequence

RefSeq Acc Id:

XM_005264985 ⟹ XP_005265042

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,513,699 (-)	NCBI
GRCh37	3	16,357,352 - 16,555,222 (-)	NCBI

Sequence:

show sequence

GCAGCGAGCGAGAGCGCGGCGGCCGCGGGCTCCGGCGAGGGACAGACGCACCGATCGCCGGAGG
GACAGACACACGACCACGCGGCGCCACCGCCCACGCCTCCACCCACCGGCGCCCAAGTCCTCCCCGCGCCGCCTCCTCTGTATGGCACAAACTTTCCTCCCGGGACGGAACACGCTGCCTCAGGGAGC
CCGCGACCGCGCCTTCTCCTCCGCCGGTCCCATACGCAGCTGCTGAAATGGGTTGCGGATTGAACAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAGAGGCCTCAG
GTGGAAACCAAGATAGATGTGTCCTATGAATACCGCTTCCTGGAGTTCACGACTCTGAGTGCTGCGGAGCTCCCTGGGTCCTCAGCAGTGAGGCTGGCCTCCCTGCGTGACCTGCCCGCCCAGCTCCT
GGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGCCCTGCACCCCTTCGTGCAGCCCACCCATGAGCGGGAGAAGACGCCCCTGGAGCACATCTTTAGAGCCATCCTGATCAAGAAAACCGACAGATCTC
AGAAAACTGATCTTCACAATGAAGGCTACATCTTGGAATTAGATTGCTGTTCCTCCTTAGACCACCCGACAGACCAGAAACTCATCCCAGAGTTCATTAAGAAGATCCAGGAGGCTGCAAGCCAGGGC
CTGAAATTCGTTGGTGTTATACCTCAGTACCATTCCTCTGTGAACTCGGCAGGCAGCAGTGCTCCGGTGTCTACTGCCAACAGCACCGAGGATGCCAGAGATGCAAAAAACGCACGTGGGGATCACGC
GTCACTGGAGAATGAGAAACCGGGGACTGGGGATGTGTGCAGTGCTCCGGCTGGGAGAAACCAAAGCCCAGAGCCCAGCTCAGGCCCCAGAGGGGAGGTGCCCCTCGCCAAGCAGCCCAGCTCACCCT
CCGGAGAGGGAGATGGTGGAGAACTTTCACCACAGGGGGTGAGCAAGACACTGGATGGACCGGAGAGCAACCCCTTGGAGGTGCATGAAGAGCCACTCTCAGGGAAAATGGAGATCTTCACCCTTTTC
AACAAACCGAAGAGCCATCAGAAGTGCCGGCAATACTACCCTGTCACCATTCCTCTCCATGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGGACGCCAACTGGTTAGAGCACATGAGCGACCACTT
CCGGAAAGGAGGCATGCTGGTGAACGCAGTCTTCTACCTTGGAATAGTGAATGATTCCTTACATGGCTTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAGCAAAACCATACAGG
GCTATGATGCTATTGTGGTTGAACAATGGACAGTCCTGGAAGGTGTCGAAGTGCAGACAGACTACGTGCCCCTGCTGAACTCGCTGGCGGCCTATGGCTGGCAGCTCACCTGTGTGCTACCAACTCCC
GTCGTCAAGACTACCAGCGAGGGGAGTGTATCCACCAAGCAGATTGTCTTTCTTCAGAGACCTTGTCTACCTCAGAAAATCAAGAAGAAGGAATCGAAGTTTCAGTGGCGATTCTCCAGAGAAGAAAT
GCACAACAGGCAGATGAGGAAATCAAAAGGTAAACTCAGTGCCAGAGACAAACAACAAGCAGAAGAAAATGAGAAGAACTTAGAAGACCAGTCTTCCAAAGCTGGAGACATGGGAAACTGTGTTTCAG
GACAGCAGCAGGAGGGTGGAGTCTCCGAGGAGATGAAGGGCCCTGTCCAAGAGGACAAGGGAGAACAGCTGTCCCCTGGTGGCCTGCTGTGTGGGGTGGGTGTGGAGGGTGAGGCTGTGCAGAATGGT
CCTGCCAGCCACAGCAGGGCCCTGGTGGGGATTTGCACTGGGCACTCCAATCCTGGAGAGGATGCCAGGGACGGGGATGCTGAGGAAGTCAGAGAGCTTGGTACGGTTGAAGAAAACTGAGTCTTGGG
CAATTTGTGCTAAAACTAGGTGAGTTGCCAAACCCAAGGCATCTTACCAACAGCTGGTTTGGGGGCTGGTTTCCCTGGTGTTGTGTGTTACCTACCCTTTGGCTTGGCTTGACCTCTCCTTGTGAGCT
CACCTGAGCCCTCCCAGGGCCAGGTTCCTGACAGTGTTGGTTTTTGCACATCCACTGGAAAGGTGTCATTAATGACCCAGTGTTAGAATGCAAGAGGTCAGGTTATTCTAGCCCTCATGGCTGAAGGC
CCAGTCCTGGCTCCACCACTCCTCCAGCCAGAGGGTCTGGACCATCCAGTGCCTGTCCTCGCCACAGGGCCTCCAGGGAGCATTCGGGTCAAATCCATGGACACCCTGGGCTACAAACCAAGGCTGCT
GTTCATCCCACATCGTGTGGGGCAGTGTCCATCCCCTGCAGCTACTTGGTGACTTAACAACTCCAGGAGCCCTGTCAGCTGCCCTCCTCCACCTAAACCCCTTCGACTCTTCTGCTTTGACAAAGAAA
ATGACATTGGGGAGGGGAGGTGCTCCGCCTCCCAGCTTTTCTCAAAATAGTCCTATAGATACTGGTAATCTGGAAATGAAGAAGTAATTCTGTCTCTGCACCTACTTTTGCAGAATGTTCAAGGAAGT
ATTCTGTGTTAGTATTAATGCCAAAAAGTTGTTTTTAAAGGTTTTGTACTCAGCACATCATACAAACCACATTACTTCTGTCACTTCAGGGCATCGGGACTGGCTGGCGCCCTTGTTATGTGCTATTT
TAATCAGTGTAACATTGGTCAAGTTGTTACCCATGTATGCTGTGTTTATCATGTGTATATCGTCCAGAAAGTATTAAGGCTTTAGGTAGATGCAACTGGCGAACCTTGGAGAGGGAATGCTGATTGTC
TTGACCAAACCCACAGCCTGTCTCTTCTCTTGTTTAGTTACTTACGGCAATAAATCATCTATGAGTTAGTGCACCGTGA

hide sequence

RefSeq Acc Id:

XM_005264986 ⟹ XP_005265043

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,512,916 (-)	NCBI
GRCh37	3	16,357,352 - 16,555,222 (-)	NCBI

Sequence:

show sequence

GGGGACAGAGGTGCTGGACGTGTAGGAGCAGACATGCCGCGCGCTCCGAGGAAGCGCCGGAACCACCAGAAGCACAGGGACGCGGGTGCCGAGAGTCCCCAGCACTGAAAACGGGGATCTCCTCTTCT
CTGCTGAAATGGGTTGCGGATTGAACAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAGAGGCCTCAGGTGGAAACCAAGATAGATGTGTCCTATGAATACCGCTTC
CTGGAGTTCACGACTCTGAGTGCTGCGGAGCTCCCTGGGTCCTCAGCAGTGAGGCTGGCCTCCCTGCGTGACCTGCCCGCCCAGCTCCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGCCCTGCA
CCCCTTCGTGCAGCCCACCCATGAGCGGGAGAAGACGCCCCTGGAGCACATCTTTAGAGCCATCCTGATCAAGAAAACCGACAGATCTCAGAAAACTGATCTTCACAATGAAGGCTACATCTTGGAAT
TAGATTGCTGTTCCTCCTTAGACCACCCGACAGACCAGAAACTCATCCCAGAGTTCATTAAGAAGATCCAGGAGGCTGCAAGCCAGGGCCTGAAATTCGTTGGTGTTATACCTCAGTACCATTCCTCT
GTGAACTCGGCAGGCAGCAGTGCTCCGGTGTCTACTGCCAACAGCACCGAGGATGCCAGAGATGCAAAAAACGCACGTGGGGATCACGCGTCACTGGAGAATGAGAAACCGGGGACTGGGGATGTGTG
CAGTGCTCCGGCTGGGAGAAACCAAAGCCCAGAGCCCAGCTCAGGCCCCAGAGGGGAGGTGCCCCTCGCCAAGCAGCCCAGCTCACCCTCCGGAGAGGGAGATGGTGGAGAACTTTCACCACAGGGGG
TGAGCAAGACACTGGATGGACCGGAGAGCAACCCCTTGGAGGTGCATGAAGAGCCACTCTCAGGGAAAATGGAGATCTTCACCCTTTTCAACAAACCGAAGAGCCATCAGAAGTGCCGGCAATACTAC
CCTGTCACCATTCCTCTCCATGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGGACGCCAACTGGTTAGAGCACATGAGCGACCACTTCCGGAAAGGAGGCATGCTGGTGAACGCAGTCTTCTACCT
TGGAATAGTGAATGATTCCTTACATGGCTTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAGCAAAACCATACAGGGCTATGATGCTATTGTGGTTGAACAATGGACAGTCCTGG
AAGGTGTCGAAGTGCAGACAGACTACGTGCCCCTGCTGAACTCGCTGGCGGCCTATGGCTGGCAGCTCACCTGTGTGCTACCAACTCCCGTCGTCAAGACTACCAGCGAGGGGAGTGTATCCACCAAG
CAGATTGTCTTTCTTCAGAGACCTTGTCTACCTCAGAAAATCAAGAAGAAGGAATCGAAGTTTCAGTGGCGATTCTCCAGAGAAGAAATGCACAACAGGCAGATGAGGAAATCAAAAGGTAAACTCAG
TGCCAGAGACAAACAACAAGCAGAAGAAAATGAGAAGAACTTAGAAGACCAGTCTTCCAAAGCTGGAGACATGGGAAACTGTGTTTCAGGACAGCAGCAGGAGGGTGGAGTCTCCGAGGAGATGAAGG
GCCCTGTCCAAGAGGACAAGGGAGAACAGCTGTCCCCTGGTGGCCTGCTGTGTGGGGTGGGTGTGGAGGGTGAGGCTGTGCAGAATGGTCCTGCCAGCCACAGCAGGGCCCTGGTGGGGATTTGCACT
GGGCACTCCAATCCTGGAGAGGATGCCAGGGACGGGGATGCTGAGGAAGTCAGAGAGCTTGGTACGGTTGAAGAAAACTGAGTCTTGGGCAATTTGTGCTAAAACTAGGTGAGTTGCCAAACCCAAGG
CATCTTACCAACAGCTGGTTTGGGGGCTGGTTTCCCTGGTGTTGTGTGTTACCTACCCTTTGGCTTGGCTTGACCTCTCCTTGTGAGCTCACCTGAGCCCTCCCAGGGCCAGGTTCCTGACAGTGTTG
GTTTTTGCACATCCACTGGAAAGGTGTCATTAATGACCCAGTGTTAGAATGCAAGAGGTCAGGTTATTCTAGCCCTCATGGCTGAAGGCCCAGTCCTGGCTCCACCACTCCTCCAGCCAGAGGGTCTG
GACCATCCAGTGCCTGTCCTCGCCACAGGGCCTCCAGGGAGCATTCGGGTCAAATCCATGGACACCCTGGGCTACAAACCAAGGCTGCTGTTCATCCCACATCGTGTGGGGCAGTGTCCATCCCCTGC
AGCTACTTGGTGACTTAACAACTCCAGGAGCCCTGTCAGCTGCCCTCCTCCACCTAAACCCCTTCGACTCTTCTGCTTTGACAAAGAAAATGACATTGGGGAGGGGAGGTGCTCCGCCTCCCAGCTTT
TCTCAAAATAGTCCTATAGATACTGGTAATCTGGAAATGAAGAAGTAATTCTGTCTCTGCACCTACTTTTGCAGAATGTTCAAGGAAGTATTCTGTGTTAGTATTAATGCCAAAAAGTTGTTTTTAAA
GGTTTTGTACTCAGCACATCATACAAACCACATTACTTCTGTCACTTCAGGGCATCGGGACTGGCTGGCGCCCTTGTTATGTGCTATTTTAATCAGTGTAACATTGGTCAAGTTGTTACCCATGTATG
CTGTGTTTATCATGTGTATATCGTCCAGAAAGTATTAAGGCTTTAGGTAGATGCAACTGGCGAACCTTGGAGAGGGAATGCTGATTGTCTTGACCAAACCCACAGCCTGTCTCTTCTCTTGTTTAGTT
ACTTACGGCAATAAATCATCTATGAGTTAGTGCACCGTGA

