WSCD1 (WSC domain containing 1) - Rat Genome Database

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Gene: WSCD1 (WSC domain containing 1) Homo sapiens
Analyze
Symbol: WSCD1
Name: WSC domain containing 1
RGD ID: 1603698
HGNC Page HGNC:29060
Description: Predicted to enable sulfotransferase activity. Predicted to be located in Golgi membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: KIAA0523; sialate:O-sulfotransferase 1; WSC domain-containing protein 1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,069,116 - 6,124,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,057,807 - 6,124,427 (+)EnsemblGRCh38hg38GRCh38
GRCh37175,972,436 - 6,027,747 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,914,658 - 5,968,471 (+)NCBINCBI36Build 36hg18NCBI36
Celera175,989,799 - 6,043,603 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef175,875,040 - 5,919,106 (+)NCBIHuRef
CHM1_1175,983,259 - 6,037,060 (+)NCBICHM1_1
T2T-CHM13v2.0175,963,314 - 6,018,611 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WSCD1Humandevelopmental and epileptic encephalopathy 25  IAGPRGD:1564435078554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathy, 25ClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WSCD1HumanLiver Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19233941
WSCD1Humanpre-malignant neoplasm  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19233941

1 to 20 of 75 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WSCD1Human17beta-estradiol decreases expressionISORGD:13178596480464Estradiol results in decreased expression of WSCD1 mRNACTDPMID:39298647
WSCD1Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:13178596480464[Tetrachlorodibenzodioxin co-treated with Lipopolysaccharides] results in increased methylation of WSCD1 geneCTDPMID:21212295
WSCD1Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide] results in increased expression of WSCD1 mRNACTDPMID:29704546
WSCD1Human2,3,7,8-tetrachlorodibenzodioxine increases methylationISORGD:13178596480464Tetrachlorodibenzodioxin results in increased methylation of WSCD1 geneCTDPMID:21212295
WSCD1Human2,3,7,8-tetrachlorodibenzodioxine decreases methylationISORGD:13178596480464Tetrachlorodibenzodioxin results in decreased methylation of WSCD1 geneCTDPMID:21212295
WSCD1Human4,4'-sulfonyldiphenol decreases expressionISORGD:13178596480464bisphenol S results in decreased expression of WSCD1 mRNACTDPMID:30951980
WSCD1Human6-propyl-2-thiouracil decreases expressionISORGD:13082126480464Propylthiouracil results in decreased expression of WSCD1 mRNACTDPMID:24780913
WSCD1Human6-propyl-2-thiouracil increases expressionISORGD:13082126480464Propylthiouracil results in increased expression of WSCD1 mRNACTDPMID:30047161
WSCD1Humanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of WSCD1 intronCTDPMID:30157460
WSCD1Humanamitrole increases expressionISORGD:13082126480464Amitrole results in increased expression of WSCD1 mRNACTDPMID:30047161
WSCD1Humanantirheumatic drug increases expressionEXP 6480464Antirheumatic Agents results in increased expression of WSCD1 mRNACTDPMID:24449571
WSCD1Humanaristolochic acid A increases expressionEXP 6480464aristolochic acid I results in increased expression of WSCD1 mRNACTDPMID:33212167
WSCD1Humanbenzo[a]pyrene increases expressionISORGD:13178596480464Benzo(a)pyrene results in increased expression of WSCD1 mRNACTDPMID:22228805
WSCD1Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of WSCD1 3' UTR; Benzo(a)pyrene affects the methylation of WSCD1 5' more ...CTDPMID:27901495|PMID:30157460
WSCD1Humanbis(2-ethylhexyl) phthalate decreases expressionEXP 6480464Diethylhexyl Phthalate results in decreased expression of WSCD1 mRNACTDPMID:31163220
WSCD1Humanbisphenol A decreases expressionISORGD:13082126480464bisphenol A results in decreased expression of WSCD1 mRNACTDPMID:25181051
WSCD1Humanbisphenol A increases expressionISORGD:13178596480464bisphenol A results in increased expression of WSCD1 mRNACTDPMID:32156529
WSCD1Humanbisphenol A increases methylationEXP 6480464bisphenol A results in increased methylation of WSCD1 geneCTDPMID:31601247
WSCD1Humanbisphenol A increases expressionISORGD:13082126480464bisphenol A results in increased expression of WSCD1 mRNACTDPMID:34947998
WSCD1Humanbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of WSCD1 mRNACTDPMID:31715268

1 to 20 of 75 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WSCD1HumanGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
WSCD1HumanGolgi membrane located_inISSUniProtKB:Q80XH4150520179 UniProtGO_REF:0000024
WSCD1HumanGolgi membrane located_inIEAUniProtKB-SubCell:SL-0134150520179 UniProtGO_REF:0000044
WSCD1HumanGolgi membrane located_inIEAUniProtKB:Q80XH4|ensembl:ENSMUSP00000104150150520179 EnsemblGO_REF:0000107
WSCD1Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WSCD1Humansulfotransferase activity enablesIEAInterPro:IPR000863150520179 InterProGO_REF:0000002
WSCD1Humansulfotransferase activity enablesIEAUniProtKB:Q80XH4|ensembl:ENSMUSP00000104150150520179 EnsemblGO_REF:0000107
WSCD1Humansulfotransferase activity enablesISSUniProtKB:Q80XH4150520179 UniProtGO_REF:0000024


#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:9628581   PMID:12477932   PMID:19460752   PMID:23740775   PMID:25231870  



WSCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,069,116 - 6,124,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,057,807 - 6,124,427 (+)EnsemblGRCh38hg38GRCh38
GRCh37175,972,436 - 6,027,747 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,914,658 - 5,968,471 (+)NCBINCBI36Build 36hg18NCBI36
Celera175,989,799 - 6,043,603 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef175,875,040 - 5,919,106 (+)NCBIHuRef
CHM1_1175,983,259 - 6,037,060 (+)NCBICHM1_1
T2T-CHM13v2.0175,963,314 - 6,018,611 (+)NCBIT2T-CHM13v2.0
Wscd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,640,719 - 71,680,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,640,746 - 71,680,473 (+)EnsemblGRCm39 Ensembl
GRCm381171,749,893 - 71,789,649 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,749,920 - 71,789,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv371171,564,205 - 71,603,149 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361171,566,898 - 71,605,842 (+)NCBIMGSCv36mm8
Celera1179,281,706 - 79,320,674 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.62NCBI
Wscd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81056,884,404 - 56,924,013 (+)NCBIGRCr8
mRatBN7.21056,385,858 - 56,426,442 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,395,874 - 56,424,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,060,037 - 61,088,751 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01060,548,533 - 60,577,247 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01056,047,592 - 56,076,306 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01058,330,711 - 58,372,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,332,588 - 58,371,196 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,084,069 - 58,112,875 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41058,616,509 - 58,645,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11058,630,131 - 58,658,949 (+)NCBI
Celera1055,530,183 - 55,558,989 (+)NCBICelera
Cytogenetic Map10q24NCBI
Wscd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546711,642,280 - 11,684,265 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546711,642,318 - 11,684,265 (+)NCBIChiLan1.0ChiLan1.0
WSCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21913,681,558 - 13,737,681 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11715,647,260 - 15,703,647 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0176,119,168 - 6,175,306 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,109,432 - 6,165,369 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,109,559 - 6,165,369 (+)Ensemblpanpan1.1panPan2
WSCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,992,773 - 31,023,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,995,909 - 31,023,536 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,124,007 - 31,154,807 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,094,030 - 31,124,869 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,094,030 - 31,124,880 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,059,098 - 31,089,543 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,017,809 - 31,048,589 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,191,293 - 31,222,141 (-)NCBIUU_Cfam_GSD_1.0
Wscd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,069,331 - 54,112,108 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,767,095 - 1,821,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,788,867 - 1,831,584 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WSCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,154,478 - 51,196,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,152,568 - 51,198,302 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,228,272 - 53,272,101 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WSCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,452,255 - 5,504,686 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl165,318,532 - 5,507,872 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605916,009,823 - 16,063,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wscd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247867,879,985 - 7,931,906 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247867,884,450 - 7,933,275 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in WSCD1
91 total Variants

1 to 10 of 122 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 17p13.2-13.1(chr17:5732977-8038822)x1 copy number loss See cases [RCV000051043] Chr17:5732977..8038822 [GRCh38]
Chr17:5636297..7942140 [GRCh37]
Chr17:5577021..7882865 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
GRCh38/hg38 17p13.2-13.1(chr17:3601515-7178024)x1 copy number loss See cases [RCV000053406] Chr17:3601515..7178024 [GRCh38]
Chr17:3504809..7081343 [GRCh37]
Chr17:3451558..7022067 [NCBI36]
Chr17:17p13.2-13.1
pathogenic
NM_015253.1(WSCD1):c.878G>A (p.Trp293Ter) single nucleotide variant Malignant melanoma [RCV000071609] Chr17:6109635 [GRCh38]
Chr17:6012955 [GRCh37]
Chr17:5953679 [NCBI36]
Chr17:17p13.2
not provided
NM_015253.1(WSCD1):c.1589G>A (p.Arg530Gln) single nucleotide variant Malignant melanoma [RCV000071610] Chr17:6120522 [GRCh38]
Chr17:6023842 [GRCh37]
Chr17:5964566 [NCBI36]
Chr17:17p13.2
not provided
NM_015253.1(WSCD1):c.1590G>A (p.Arg530=) single nucleotide variant Malignant melanoma [RCV000071611] Chr17:6120523 [GRCh38]
Chr17:6023843 [GRCh37]
Chr17:5964567 [NCBI36]
Chr17:17p13.2
not provided
GRCh38/hg38 17p13.3-13.1(chr17:162088-6959050)x1 copy number loss See cases [RCV000134135] Chr17:162088..6959050 [GRCh38]
Chr17:45835..6862369 [GRCh37]
Chr17:11879..6803093 [NCBI36]
Chr17:17p13.3-13.1
pathogenic
GRCh38/hg38 17p13.2-12(chr17:5732953-12095349)x3 copy number gain See cases [RCV000134851] Chr17:5732953..12095349 [GRCh38]
Chr17:5636273..11998666 [GRCh37]
Chr17:5576997..11939391 [NCBI36]
Chr17:17p13.2-12
pathogenic
GRCh38/hg38 17p13.3-13.1(chr17:162016-7697012)x1 copy number loss See cases [RCV000138214] Chr17:162016..7697012 [GRCh38]
Chr17:45835..7600330 [GRCh37]
Chr17:11807..7541055 [NCBI36]
Chr17:17p13.3-13.1
pathogenic
GRCh38/hg38 17p13.3-12(chr17:162016-12343901)x3 copy number gain See cases [RCV000138531] Chr17:162016..12343901 [GRCh38]
Chr17:45835..12247218 [GRCh37]
Chr17:11807..12187943 [NCBI36]
Chr17:17p13.3-12
pathogenic
GRCh38/hg38 17p13.2(chr17:5695008-6341442)x1 copy number loss See cases [RCV000139189] Chr17:5695008..6341442 [GRCh38]
Chr17:5598328..6244762 [GRCh37]
Chr17:5539052..6185486 [NCBI36]
Chr17:17p13.2
uncertain significance
1 to 10 of 122 rows

Predicted Target Of
Summary Value
Count of predictions:7566
Count of miRNA genes:1322
Interacting mature miRNAs:1740
Transcripts:ENST00000317744, ENST00000539421, ENST00000563763, ENST00000571494, ENST00000571973, ENST00000572764, ENST00000573619, ENST00000573634, ENST00000574232, ENST00000574946, ENST00000576083, ENST00000576233, ENST00000576947
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597434028GWAS1530102_Hprotein measurement QTL GWAS1530102 (human)1e-17protein measurement1760705426070543Human

D17S1832  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37175,972,677 - 5,972,867UniSTSGRCh37
Build 36175,913,401 - 5,913,591RGDNCBI36
Celera175,988,550 - 5,988,738RGD
Cytogenetic Map17p13.2UniSTS
HuRef175,863,800 - 5,863,988UniSTS
Marshfield Genetic Map1713.07UniSTS
Marshfield Genetic Map1713.07RGD
Genethon Genetic Map1713.0UniSTS
Whitehead-YAC Contig Map17 UniSTS
GeneMap99-G3 RH Map17349.0UniSTS
SHGC-150915  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37175,972,629 - 5,972,909UniSTSGRCh37
Build 36175,913,353 - 5,913,633RGDNCBI36
Celera175,988,502 - 5,988,780RGD
Cytogenetic Map17p13.2UniSTS
HuRef175,863,752 - 5,864,030UniSTS
TNG Radiation Hybrid Map173167.0UniSTS
TNG Radiation Hybrid Map1412682.0UniSTS
D17S1414E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37176,027,526 - 6,027,635UniSTSGRCh37
Build 36175,968,250 - 5,968,359RGDNCBI36
Celera176,043,382 - 6,043,491RGD
Cytogenetic Map17p13.2UniSTS
HuRef175,918,885 - 5,918,994UniSTS
GeneMap99-GB4 RH Map1746.33UniSTS
NCBI RH Map17102.8UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2403 2788 2234 4926 1719 2317 4 618 1503 459 2241 6825 6024 40 3709 843 1718 1587 172 1


1 to 25 of 25 rows
RefSeq Transcripts NM_001388405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001388406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001388407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001388408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001388409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001388410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001388411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005256572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047435702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054315620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054315621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054315622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB011095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC001231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC104770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK289603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK309645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE504506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 25 of 25 rows

Ensembl Acc Id: ENST00000317744   ⟹   ENSP00000323087
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,070,379 - 6,124,427 (+)Ensembl
Ensembl Acc Id: ENST00000539421   ⟹   ENSP00000446032
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,071,108 - 6,121,300 (+)Ensembl
Ensembl Acc Id: ENST00000571494   ⟹   ENSP00000458339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,080,659 - 6,121,301 (+)Ensembl
Ensembl Acc Id: ENST00000571973   ⟹   ENSP00000458527
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,077,950 - 6,124,427 (+)Ensembl
Ensembl Acc Id: ENST00000572764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,057,807 - 6,080,649 (+)Ensembl
Ensembl Acc Id: ENST00000573634   ⟹   ENSP00000460396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,069,117 - 6,120,738 (+)Ensembl
Ensembl Acc Id: ENST00000574232   ⟹   ENSP00000458374
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,071,108 - 6,120,710 (+)Ensembl
Ensembl Acc Id: ENST00000574946   ⟹   ENSP00000460825
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,069,106 - 6,124,427 (+)Ensembl
Ensembl Acc Id: ENST00000576083   ⟹   ENSP00000460041
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,070,424 - 6,088,104 (+)Ensembl
Ensembl Acc Id: ENST00000576233   ⟹   ENSP00000461642
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,080,147 - 6,124,427 (+)Ensembl
Ensembl Acc Id: ENST00000576947   ⟹   ENSP00000460428
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,081,882 - 6,090,361 (+)Ensembl
Ensembl Acc Id: ENST00000714059   ⟹   ENSP00000519349
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,069,115 - 6,123,265 (+)Ensembl
Ensembl Acc Id: ENST00000714060   ⟹   ENSP00000519350
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl176,070,912 - 6,124,426 (+)Ensembl
RefSeq Acc Id: NM_001388405   ⟹   NP_001375334
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,069,116 - 6,124,427 (+)NCBI
T2T-CHM13v2.0175,963,314 - 6,018,611 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001388406   ⟹   NP_001375335
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,071,095 - 6,124,427 (+)NCBI
T2T-CHM13v2.0175,965,296 - 6,018,611 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001388407   ⟹   NP_001375336
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,070,379 - 6,124,427 (+)NCBI
T2T-CHM13v2.0175,964,580 - 6,018,611 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001388408   ⟹   NP_001375337
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,069,116 - 6,124,427 (+)NCBI
T2T-CHM13v2.0175,963,314 - 6,018,611 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001388409   ⟹   NP_001375338
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,070,379 - 6,124,427 (+)NCBI
T2T-CHM13v2.0175,964,580 - 6,018,611 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001388410   ⟹   NP_001375339
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,077,959 - 6,102,623 (+)NCBI
T2T-CHM13v2.0175,972,160 - 5,996,818 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001388411   ⟹   NP_001375340
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,070,379 - 6,102,623 (+)NCBI
T2T-CHM13v2.0175,964,580 - 5,996,818 (+)NCBI
Sequence:
RefSeq Acc Id: NM_015253   ⟹   NP_056068
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,070,379 - 6,124,427 (+)NCBI
GRCh37175,972,426 - 6,027,747 (+)NCBI
Build 36175,914,658 - 5,968,471 (+)NCBI Archive
Celera175,989,799 - 6,043,603 (+)RGD
HuRef175,875,040 - 5,919,106 (+)RGD
CHM1_1175,983,259 - 6,037,060 (+)NCBI
T2T-CHM13v2.0175,964,580 - 6,018,611 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005256572   ⟹   XP_005256629
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,077,959 - 6,124,427 (+)NCBI
GRCh37175,972,426 - 6,027,747 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047435701   ⟹   XP_047291657
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,070,379 - 6,124,427 (+)NCBI
RefSeq Acc Id: XM_047435702   ⟹   XP_047291658
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,071,095 - 6,124,427 (+)NCBI
RefSeq Acc Id: XM_054315620   ⟹   XP_054171595
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0175,972,160 - 6,018,611 (+)NCBI
RefSeq Acc Id: XM_054315621   ⟹   XP_054171596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0175,964,580 - 6,018,611 (+)NCBI
RefSeq Acc Id: XM_054315622   ⟹   XP_054171597
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0175,965,296 - 6,018,611 (+)NCBI
1 to 30 of 35 rows
Protein RefSeqs NP_001375334 (Get FASTA)   NCBI Sequence Viewer  
  NP_001375335 (Get FASTA)   NCBI Sequence Viewer  
  NP_001375336 (Get FASTA)   NCBI Sequence Viewer  
  NP_001375337 (Get FASTA)   NCBI Sequence Viewer  
  NP_001375338 (Get FASTA)   NCBI Sequence Viewer  
  NP_001375339 (Get FASTA)   NCBI Sequence Viewer  
  NP_001375340 (Get FASTA)   NCBI Sequence Viewer  
  NP_056068 (Get FASTA)   NCBI Sequence Viewer  
  XP_005256629 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291657 (Get FASTA)   NCBI Sequence Viewer  
  XP_047291658 (Get FASTA)   NCBI Sequence Viewer  
  XP_054171595 (Get FASTA)   NCBI Sequence Viewer  
  XP_054171596 (Get FASTA)   NCBI Sequence Viewer  
  XP_054171597 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH09975 (Get FASTA)   NCBI Sequence Viewer  
  BAA25449 (Get FASTA)   NCBI Sequence Viewer  
  BAF82292 (Get FASTA)   NCBI Sequence Viewer  
  CAH56249 (Get FASTA)   NCBI Sequence Viewer  
  EAW90316 (Get FASTA)   NCBI Sequence Viewer  
  EAW90317 (Get FASTA)   NCBI Sequence Viewer  
  EAW90318 (Get FASTA)   NCBI Sequence Viewer  
  EAW90319 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000323087
  ENSP00000323087.5
  ENSP00000458374
  ENSP00000458374.1
  ENSP00000458527
  ENSP00000458527.2
  ENSP00000460396
  ENSP00000460825
1 to 30 of 35 rows
1 to 5 of 26 rows
1 to 5 of 26 rows
RefSeq Acc Id: NP_056068   ⟸   NM_015253
- Peptide Label: isoform 1
- UniProtKB: O60276 (UniProtKB/Swiss-Prot),   D3DTM3 (UniProtKB/Swiss-Prot),   A8K0N8 (UniProtKB/Swiss-Prot),   Q96G45 (UniProtKB/Swiss-Prot),   Q658N2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005256629   ⟸   XM_005256572
- Peptide Label: isoform X1
- UniProtKB: O60276 (UniProtKB/Swiss-Prot),   D3DTM3 (UniProtKB/Swiss-Prot),   A8K0N8 (UniProtKB/Swiss-Prot),   Q96G45 (UniProtKB/Swiss-Prot),   Q658N2 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000458339   ⟸   ENST00000571494
Ensembl Acc Id: ENSP00000458527   ⟸   ENST00000571973
Ensembl Acc Id: ENSP00000460396   ⟸   ENST00000573634
WSC

Name Modeler Protein Id AA Range Protein Structure
AF-Q658N2-F1-model_v2 AlphaFold Q658N2 1-575 view protein structure

RGD ID:7233567
Promoter ID:EPDNEW_H22529
Type:initiation region
Name:WSCD1_2
Description:WSC domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22530  EPDNEW_H22531  EPDNEW_H22532  EPDNEW_H22533  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,069,116 - 6,069,176EPDNEW
RGD ID:7233569
Promoter ID:EPDNEW_H22530
Type:initiation region
Name:WSCD1_4
Description:WSC domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22529  EPDNEW_H22531  EPDNEW_H22532  EPDNEW_H22533  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,070,552 - 6,070,612EPDNEW
RGD ID:7233571
Promoter ID:EPDNEW_H22531
Type:initiation region
Name:WSCD1_1
Description:WSC domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22529  EPDNEW_H22530  EPDNEW_H22532  EPDNEW_H22533  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,071,095 - 6,071,155EPDNEW
RGD ID:7233573
Promoter ID:EPDNEW_H22532
Type:initiation region
Name:WSCD1_3
Description:WSC domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22529  EPDNEW_H22530  EPDNEW_H22531  EPDNEW_H22533  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,077,959 - 6,078,019EPDNEW
RGD ID:7233575
Promoter ID:EPDNEW_H22533
Type:initiation region
Name:WSCD1_5
Description:WSC domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22529  EPDNEW_H22530  EPDNEW_H22531  EPDNEW_H22532  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38176,080,748 - 6,080,808EPDNEW


1 to 40 of 48 rows
Database
Acc Id
Source(s)
COSMIC WSCD1 COSMIC
Ensembl Genes ENSG00000179314 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000317744 ENTREZGENE
  ENST00000317744.10 UniProtKB/Swiss-Prot
  ENST00000571973 ENTREZGENE
  ENST00000571973.2 UniProtKB/Swiss-Prot
  ENST00000573634 ENTREZGENE
  ENST00000574232 ENTREZGENE
  ENST00000574232.5 UniProtKB/Swiss-Prot
  ENST00000574946 ENTREZGENE
  ENST00000574946.5 UniProtKB/Swiss-Prot
  ENST00000576233.2 UniProtKB/Swiss-Prot
  ENST00000714060 ENTREZGENE
  ENST00000714060.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
GTEx ENSG00000179314 GTEx
HGNC ID HGNC:29060 ENTREZGENE
Human Proteome Map WSCD1 Human Proteome Map
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Sialate-O-sulfotransferase UniProtKB/Swiss-Prot
  Sulfotransferase_dom UniProtKB/Swiss-Prot
  WSC_carb-bd UniProtKB/Swiss-Prot
KEGG Report hsa:23302 UniProtKB/Swiss-Prot
NCBI Gene 23302 ENTREZGENE
OMIM 619584 OMIM
PANTHER SIALATE:O-SULFOTRANSFERASE 1 UniProtKB/Swiss-Prot
  WSCD FAMILY MEMBER CG9164 UniProtKB/Swiss-Prot
Pfam Sulfotransfer_1 UniProtKB/Swiss-Prot
  WSC UniProtKB/Swiss-Prot
PharmGKB PA162409253 PharmGKB
PROSITE WSC UniProtKB/Swiss-Prot
SMART WSC UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A1B0GXC0_HUMAN UniProtKB/TrEMBL
  A0AAQ5BHC8_HUMAN UniProtKB/TrEMBL
  A8K0N8 ENTREZGENE
  D3DTM3 ENTREZGENE
  I3L0U0_HUMAN UniProtKB/TrEMBL
  I3L127_HUMAN UniProtKB/TrEMBL
  I3L3E6 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 48 rows