Wscd1 (WSC domain containing 1) - Rat Genome Database

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Gene: Wscd1 (WSC domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Wscd1
Name: WSC domain containing 1
RGD ID: 12453493
Description: ENCODES a protein that exhibits sulfotransferase activity (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 25 (ortholog); genetic disease (ortholog); Liver Neoplasms (ortholog); FOUND IN Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WSC domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,069,331 - 54,112,108 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,767,095 - 1,821,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,788,867 - 1,831,584 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Wscd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,069,331 - 54,112,108 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366771,767,095 - 1,821,175 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366771,788,867 - 1,831,584 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WSCD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,069,116 - 6,124,427 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,057,807 - 6,124,427 (+)EnsemblGRCh38hg38GRCh38
GRCh37175,972,436 - 6,027,747 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,914,658 - 5,968,471 (+)NCBINCBI36Build 36hg18NCBI36
Celera175,989,799 - 6,043,603 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef175,875,040 - 5,919,106 (+)NCBIHuRef
CHM1_1175,983,259 - 6,037,060 (+)NCBICHM1_1
T2T-CHM13v2.0175,963,314 - 6,018,611 (+)NCBIT2T-CHM13v2.0
Wscd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,640,719 - 71,680,475 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,640,746 - 71,680,473 (+)EnsemblGRCm39 Ensembl
GRCm381171,749,893 - 71,789,649 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,749,920 - 71,789,647 (+)EnsemblGRCm38mm10GRCm38
MGSCv371171,564,205 - 71,603,149 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361171,566,898 - 71,605,842 (+)NCBIMGSCv36mm8
Celera1179,281,706 - 79,320,674 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.62NCBI
Wscd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81056,884,404 - 56,924,013 (+)NCBIGRCr8
mRatBN7.21056,385,858 - 56,426,442 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,395,874 - 56,424,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,060,037 - 61,088,751 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01060,548,533 - 60,577,247 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01056,047,592 - 56,076,306 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01058,330,711 - 58,372,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,332,588 - 58,371,196 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,084,069 - 58,112,875 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41058,616,509 - 58,645,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11058,630,131 - 58,658,949 (+)NCBI
Celera1055,530,183 - 55,558,989 (+)NCBICelera
Cytogenetic Map10q24NCBI
Wscd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546711,642,280 - 11,684,265 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546711,642,318 - 11,684,265 (+)NCBIChiLan1.0ChiLan1.0
WSCD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21913,681,558 - 13,737,681 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11715,647,260 - 15,703,647 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0176,119,168 - 6,175,306 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,109,432 - 6,165,369 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,109,559 - 6,165,369 (+)Ensemblpanpan1.1panPan2
WSCD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,992,773 - 31,023,526 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,995,909 - 31,023,536 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,124,007 - 31,154,807 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,094,030 - 31,124,869 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl531,094,030 - 31,124,880 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1531,059,098 - 31,089,543 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,017,809 - 31,048,589 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,191,293 - 31,222,141 (-)NCBIUU_Cfam_GSD_1.0
WSCD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,154,478 - 51,196,933 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,152,568 - 51,198,302 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21253,228,272 - 53,272,101 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WSCD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,452,255 - 5,504,686 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl165,318,532 - 5,507,872 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605916,009,823 - 16,063,791 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wscd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247867,879,985 - 7,931,906 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247867,884,450 - 7,933,275 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000024252   ⟹   ENSSTOP00000016869
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366771,767,095 - 1,821,175 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000024675   ⟹   ENSSTOP00000023687
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366771,789,526 - 1,820,891 (-)Ensembl
RefSeq Acc Id: XM_040269509   ⟹   XP_040125443
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560254,069,331 - 54,112,108 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040125443 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016869.2
  ENSSTOP00000023687.2
GenBank Protein KAG3270112 (Get FASTA)   NCBI Sequence Viewer  
  KAG3270113 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040125443   ⟸   XM_040269509
- UniProtKB: I3NH40 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000023687   ⟸   ENSSTOT00000024675
RefSeq Acc Id: ENSSTOP00000016869   ⟸   ENSSTOT00000024252
Protein Domains
WSC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024674 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024252.2 UniProtKB/TrEMBL
  ENSSTOT00000024675.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
  WSC_carb-bd UniProtKB/TrEMBL
NCBI Gene Wscd1 ENTREZGENE
PANTHER WSC DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  WSCD FAMILY MEMBER CG9164 UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
  WSC UniProtKB/TrEMBL
PROSITE WSC UniProtKB/TrEMBL
SMART WSC UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3MXM4_ICTTR UniProtKB/TrEMBL
  I3NH40 ENTREZGENE, UniProtKB/TrEMBL