hide sequence

RefSeq Acc Id:

XM_006713069 ⟹ XP_006713132

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,512,916 (-)	NCBI

Sequence:

show sequence

TGCTCTGGGGACAGAGGTGCTGGACGTGTAGGAGCAGACATGCCGCGCGCTCCGAGGAAGCGCC
GGAACCACCAGAAGCACAGGGACGCGGGTGCCGAGAGTCCCCAGCACTGAAAACGGGGATCTCCTCTTCTCAGCTGCTGAAATGGGTTGCGGATTGAACAAGTTAGAGAAACGTGATGAAAAACGGCC
TGGGAATATTTATTCAACTTTGAAGAGGCCTCAGGTGGAAACCAAGATAGATGTGTCCTATGAATACCGCTTCCTGGAGTTCACGACTCTGAGTGCTGCGGAGCTCCCTGGGTCCTCAGCAGTGAGGC
TGGCCTCCCTGCGTGACCTGCCCGCCCAGCTCCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGCCCTGCACCCCTTCGTGCAGCCCACCCATGAGCGGGAGAAGACGCCCCTGGAGCACATCTTT
AGAGCCATCCTGATCAAGAAAACCGACAGATCTCAGAAAACTGATCTTCACAATGAAGGCTACATCTTGGAATTAGATTGCTGTTCCTCCTTAGACCACCCGACAGACCAGAAACTCATCCCAGAGTT
CATTAAGAAGATCCAGGAGGCTGCAAGCCAGGGCCTGAAATTCGTTGGTGTTATACCTCAGTACCATTCCTCTGTGAACTCGGCAGGCAGCAGTGCTCCGGTGTCTACTGCCAACAGCACCGAGGATG
CCAGAGATGCAAAAAACGCACGTGGGGATCACGCGTCACTGGAGAATGAGAAACCGGGGACTGGGGATGTGTGCAGTGCTCCGGCTGGGAGAAACCAAAGCCCAGAGCCCAGCTCAGGCCCCAGAGGG
GAGGTGCCCCTCGCCAAGCAGCCCAGCTCACCCTCCGGAGAGGGAGATGGTGGAGAACTTTCACCACAGGGGGTGAGCAAGACACTGGATGGACCGGAGAGCAACCCCTTGGAGGTGCATGAAGAGCC
ACTCTCAGGGAAAATGGAGATCTTCACCCTTTTCAACAAACCGAAGAGCCATCAGAAGTGCCGGCAATACTACCCTGTCACCATTCCTCTCCATGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGG
ACGCCAACTGGTTAGAGCACATGAGCGACCACTTCCGGAAAGGAGGCATGCTGGTGAACGCAGTCTTCTACCTTGGAATAGTGAATGATTCCTTACATGGCTTGACAGATGGAGTATTCATCTTTGAA
GCTGTTTCCACAGAAGATAGCAAAACCATACAGGGCTATGATGCTATTGTGGTTGAACAATGGACAGTCCTGGAAGGTGTCGAAGTGCAGACAGACTACGTGCCCCTGCTGAACTCGCTGGCGGCCTA
TGGCTGGCAGCTCACCTGTGTGCTACCAACTCCCGTCGTCAAGACTACCAGCGAGGGGAGTGTATCCACCAAGCAGATTGTCTTTCTTCAGAGACCTTGTCTACCTCAGAAAATCAAGAAGAAGGAAT
CGAAGTTTCAGTGGCGATTCTCCAGAGAAGAAATGCACAACAGGCAGATGAGGAAATCAAAAGGTAAACTCAGTGCCAGAGACAAACAACAAGCAGAAGAAAATGAGAAGAACTTAGAAGACCAGTCT
TCCAAAGCTGGAGACATGGGAAACTGTGTTTCAGGACAGCAGCAGGAGGGTGGAGTCTCCGAGGAGATGAAGGGCCCTGTCCAAGAGGACAAGGGAGAACAGCTGTCCCCTGGTGGCCTGCTGTGTGG
GGTGGGTGTGGAGGGTGAGGCTGTGCAGAATGGTCCTGCCAGCCACAGCAGGGCCCTGGTGGGGATTTGCACTGGGCACTCCAATCCTGGAGAGGATGCCAGGGACGGGGATGCTGAGGAAGTCAGAG
AGCTTGGTACGGTTGAAGAAAACTGAGTCTTGGGCAATTTGTGCTAAAACTAGGTGAGTTGCCAAACCCAAGGCATCTTACCAACAGCTGGTTTGGGGGCTGGTTTCCCTGGTGTTGTGTGTTACCTA
CCCTTTGGCTTGGCTTGACCTCTCCTTGTGAGCTCACCTGAGCCCTCCCAGGGCCAGGTTCCTGACAGTGTTGGTTTTTGCACATCCACTGGAAAGGTGTCATTAATGACCCAGTGTTAGAATGCAAG
AGGTCAGGTTATTCTAGCCCTCATGGCTGAAGGCCCAGTCCTGGCTCCACCACTCCTCCAGCCAGAGGGTCTGGACCATCCAGTGCCTGTCCTCGCCACAGGGCCTCCAGGGAGCATTCGGGTCAAAT
CCATGGACACCCTGGGCTACAAACCAAGGCTGCTGTTCATCCCACATCGTGTGGGGCAGTGTCCATCCCCTGCAGCTACTTGGTGACTTAACAACTCCAGGAGCCCTGTCAGCTGCCCTCCTCCACCT
AAACCCCTTCGACTCTTCTGCTTTGACAAAGAAAATGACATTGGGGAGGGGAGGTGCTCCGCCTCCCAGCTTTTCTCAAAATAGTCCTATAGATACTGGTAATCTGGAAATGAAGAAGTAATTCTGTC
TCTGCACCTACTTTTGCAGAATGTTCAAGGAAGTATTCTGTGTTAGTATTAATGCCAAAAAGTTGTTTTTAAAGGTTTTGTACTCAGCACATCATACAAACCACATTACTTCTGTCACTTCAGGGCAT
CGGGACTGGCTGGCGCCCTTGTTATGTGCTATTTTAATCAGTGTAACATTGGTCAAGTTGTTACCCATGTATGCTGTGTTTATCATGTGTATATCGTCCAGAAAGTATTAAGGCTTTAGGTAGATGCA
ACTGGCGAACCTTGGAGAGGGAATGCTGATTGTCTTGACCAAACCCACAGCCTGTCTCTTCTCTTGTTTAGTTACTTACGGCAATAAATCATCTATGAGTTAGTGCACCGTGA

hide sequence

RefSeq Acc Id:

XM_011533530 ⟹ XP_011531832

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,513,522 (-)	NCBI

Sequence:

show sequence

CCGGGTCTCTGGCGGGTAGTGGGAACCGCGCGTGGCGCCTCCCTGCAGGTTGCTCTTTGCCGGGGCTCCGGAGCTGCCAGAGCAGCACCCCCTGGCCCGCGTCGGATGGGGACCTGGGCTGATCCTTG
GGACGCCTGGATCTTGGGCCAACTTTTTTTTGCGGGGAACGGGTGTAGGGGAGTCATTCCTGGAGCGATGTAGGGAGAGGCACTTCGGAGCAGCCTGTTGGGGGTCGTAGGCTCTGCAGGCTCAGAAG
CGCCTAGGAAGGACGCAGAGGTGGGGGAGCTTGGAGGCTACAGCTGCTGAAATGGGTTGCGGATTGAACAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAGAGGCC
TCAGGTGGAAACCAAGATAGATGTGTCCTATGAATACCGCTTCCTGGAGTTCACGACTCTGAGTGCTGCGGAGCTCCCTGGGTCCTCAGCAGTGAGGCTGGCCTCCCTGCGTGACCTGCCCGCCCAGC
TCCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGCCCTGCACCCCTTCGTGCAGCCCACCCATGAGCGGGAGAAGACGCCCCTGGAGCACATCTTTAGAGCCATCCTGATCAAGAAAACCGACAGA
TCTCAGAAAACTGATCTTCACAATGAAGGCTACATCTTGGAATTAGATTGCTGTTCCTCCTTAGACCACCCGACAGACCAGAAACTCATCCCAGAGTTCATTAAGAAGATCCAGGAGGCTGCAAGCCA
GGGCCTGAAATTCGTTGGTGTTATACCTCAGTACCATTCCTCTGTGAACTCGGCAGGCAGCAGTGCTCCGGTGTCTACTGCCAACAGCACCGAGGATGCCAGAGATGCAAAAAACGCACGTGGGGATC
ACGCGTCACTGGAGAATGAGAAACCGGGGACTGGGGATGTGTGCAGTGCTCCGGCTGGGAGAAACCAAAGCCCAGAGCCCAGCTCAGGCCCCAGAGGGGAGGTGCCCCTCGCCAAGCAGCCCAGCTCA
CCCTCCGGAGAGGGAGATGGTGGAGAACTTTCACCACAGGGGGTGAGCAAGACACTGGATGGACCGGAGAGCAACCCCTTGGAGGTGCATGAAGAGCCACTCTCAGGGAAAATGGAGATCTTCACCCT
TTTCAACAAACCGAAGAGCCATCAGAAGTGCCGGCAATACTACCCTGTCACCATTCCTCTCCATGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGGACGCCAACTGGTTAGAGCACATGAGCGACC
ACTTCCGGAAAGGAGGCATGCTGGTGAACGCAGTCTTCTACCTTGGAATAGTGAATGATTCCTTACATGGCTTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAGCAAAACCATA
CAGGGCTATGATGCTATTGTGGTTGAACAATGGACAGTCCTGGAAGGTGTCGAAGTGCAGACAGACTACGTGCCCCTGCTGAACTCGCTGGCGGCCTATGGCTGGCAGCTCACCTGTGTGCTACCAAC
TCCCGTCGTCAAGACTACCAGCGAGGGGAGTGTATCCACCAAGCAGATTGTCTTTCTTCAGAGACCTTGTCTACCTCAGAAAATCAAGAAGAAGGAATCGAAGTTTCAGTGGCGATTCTCCAGAGAAG
AAATGCACAACAGGCAGATGAGGAAATCAAAAGGTAAACTCAGTGCCAGAGACAAACAACAAGCAGAAGAAAATGAGAAGAACTTAGAAGACCAGTCTTCCAAAGCTGGAGACATGGGAAACTGTGTT
TCAGGACAGCAGCAGGAGGGTGGAGTCTCCGAGGAGATGAAGGGCCCTGTCCAAGAGGACAAGGGAGAACAGCTGTCCCCTGGTGGCCTGCTGTGTGGGGTGGGTGTGGAGGGTGAGGCTGTGCAGAA
TGGTCCTGCCAGCCACAGCAGGGCCCTGGTGGGGATTTGCACTGGGCACTCCAATCCTGGAGAGGATGCCAGGGACGGGGATGCTGAGGAAGTCAGAGAGCTTGGTACGGTTGAAGAAAACTGAGTCT
TGGGCAATTTGTGCTAAAACTAGGTGAGTTGCCAAACCCAAGGCATCTTACCAACAGCTGGTTTGGGGGCTGGTTTCCCTGGTGTTGTGTGTTACCTACCCTTTGGCTTGGCTTGACCTCTCCTTGTG
AGCTCACCTGAGCCCTCCCAGGGCCAGGTTCCTGACAGTGTTGGTTTTTGCACATCCACTGGAAAGGTGTCATTAATGACCCAGTGTTAGAATGCAAGAGGTCAGGTTATTCTAGCCCTCATGGCTGA
AGGCCCAGTCCTGGCTCCACCACTCCTCCAGCCAGAGGGTCTGGACCATCCAGTGCCTGTCCTCGCCACAGGGCCTCCAGGGAGCATTCGGGTCAAATCCATGGACACCCTGGGCTACAAACCAAGGC
TGCTGTTCATCCCACATCGTGTGGGGCAGTGTCCATCCCCTGCAGCTACTTGGTGACTTAACAACTCCAGGAGCCCTGTCAGCTGCCCTCCTCCACCTAAACCCCTTCGACTCTTCTGCTTTGACAAA
GAAAATGACATTGGGGAGGGGAGGTGCTCCGCCTCCCAGCTTTTCTCAAAATAGTCCTATAGATACTGGTAATCTGGAAATGAAGAAGTAATTCTGTCTCTGCACCTACTTTTGCAGAATGTTCAAGG
AAGTATTCTGTGTTAGTATTAATGCCAAAAAGTTGTTTTTAAAGGTTTTGTACTCAGCACATCATACAAACCACATTACTTCTGTCACTTCAGGGCATCGGGACTGGCTGGCGCCCTTGTTATGTGCT
ATTTTAATCAGTGTAACATTGGTCAAGTTGTTACCCATGTATGCTGTGTTTATCATGTGTATATCGTCCAGAAAGTATTAAGGCTTTAGGTAGATGCAACTGGCGAACCTTGGAGAGGGAATGCTGAT
TGTCTTGACCAAACCCACAGCCTGTCTCTTCTCTTGTTTAGTTACTTACGGCAATAAATCATCTATGAGTTAGTGCACCGTGA

hide sequence

RefSeq Acc Id:

XM_017006007 ⟹ XP_016861496

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,513,699 (-)	NCBI

Sequence:

show sequence

AGCGCGCCGGGCGCTGGGCGCAGCGAGCGAGAGCGCGGCGGCCGCGGGCTCCGGCGAGGGACAGACGCACCGATCGCCGGAGGGACAGACACACGACCACGCGGCGCCACCGCCCACGCCTCCACCCA
CCGGCGCCCAAGTCCTCCCCGCGCCGCCTCCTCTGTATGGCACAAACTTTCCTCCCGGGACGGAACACGCTGCCTCAGGGAGCCCGCGACCGCGCCTTCTCCTCCGCCGGTCCCATACGCTGCTGAAA
TGGGTTGCGGATTGAACAAGTTAGAGAAACGTGATGAAAAACGGCCTGGGAATATTTATTCAACTTTGAAGAGGCCTCAGGTGGAAACCAAGATAGATGTGTCCTATGAATACCGCTTCCTGGAGTTC
ACGACTCTGAGTGCTGCGGAGCTCCCTGGGTCCTCAGCAGTGAGGCTGGCCTCCCTGCGTGACCTGCCCGCCCAGCTCCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCGGCCCTGCACCCCTTCGT
GCAGCCCACCCATGAGCGGGAGAAGACGCCCCTGGAGCACATCTTTAGAGCCATCCTGATCAAGAAAACCGACAGATCTCAGAAAACTGATCTTCACAATGAAGGCTACATCTTGGAATTAGATTGCT
GTTCCTCCTTAGACCACCCGACAGACCAGAAACTCATCCCAGAGTTCATTAAGAAGATCCAGGAGGCTGCAAGCCAGGGCCTGAAATTCGTTGGTGTTATACCTCAGTACCATTCCTCTGTGAACTCG
GCAGGCAGCAGTGCTCCGGTGTCTACTGCCAACAGCACCGAGGATGCCAGAGATGCAAAAAACGCACGTGGGGATCACGCGTCACTGGAGAATGAGAAACCGGGGACTGGGGATGTGTGCAGTGCTCC
GGCTGGGAGAAACCAAAGCCCAGAGCCCAGCTCAGGCCCCAGAGGGGAGGTGCCCCTCGCCAAGCAGCCCAGCTCACCCTCCGGAGAGGGAGATGGTGGAGAACTTTCACCACAGGGGGTGAGCAAGA
CACTGGATGGACCGGAGAGCAACCCCTTGGAGGTGCATGAAGAGCCACTCTCAGGGAAAATGGAGATCTTCACCCTTTTCAACAAACCGAAGAGCCATCAGAAGTGCCGGCAATACTACCCTGTCACC
ATTCCTCTCCATGTCTCCAAGAATGGCCAGACAGTGAGCGGTTTGGACGCCAACTGGTTAGAGCACATGAGCGACCACTTCCGGAAAGGAGGCATGCTGGTGAACGCAGTCTTCTACCTTGGAATAGT
GAATGGGTGTCGAAGTGCAGACAGACTACGTGCCCCTGCTGAACTCGCTGGCGGCCTATGGCTGGCAGCTCACCTGTGTGCTACCAACTCCCGTCGTCAAGACTACCAGCGAGGGGAGTGTATCCACC
AAGCAGATTGTCTTTCTTCAGAGACCTTGTCTACCTCAGAAAATCAAGAAGAAGGAATCGAAGTTTCAGTGGCGATTCTCCAGAGAAGAAATGCACAACAGGCAGATGAGGAAATCAAAAGGTAAACT
CAGTGCCAGAGACAAACAACAAGCAGAAGAAAATGAGAAGAACTTAGAAGACCAGTCTTCCAAAGCTGGAGACATGGGAAACTGTGTTTCAGGACAGCAGCAGGAGGGTGGAGTCTCCGAGGAGATGA
AGGGCCCTGTCCAAGAGGACAAGGGAGAACAGCTGTCCCCTGGTGGCCTGCTGTGTGGGGTGGGTGTGGAGGGTGAGGCTGTGCAGAATGGTCCTGCCAGCCACAGCAGGGCCCTGGTGGGGATTTGC
ACTGGGCACTCCAATCCTGGAGAGGATGCCAGGGACGGGGATGCTGAGGAAGTCAGAGAGCTTGGTACGGTTGAAGAAAACTGAGTCTTGGGCAATTTGTGCTAAAACTAGGTGAGTTGCCAAACCCA
AGGCATCTTACCAACAGCTGGTTTGGGGGCTGGTTTCCCTGGTGTTGTGTGTTACCTACCCTTTGGCTTGGCTTGACCTCTCCTTGTGAGCTCACCTGAGCCCTCCCAGGGCCAGGTTCCTGACAGTG
TTGGTTTTTGCACATCCACTGGAAAGGTGTCATTAATGACCCAGTGTTAGAATGCAAGAGGTCAGGTTATTCTAGCCCTCATGGCTGAAGGCCCAGTCCTGGCTCCACCACTCCTCCAGCCAGAGGGT
CTGGACCATCCAGTGCCTGTCCTCGCCACAGGGCCTCCAGGGAGCATTCGGGTCAAATCCATGGACACCCTGGGCTACAAACCAAGGCTGCTGTTCATCCCACATCGTGTGGGGCAGTGTCCATCCCC
TGCAGCTACTTGGTGACTTAACAACTCCAGGAGCCCTGTCAGCTGCCCTCCTCCACCTAAACCCCTTCGACTCTTCTGCTTTGACAAAGAAAATGACATTGGGGAGGGGAGGTGCTCCGCCTCCCAGC
TTTTCTCAAAATAGTCCTATAGATACTGGTAATCTGGAAATGAAGAAGTAATTCTGTCTCTGCACCTACTTTTGCAGAATGTTCAAGGAAGTATTCTGTGTTAGTATTAATGCCAAAAAGTTGTTTTT
AAAGGTTTTGTACTCAGCACATCATACAAACCACATTACTTCTGTCACTTCAGGGCATCGGGACTGGCTGGCGCCCTTGTTATGTGCTATTTTAATCAGTGTAACATTGGTCAAGTTGTTACCCATGT
ATGCTGTGTTTATCATGTGTATATCGTCCAGAAAGTATTAAGGCTTTAGGTAGATGCAACTGGCGAACCTTGGAGAGGGAATGCTGATTGTCTTGACCAAACCCACAGCCTGTCTCTTCTCTTGTTTA
GTTACTTACGGCAATAAATCATCTATGAGTTAGTGCACCGTGA

hide sequence

RefSeq Acc Id:

XM_047447779 ⟹ XP_047303735

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,472,794 (-)	NCBI

RefSeq Acc Id:

XM_047447780 ⟹ XP_047303736

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,513,522 (-)	NCBI

RefSeq Acc Id:

XM_047447781 ⟹ XP_047303737

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,472,799 (-)	NCBI

RefSeq Acc Id:

XM_047447783 ⟹ XP_047303739

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,315,845 - 16,513,699 (-)	NCBI

RefSeq Acc Id:

XM_054345823 ⟹ XP_054201798

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	3	16,317,057 - 16,473,932 (-)	NCBI

RefSeq Acc Id:

XM_054345824 ⟹ XP_054201799

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	3	16,317,057 - 16,514,836 (-)	NCBI

RefSeq Acc Id:

XM_054345825 ⟹ XP_054201800

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	3	16,317,057 - 16,514,044 (-)	NCBI

RefSeq Acc Id:

XM_054345826 ⟹ XP_054201801

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	3	16,317,057 - 16,514,044 (-)	NCBI

RefSeq Acc Id:

XM_054345827 ⟹ XP_054201802

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	3	16,317,057 - 16,514,347 (-)	NCBI

RefSeq Acc Id:

XM_054345828 ⟹ XP_054201803

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	3	16,317,057 - 16,473,937 (-)	NCBI

RefSeq Acc Id:

XM_054345829 ⟹ XP_054201804

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	3	16,317,057 - 16,514,836 (-)	NCBI

RefSeq Acc Id:

XM_054345830 ⟹ XP_054201805

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	3	16,317,057 - 16,514,836 (-)	NCBI


Protein RefSeqs	NP_055965	(Get FASTA)	NCBI Sequence Viewer
	XP_005265042	(Get FASTA)	NCBI Sequence Viewer
	XP_005265043	(Get FASTA)	NCBI Sequence Viewer
	XP_006713132	(Get FASTA)	NCBI Sequence Viewer
	XP_011531832	(Get FASTA)	NCBI Sequence Viewer
	XP_016861496	(Get FASTA)	NCBI Sequence Viewer
	XP_047303735	(Get FASTA)	NCBI Sequence Viewer
	XP_047303736	(Get FASTA)	NCBI Sequence Viewer
	XP_047303737	(Get FASTA)	NCBI Sequence Viewer
	XP_047303739	(Get FASTA)	NCBI Sequence Viewer
	XP_054201798	(Get FASTA)	NCBI Sequence Viewer
	XP_054201799	(Get FASTA)	NCBI Sequence Viewer
	XP_054201800	(Get FASTA)	NCBI Sequence Viewer
	XP_054201801	(Get FASTA)	NCBI Sequence Viewer
	XP_054201802	(Get FASTA)	NCBI Sequence Viewer
	XP_054201803	(Get FASTA)	NCBI Sequence Viewer
	XP_054201804	(Get FASTA)	NCBI Sequence Viewer
	XP_054201805	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH06400	(Get FASTA)	NCBI Sequence Viewer
	AAH14032	(Get FASTA)	NCBI Sequence Viewer
	AAH32349	(Get FASTA)	NCBI Sequence Viewer
	AAH51336	(Get FASTA)	NCBI Sequence Viewer
	AAH69209	(Get FASTA)	NCBI Sequence Viewer
	AAH98270	(Get FASTA)	NCBI Sequence Viewer
	AAI00668	(Get FASTA)	NCBI Sequence Viewer
	AAI00670	(Get FASTA)	NCBI Sequence Viewer
	AAI21796	(Get FASTA)	NCBI Sequence Viewer
	AAO91814	(Get FASTA)	NCBI Sequence Viewer
	BAA07644	(Get FASTA)	NCBI Sequence Viewer
	BAG62640	(Get FASTA)	NCBI Sequence Viewer
	BAG64789	(Get FASTA)	NCBI Sequence Viewer
	EAW64273	(Get FASTA)	NCBI Sequence Viewer
	EAW64274	(Get FASTA)	NCBI Sequence Viewer
	EAW64275	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000334153
	ENSP00000334153.4
	ENSP00000403926
GenBank Protein	Q14699	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_055965 ⟸ NM_015150

- UniProtKB:

Q5JB48 (UniProtKB/Swiss-Prot), Q4QQI7 (UniProtKB/Swiss-Prot), Q496Y2 (UniProtKB/Swiss-Prot), Q0D2G0 (UniProtKB/Swiss-Prot), Q7Z7P2 (UniProtKB/Swiss-Prot), Q14699 (UniProtKB/Swiss-Prot), G3XAJ6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLASLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNEGYILELDC
CSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSK
TLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVSTEDSKTIQGYDAIVVEQWTVLEGV
EVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPV
QEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN

hide sequence

RefSeq Acc Id:	XP_005265042 ⟸ XM_005264985
- Peptide Label:	isoform X2
- UniProtKB:	Q5JB48 (UniProtKB/Swiss-Prot), Q4QQI7 (UniProtKB/Swiss-Prot), Q496Y2 (UniProtKB/Swiss-Prot), Q0D2G0 (UniProtKB/Swiss-Prot), Q7Z7P2 (UniProtKB/Swiss-Prot), Q14699 (UniProtKB/Swiss-Prot), G3XAJ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLASLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNEGYILELDC CSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSK TLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVSTEDSKTIQGYDAIVVEQWTVLEGV EVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPV QEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN hide sequence

RefSeq Acc Id:	XP_005265043 ⟸ XM_005264986
- Peptide Label:	isoform X2
- UniProtKB:	Q5JB48 (UniProtKB/Swiss-Prot), Q4QQI7 (UniProtKB/Swiss-Prot), Q496Y2 (UniProtKB/Swiss-Prot), Q0D2G0 (UniProtKB/Swiss-Prot), Q7Z7P2 (UniProtKB/Swiss-Prot), Q14699 (UniProtKB/Swiss-Prot), G3XAJ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLASLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNEGYILELDC CSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSK TLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVSTEDSKTIQGYDAIVVEQWTVLEGV EVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPV QEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN hide sequence

RefSeq Acc Id:	XP_006713132 ⟸ XM_006713069
- Peptide Label:	isoform X2
- UniProtKB:	Q5JB48 (UniProtKB/Swiss-Prot), Q4QQI7 (UniProtKB/Swiss-Prot), Q496Y2 (UniProtKB/Swiss-Prot), Q0D2G0 (UniProtKB/Swiss-Prot), Q7Z7P2 (UniProtKB/Swiss-Prot), Q14699 (UniProtKB/Swiss-Prot), G3XAJ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLASLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNEGYILELDC CSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSK TLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVSTEDSKTIQGYDAIVVEQWTVLEGV EVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPV QEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN hide sequence

RefSeq Acc Id:	XP_011531832 ⟸ XM_011533530
- Peptide Label:	isoform X2
- UniProtKB:	Q5JB48 (UniProtKB/Swiss-Prot), Q4QQI7 (UniProtKB/Swiss-Prot), Q496Y2 (UniProtKB/Swiss-Prot), Q0D2G0 (UniProtKB/Swiss-Prot), Q7Z7P2 (UniProtKB/Swiss-Prot), Q14699 (UniProtKB/Swiss-Prot), G3XAJ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCGLNKLEKRDEKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLASLRDLPAQLLELYQQGFSLAALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNEGYILELDC CSSLDHPTDQKLIPEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHASLENEKPGTGDVCSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSK TLDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLDANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEAVSTEDSKTIQGYDAIVVEQWTVLEGV EVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGSVSTKQIVFLQRPCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAGDMGNCVSGQQQEGGVSEEMKGPV QEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRALVGICTGHSNPGEDARDGDAEEVRELGTVEEN hide sequence

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q14699-F1-model_v2	AlphaFold	Q14699	1-578	view protein structure

RGD ID:

6812380

Promoter ID:

HG_ACW:53063

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

K562

Transcripts:

RFTN1.NAPR07-UNSPLICED

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	3	16,330,036 - 16,330,536 (-)	MPROMDB

RGD ID:

6801523

Promoter ID:

HG_KWN:43963

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lymphoblastoid

Transcripts:

OTTHUMT00000346910

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	3	16,387,216 - 16,388,382 (-)	MPROMDB

RGD ID:

6863724

Promoter ID:

EPDNEW_H5027

Type:

multiple initiation site

Name:

RFTN1_3

Description:

raftlin, lipid raft linker 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H5028 EPDNEW_H5029

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,482,862 - 16,482,922	EPDNEW

RGD ID:

6801527

Promoter ID:

HG_KWN:43965

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lymphoblastoid

Transcripts:

OTTHUMT00000347266

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	3	16,489,041 - 16,489,687 (-)	MPROMDB

RGD ID:

6801525

Promoter ID:

HG_KWN:43966

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

K562, Lymphoblastoid

Transcripts:

OTTHUMT00000346909

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	3	16,499,246 - 16,500,087 (-)	MPROMDB

RGD ID:

6801528

Promoter ID:

HG_KWN:43967

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lymphoblastoid

Transcripts:

OTTHUMT00000346911

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	3	16,500,941 - 16,502,187 (-)	MPROMDB

RGD ID:

6863726

Promoter ID:

EPDNEW_H5028

Type:

initiation region

Name:

RFTN1_2

Description:

raftlin, lipid raft linker 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H5027 EPDNEW_H5029

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,513,519 - 16,513,579	EPDNEW

RGD ID:

6863728

Promoter ID:

EPDNEW_H5029

Type:

initiation region

Name:

RFTN1_1

Description:

raftlin, lipid raft linker 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H5027 EPDNEW_H5028

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	3	16,513,699 - 16,513,759	EPDNEW

RGD ID:

6801526

Promoter ID:

HG_KWN:43968

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_2Hour, K562, Lymphoblastoid, NB4

Transcripts:

NM_015150, OTTHUMT00000346912, OTTHUMT00000346913, OTTHUMT00000347263, OTTHUMT00000347264, OTTHUMT00000347265

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	3	16,529,956 - 16,531,532 (-)	MPROMDB

Database	Acc Id	Source(s)
COSMIC	RFTN1	COSMIC
Ensembl Genes	ENSG00000131378	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000334133	ENTREZGENE
	ENST00000334133.9	UniProtKB/Swiss-Prot
	ENST00000432519	ENTREZGENE
GTEx	ENSG00000131378	GTEx
HGNC ID	HGNC:30278	ENTREZGENE
Human Proteome Map	RFTN1	Human Proteome Map
InterPro	Raftlin	UniProtKB/Swiss-Prot
KEGG Report	hsa:23180	UniProtKB/Swiss-Prot
NCBI Gene	23180	ENTREZGENE
OMIM	618210	OMIM
PANTHER	PTHR17601	UniProtKB/Swiss-Prot
	RAFTLIN	UniProtKB/Swiss-Prot
Pfam	Raftlin	UniProtKB/Swiss-Prot
PharmGKB	PA162401206	PharmGKB
UniProt	C9JHG2_HUMAN	UniProtKB/TrEMBL
	C9JRN3_HUMAN	UniProtKB/TrEMBL
	C9JWQ9_HUMAN	UniProtKB/TrEMBL
	F8WAR1_HUMAN	UniProtKB/TrEMBL
	G3XAJ6	ENTREZGENE, UniProtKB/TrEMBL
	Q0D2G0	ENTREZGENE
	Q14699	ENTREZGENE
	Q496Y2	ENTREZGENE
	Q4QQI7	ENTREZGENE
	Q5JB48	ENTREZGENE
	Q7Z7P2	ENTREZGENE
	Q8N5I0_HUMAN	UniProtKB/TrEMBL
	Q9BRA3_HUMAN	UniProtKB/TrEMBL
	RFTN1_HUMAN	UniProtKB/Swiss-Prot
	U3KPZ2_HUMAN	UniProtKB/TrEMBL
UniProt Secondary	Q0D2G0	UniProtKB/Swiss-Prot
	Q496Y2	UniProtKB/Swiss-Prot
	Q4QQI7	UniProtKB/Swiss-Prot
	Q5JB48	UniProtKB/Swiss-Prot
	Q7Z7P2	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar