RFTN1 (raftlin, lipid raft linker 1)

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Gene: RFTN1 (raftlin, lipid raft linker 1) Canis lupus familiaris

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Symbol:

RFTN1

Name:

raftlin, lipid raft linker 1

RGD ID:

12217902

Description:

ENCODES a protein that exhibits double-stranded RNA binding (inferred); INVOLVED IN dsRNA transport (ortholog); positive regulation of interleukin-17 production (ortholog); protein localization to membrane raft (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); glaucoma (ortholog); FOUND IN cytoplasm (inferred); endosome (inferred); membrane raft (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

raftlin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	26,272,103 - 26,472,610 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	26,282,392 - 26,472,536 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	26,247,350 - 26,447,817 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	26,773,327 - 26,973,915 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	26,773,112 - 26,973,909 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	26,474,319 - 26,674,595 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	26,535,808 - 26,736,282 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	26,784,871 - 26,985,542 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3p deletion syndrome (ISO)

glaucoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell receptor signaling pathway (IEA)

dsRNA transport (IEA,ISO)

membrane raft assembly (IEA)

positive regulation of growth rate (IEA)

positive regulation of interleukin-17 production (ISO)

protein localization to membrane raft (ISO)

protein transport into membrane raft (ISO)

response to exogenous dsRNA (IEA,ISO)

T cell antigen processing and presentation (ISO)

T cell receptor signaling pathway (ISO)

toll-like receptor 3 signaling pathway (IEA,ISO)

Cellular Component

cytoplasm (IEA)

endosome (IEA)

membrane raft (IEA)

plasma membrane (IEA)

protein-containing complex (IEA)

Molecular Function

double-stranded RNA binding (IEA)

References

Genomics

Comparative Map Data

RFTN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	26,272,103 - 26,472,610 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	26,282,392 - 26,472,536 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	26,247,350 - 26,447,817 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	26,773,327 - 26,973,915 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	26,773,112 - 26,973,909 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	26,474,319 - 26,674,595 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	26,535,808 - 26,736,282 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	26,784,871 - 26,985,542 (+)	NCBI		UU_Cfam_GSD_1.0

RFTN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	16,315,845 - 16,513,699 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	16,313,574 - 16,514,026 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	16,357,352 - 16,555,206 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	16,332,356 - 16,530,226 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	16,296,470 - 16,494,283 (-)	NCBI		Celera
Cytogenetic Map	3	p24.3	NCBI
HuRef	3	16,290,978 - 16,488,996 (-)	NCBI		HuRef
CHM1_1	3	16,308,420 - 16,506,893 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	16,317,057 - 16,514,836 (-)	NCBI		T2T-CHM13v2.0

Rftn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	50,300,287 - 50,497,525 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	50,299,285 - 50,497,702 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	49,993,258 - 50,190,497 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	49,992,257 - 50,190,674 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	50,132,632 - 50,329,822 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	49,458,874 - 49,656,064 (-)	NCBI		MGSCv36	mm8
Celera	17	53,430,090 - 53,626,629 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	25.86	NCBI

Rftn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	18,302,143 - 18,499,819 (+)	NCBI		GRCr8
mRatBN7.2	9	10,804,611 - 11,002,084 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	10,804,611 - 11,002,084 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	19,306,013 - 19,502,552 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	24,372,610 - 24,569,138 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	22,754,195 - 22,950,721 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	12,740,885 - 12,942,358 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	12,740,885 - 12,942,358 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	11,679,882 - 11,880,237 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	6,008,948 - 6,207,477 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	8,582,887 - 8,778,558 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

Rftn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955430	8,603,401 - 8,779,896 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955430	8,605,057 - 8,801,187 (-)	NCBI	ChiLan1.0	ChiLan1.0

RFTN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	16,301,250 - 16,500,922 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	16,306,013 - 16,505,411 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	16,241,255 - 16,441,402 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	16,578,092 - 16,778,464 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	16,578,092 - 16,778,464 (-)	Ensembl	panpan1.1		panPan2

Rftn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	175,980,661 - 176,179,125 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	9,117,247 - 9,317,704 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	9,119,234 - 9,317,696 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RFTN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	3,454,454 - 3,674,998 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	3,454,448 - 3,675,072 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	3,744,156 - 3,861,922 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RFTN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	61,159,573 - 61,290,342 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	61,159,930 - 61,289,965 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	34,169,257 - 34,371,665 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rftn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624821	1,562,778 - 1,751,345 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624821	1,561,845 - 1,763,654 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RFTN1
2299 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014106687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038432217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038432218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038457156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038507518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038507519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038570759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038570760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038634947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038634948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000009467 ⟹ ENSCAFP00000008787

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	23	26,282,392 - 26,471,626 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000060679 ⟹ ENSCAFP00000062844

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	23	26,282,392 - 26,472,536 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845040025 ⟹ ENSCAFP00845031342

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	26,773,112 - 26,973,909 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845040116 ⟹ ENSCAFP00845031415

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	26,773,992 - 26,973,909 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845040202 ⟹ ENSCAFP00845031487

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	26,778,756 - 26,973,909 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845040313 ⟹ ENSCAFP00845031573

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	26,783,267 - 26,973,909 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845040406 ⟹ ENSCAFP00845031639

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	26,802,416 - 26,973,909 (+)	Ensembl

RefSeq Acc Id:

XM_014106687 ⟹ XP_013962162

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	23	26,272,103 - 26,472,610 (+)	NCBI
Dog10K_Boxer_Tasha	23	26,247,350 - 26,447,817 (+)	NCBI

Sequence:

show sequence

CTCGAGTTGCAGGCCAAGATGGCTCGCCAGATCTTCTCCTACCTTCTGGACACCTGAAGTGGGT
GGAATAGGGTGTGGCAAGGAGCCGGTGGCATCATCCCCCTCGTTAATCACGAACTCGGCTGCTG
AAATGGGTTGCGGCTTGAACAAGTTAGAGAAACGCGATGACAAACGGCCTGGAAATATCTATTC
AACTTTAAAGAGGCCTCAGGTGGAAACCAAGATAGATGTGTCCTACGAATACCGCTTCCTGGAG
TTCACTACCCTGAGTGCTGCGGAGCTCCCGAGGTCCTCAGCGGTGAGGCTGGCCTCCCTGCATG
ACCTGCCCGCCCAGCTCCTGGAGCTGTACCAACAGGGCTTCTCACTAGTGGCACTGCACCCCTT
CGTGCAGCCAACCCATGAACGGGAGAAGACACCCCTCGAGCACATCTTCAGGGCCATCCTGATC
AAGAAAACTGACAGATCTCAGAAAAGTGATCTCCACAATGAACGCTACATCTTGGAATTAGATT
GCTGTTCCTCCTTAGACCACCTGACAGGCCAAAAACTCATCCCAGAGTTCATTAAGAAGATCCA
GGATGCTGCAAGTCAGGGCCTGAAGTTTGTCGGTGTCATACCTCAGTACGGTTGCCCTGCGAAG
CCAGCAGCCAGCAGCCCCCCAGCAGACACCAGAGATGCGGAAAAGGAGCCTGGCAGGTGTGGGG
GTGATGAGAAGCCAGGTGCACCAGCAGGGACCCACAGCAGCCAGGAGCCAGGCCAGGGCCCCGG
AGGGGAGACGCCCATTGCTGAGCAGCCCAGCTTGTCCTCAGGAGATGGGGATGGTGCAGCATTG
TCACCACATGGGGTGAACAAGACTTCGGATGGGCCGGATGGTGACCTCTTGGAAGTGCATGAGG
AGCCACTTTCGGGAAAAATGGAGATCCTCACCCTTTTCAACAAACCGAAGAGCCAGCAGAAGTG
CCGGCAATACTATCCCGTCAGCATTCCTCTCCGAGTCTCCAAGAATGGCCAGACGGTGAGCAGT
TTGGACGCCAACTGGTTGGAGCACATGAGTGACCACTTCCGGAAAGGAGGCATGCTGGTGAATG
CAGTCTTCTACCTTGGCATGGTCAATGATTCCTTACACAGCCTGACAGATGGAGTATTCATCTT
TGAAGCTGTTTCCACAGAAGATAGCAAAACCATGCAGGCCTATGATGCTATTGTTGTCGAACAA
TGGACAGTCCTGGAAGGTGTCGAGGTGCAGACGGACTACGTGCCCCTGCTGAACTCCCTGGCGG
CCTATGGCTGGCAGCTCACCTGTGTGCTACCAACTCCTGTCATCAAGACTACCAGGGAGGGGAA
TGTGTCCACCAAGCAGATCGTCTTTCTTCAGAGACCGTGTCTACCTCAGAAAATGAAGAAGAAG
GAATCAAAGTTCCAGTGGCGATTCTCCCGAGAAGACATGCACAGCAGGCAGATGAGGAAATCCA
AAGGTAAACTCAGCGCCAGAGACAAGCGACAAGCAGAAGAAAACGAGAAGAATTTAGAAGACCA
GTTTTCCAAAGCTGGAGACGTGGGAAACTGTGTGCCAGGCCCGCATCAGGAGGACGAGGCCTCT
GAGGAGTTGAAGGTCCCCATCCAGGATGTCATCGAAGGAAAGCAGTGTCCCGAGCAGCTGTGTG
TAGAGGGTGGGGCTGTGCAGAATGGTCCAGCTGGACCCTGCAGGGCCCCCGCGGGGGGCTGTGC
TGAGCACCCCCATCCCAGGGAGGAGGCCGGGGAGGGAGGTGCCGAGGAGGGGGCTGCAGAGCCT
GCCACCGTGGAAGACAATTGAGTCCAGTGTTGGTGTTGAAAGCCTGATGAGCTGGCCGACCCGA
GGCTCCATGCTGGTGTCCAGGCGGGGGGCTGGTTCGCCCCAGTGTCACGTGTTACCCTTTGGCT
TGGCTTGACCTCTTCTCGTGAGCTCACCCGGGTCCTCCCGAGGGCCGGGTCCCTGACAGTGTTG
GTCTCTGCACATCCATTAGAAATGTGTCGTACTGCCCCAGTGTTAGAATGCAAGAGGTCAAGTT
ATTTCTCCGTCCGTTGCCCAGTCCCATGGGAGGGACTAGAACATCCAGTGCCTGTGTCCACCCC
CACGGTCTCCAGGGTGCATTCGAGTCAAGTCCATCCTTGGGCGTCCCTGGCTCCAAACCAAGGC
TGTTTGTTGTTCATCCCCACCCCATGCCCACCCACTGAGGCCCTGTCCATCCCCTGCTGCTCTC
TGCAGCTACTTGGTGACATTACAGCCCCTGGAGGCCATCAGGTGCCCTTCTCCATCTCAACCCC
ACAGACCCTGCTGCTTTGGCAAAGAAAATGAGGAAATGACAGCGGGGAGGGGAGGTGCCCCACC
TCCTGGCTTTTTCAAAGTATTCCCATAGATACTGGTAATCTGGAAGTGAAGAGGTAATGCTGTG
TGTGCACCTGCTCTTGCAGAATGTCCAAGAAAGTATTCTGTATTAGTATTAATGCCAAAAATTT
TTTAAGGGTTTTGTACTCAGCACATCGTATGAACACCCGTTCCTTCTGTCATTTCAGGGCAACC
CGACCAGTCAGGAGCCCTTGTTACGTGCTATTTTCATCAGTGTATCATTGGCCAAGTTGTTTCC
ATGTATGCTATCACGTGTTTATATTGTCCAGAAAGTATTGTTAAGGCTTTAAGTAGATGCAACT
GGCAAACTATGGAGAGAGAATGCCGACTGTCTTGACCCAAGCAACAGCCTGTCTCTTCTCTTTC
TTGTTTAGTTACTTAAAGCAATAAATCATCTATGAGTTTAGTGTA

hide sequence

RefSeq Acc Id:

XM_038432217 ⟹ XP_038288145

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	26,774,074 - 26,973,915 (+)	NCBI

RefSeq Acc Id:

XM_038432218 ⟹ XP_038288146

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	26,773,327 - 26,973,915 (+)	NCBI

RefSeq Acc Id:

XM_038457156 ⟹ XP_038313084

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	23	26,248,097 - 26,447,817 (+)	NCBI

RefSeq Acc Id:

XM_038507518 ⟹ XP_038363446

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	23	26,475,060 - 26,674,595 (+)	NCBI

RefSeq Acc Id:

XM_038507519 ⟹ XP_038363447

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	23	26,474,319 - 26,674,595 (+)	NCBI

RefSeq Acc Id:

XM_038570759 ⟹ XP_038426687

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	23	26,785,606 - 26,985,542 (+)	NCBI

RefSeq Acc Id:

XM_038570760 ⟹ XP_038426688

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	23	26,784,871 - 26,985,542 (+)	NCBI

RefSeq Acc Id:

XM_038634947 ⟹ XP_038490875

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	23	26,536,555 - 26,736,282 (+)	NCBI

RefSeq Acc Id:

XM_038634948 ⟹ XP_038490876

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	23	26,535,808 - 26,736,282 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013962162	(Get FASTA)	NCBI Sequence Viewer
	XP_038288145	(Get FASTA)	NCBI Sequence Viewer
	XP_038288146	(Get FASTA)	NCBI Sequence Viewer
	XP_038313084	(Get FASTA)	NCBI Sequence Viewer
	XP_038363446	(Get FASTA)	NCBI Sequence Viewer
	XP_038363447	(Get FASTA)	NCBI Sequence Viewer
	XP_038426687	(Get FASTA)	NCBI Sequence Viewer
	XP_038426688	(Get FASTA)	NCBI Sequence Viewer
	XP_038490875	(Get FASTA)	NCBI Sequence Viewer
	XP_038490876	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000008787.2
	ENSCAFP00000062844.2
	ENSCAFP00000067706.1
	ENSCAFP00000074137.1
	ENSCAFP00000074227.1
	ENSCAFP00030039258.1
	ENSCAFP00030039284.1
	ENSCAFP00030039308.1
	ENSCAFP00030039335.1
	ENSCAFP00040038125.1
	ENSCAFP00040038145.1
	ENSCAFP00040038175.1
	ENSCAFP00040038219.1
	ENSCAFP00845031342.1
	ENSCAFP00845031415
	ENSCAFP00845031415.1
	ENSCAFP00845031487.1
	ENSCAFP00845031573
	ENSCAFP00845031573.1
	ENSCAFP00845031639.1

RefSeq Acc Id:

XP_013962162 ⟸ XM_014106687

- UniProtKB:

A0A8C0LUH4 (UniProtKB/TrEMBL), A0A8C0TNM4 (UniProtKB/TrEMBL), A0A8I3PS16 (UniProtKB/TrEMBL), A0A8I3PSF5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGCGLNKLEKRDDKRPGNIYSTLKRPQVETKIDVSYEYRFLEFTTLSAAELPRSSAVRLASLHD
LPAQLLELYQQGFSLVALHPFVQPTHEREKTPLEHIFRAILIKKTDRSQKSDLHNERYILELDC
CSSLDHLTGQKLIPEFIKKIQDAASQGLKFVGVIPQYGCPAKPAASSPPADTRDAEKEPGRCGG
DEKPGAPAGTHSSQEPGQGPGGETPIAEQPSLSSGDGDGAALSPHGVNKTSDGPDGDLLEVHEE
PLSGKMEILTLFNKPKSQQKCRQYYPVSIPLRVSKNGQTVSSLDANWLEHMSDHFRKGGMLVNA
VFYLGMVNDSLHSLTDGVFIFEAVSTEDSKTMQAYDAIVVEQWTVLEGVEVQTDYVPLLNSLAA
YGWQLTCVLPTPVIKTTREGNVSTKQIVFLQRPCLPQKMKKKESKFQWRFSREDMHSRQMRKSK
GKLSARDKRQAEENEKNLEDQFSKAGDVGNCVPGPHQEDEASEELKVPIQDVIEGKQCPEQLCV
EGGAVQNGPAGPCRAPAGGCAEHPHPREEAGEGGAEEGAAEPATVEDN

hide sequence

Ensembl Acc Id:

ENSCAFP00000062844 ⟸ ENSCAFT00000060679

Ensembl Acc Id:

ENSCAFP00000008787 ⟸ ENSCAFT00000009467

RefSeq Acc Id:

XP_038363447 ⟸ XM_038507519

RefSeq Acc Id:

XP_038363446 ⟸ XM_038507518

RefSeq Acc Id:

XP_038490876 ⟸ XM_038634948

RefSeq Acc Id:

XP_038490875 ⟸ XM_038634947

RefSeq Acc Id:	XP_038288146 ⟸ XM_038432218
- UniProtKB:	A0A8C0LUH4 (UniProtKB/TrEMBL), A0A8C0TNM4 (UniProtKB/TrEMBL), A0A8I3PS16 (UniProtKB/TrEMBL), A0A8I3PSF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038288145 ⟸ XM_038432217
- UniProtKB:	A0A8C0LUH4 (UniProtKB/TrEMBL), A0A8C0TNM4 (UniProtKB/TrEMBL), A0A8I3PS16 (UniProtKB/TrEMBL), A0A8I3PSF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038313084 ⟸ XM_038457156
- UniProtKB:	A0A8C0LUH4 (UniProtKB/TrEMBL), A0A8C0TNM4 (UniProtKB/TrEMBL), A0A8I3PS16 (UniProtKB/TrEMBL), A0A8I3PSF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038426688 ⟸ XM_038570760
- UniProtKB:	A0A8C0LUH4 (UniProtKB/TrEMBL), A0A8C0TNM4 (UniProtKB/TrEMBL), A0A8I3PS16 (UniProtKB/TrEMBL), A0A8I3PSF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038426687 ⟸ XM_038570759
- UniProtKB:	A0A8C0LUH4 (UniProtKB/TrEMBL), A0A8C0TNM4 (UniProtKB/TrEMBL), A0A8I3PS16 (UniProtKB/TrEMBL), A0A8I3PSF5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845031487 ⟸ ENSCAFT00845040202

Ensembl Acc Id:

ENSCAFP00845031573 ⟸ ENSCAFT00845040313

Ensembl Acc Id:

ENSCAFP00845031639 ⟸ ENSCAFT00845040406

Ensembl Acc Id:

ENSCAFP00845031415 ⟸ ENSCAFT00845040116

Ensembl Acc Id:

ENSCAFP00845031342 ⟸ ENSCAFT00845040025

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000005873	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030024442	UniProtKB/TrEMBL
	ENSCAFG00040023504	UniProtKB/TrEMBL
	ENSCAFG00845022667	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000009467.4	UniProtKB/TrEMBL
	ENSCAFT00000060679.2	UniProtKB/TrEMBL
	ENSCAFT00000095978.1	UniProtKB/TrEMBL
	ENSCAFT00000100449.1	UniProtKB/TrEMBL
	ENSCAFT00000104709.1	UniProtKB/TrEMBL
	ENSCAFT00030044957.1	UniProtKB/TrEMBL
	ENSCAFT00030044989.1	UniProtKB/TrEMBL
	ENSCAFT00030045019.1	UniProtKB/TrEMBL
	ENSCAFT00030045049.1	UniProtKB/TrEMBL
	ENSCAFT00040043697.1	UniProtKB/TrEMBL
	ENSCAFT00040043716.1	UniProtKB/TrEMBL
	ENSCAFT00040043749.1	UniProtKB/TrEMBL
	ENSCAFT00040043796.1	UniProtKB/TrEMBL
	ENSCAFT00845040025.1	UniProtKB/TrEMBL
	ENSCAFT00845040116	ENTREZGENE
	ENSCAFT00845040116.1	UniProtKB/TrEMBL
	ENSCAFT00845040202.1	UniProtKB/TrEMBL
	ENSCAFT00845040313	ENTREZGENE
	ENSCAFT00845040313.1	UniProtKB/TrEMBL
	ENSCAFT00845040406.1	UniProtKB/TrEMBL
InterPro	Raftlin	UniProtKB/TrEMBL
KEGG Report	cfa:485653	UniProtKB/TrEMBL
NCBI Gene	RFTN1	ENTREZGENE
PANTHER	PTHR17601	UniProtKB/TrEMBL
	RAFTLIN	UniProtKB/TrEMBL
Pfam	Raftlin	UniProtKB/TrEMBL
UniProt	A0A8C0LUH4	ENTREZGENE
	A0A8C0PC20_CANLF	UniProtKB/TrEMBL
	A0A8C0PJU5_CANLF	UniProtKB/TrEMBL
	A0A8C0PNA3_CANLF	UniProtKB/TrEMBL
	A0A8C0TNM4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TQ91_CANLF	UniProtKB/TrEMBL
	A0A8I3PGE0_CANLF	UniProtKB/TrEMBL
	A0A8I3PJF7_CANLF	UniProtKB/TrEMBL
	A0A8I3PS16	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PSF5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S623_CANLF	UniProtKB/TrEMBL
	A0A8P0PGD4_CANLF	UniProtKB/TrEMBL
	A0A8P0PRR1_CANLF	UniProtKB/TrEMBL
	A0A8P0TSQ0_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:45500	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar