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Gene: Tent5b-ps1 (terminal nucleotidyltransferase 5B, pseudogene 1) Rattus norvegicus

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Symbol:

Tent5b-ps1

Name:

terminal nucleotidyltransferase 5B, pseudogene 1

RGD ID:

1589452

Description:

Type:

pseudo

RefSeq Status:

MODEL

Previously known as:

LOC680624; similar to CG30497-PA; similar to CG30497-PA, isoform A

Related Functional Gene:

Tent5b

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	27,212,320 - 27,214,297 (+)	NCBI		GRCr8
mRatBN7.2	11	13,725,106 - 13,728,086 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	11	12,275,103 - 12,277,820 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	11	15,937,367 - 15,940,204 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	13,864,648 - 13,866,416 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	11	13,743,803 - 13,746,520 (+)	NCBI		Celera
Cytogenetic Map	11	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

Variants in Tent5b-ps1
23 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	1	69446234	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	12831046	25121472	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	1	35331169	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	1041931	66113562	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	1	21836709	Rat
1641927	Alcrsp10	Alcohol response QTL 10			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	11	8436674	53436674	Rat

Markers in Region

RH142757

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	13,727,189 - 13,727,311 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	145,702,353 - 145,702,475 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	12,277,694 - 12,277,815	NCBI	Rnor6.0
Rnor_6.0	5	151,699,067 - 151,699,188	NCBI	Rnor6.0
Rnor_5.0	11	15,939,402 - 15,939,523	UniSTS	Rnor5.0
Rnor_5.0	5	155,361,218 - 155,361,339	UniSTS	Rnor5.0
RGSC_v3.4	5	151,605,482 - 151,605,603	UniSTS	RGSC3.4
RGSC_v3.4	11	13,866,378 - 13,866,499	UniSTS	RGSC3.4
Celera	11	13,746,394 - 13,746,515	UniSTS
Celera	5	144,123,103 - 144,123,224	UniSTS
RH 3.4 Map	5	988.7	UniSTS
Cytogenetic Map	5	q36	UniSTS
Cytogenetic Map	11	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008768543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008768543 ⟹ XP_008766765

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	12,275,103 - 12,277,820 (+)	NCBI

Sequence:

show sequence

TATATTTGTGTGTCTGTGTGTATATAAAGGGAGTAAGGAAAGTAAGCAATACATTTAAAAACTT
TCTTTTATATCTTTTTTGTTTTGTGTGCTGTAATGCTATATGTATTTGAACATGTGTGCTACAA
CACACATGTGTAACTCAGAGAATAATATCTAGGTGTTAATTTTCTCCCTTCAATGTGAGCCCAG
GAGAGCAAAATTAGGTTGGCAGGCCCAGTGGCAAGCACCTTTTCCGGCTGGGCCATCTCCCACC
CCTAGCAATGCATTGTTCAAAGGCCTTCATAGTCCATTACAAGTTCTCTGTTTCTATCTTTGAT
CTTTTTTGAAAATCATTAAATTTAACTACTGGAGAGATTCTGTTGTTACATAATATCAACCCGA
TATGTTTCCTTTCCTAGTAAGTAAAAATGGTTATTGCCTCAAAGATACATTAGCAATAAAGGCC
ATGATGTAAGATAGGGAATCAGAGTCCAGATAGAGTCTATCAGCTGCAATGTCCCTTTTTATTC
CCTAAAATTGTTTTAAAAAATTTACCTCAAGAGACCTGAGGTTCTAGGGAGTGCAGAGGTTGGG
TTGGGTGTGGGTGTGAGTATGAGGACATCCTCTGAAGATAGTAGAGGAAGAATGGGATGAGGAA
TGGTCCAAGGTCAGACTGGGAGGTGAATAGTGACTGGACTGTAAAAAAGATTAAGGCTCTAAGA
TCTGTTAGTCCTCCCTGCTGTCGGAGTTGTTCCCTGGGTTTGCCTCGCCGCCGCCGGGTCCCTG
CACCCCGCCTTGGCCCGTGCACAGCCACTCTCCCTGCCCTCCTCGCCTTCACCATTCCCGGGTC
TCTGCCGTCGAGGCACGGGGGCCGGGTGAATGATGCCGTCGGAGAGTGGAGCTGAGAGCCTGGA
GCAGCCAGCTGTGCAGGTGGGGACCGGTGCAGCCTCGGCAGTGGCCACGGCTGGGGCGGCCAGC
GGCGGCCCGGACCTGGAGGCCTCCTCGGCCTCTCTGGGACGGCACCAGAGCCGACTGAGCTGGC
CACAGGTGAAGCGGCTGGACACGCTGCTCAAAGAGCCCATCCCCATTCACGGGCGAGGCAACTT
CCCCACGCTGAGCGTGCAACCCCAGCAGATTGTACAGGTAGTTCGCAGTAGCTTGGAAGAACAG
GGACTGCATGTCCATAGCGTGCGCTTGCATGGCTCAGCTGCGAGCCACGTGCTGCACCCGGAGA
GTGGCCTAGGCTACAAGGACCTGGACCTGGTGTTCCCAATGGACCTGCAGACTGAGGCATCCTT
CCAGCTGACCAAGGCAGTGGTCCTGGCTTGCCTGCTGGACTTCCTGCTTGCGGGAGTGAGCCGG
GCCAAGATAACGCTGCTGACACTCAAGGAGGCCTATGTGCAGAAACTGGTGAAAGTGTGCACAG
ACCTGGACCGCTGGAGCCTCATCTCACTGTCCAACAAGAGCGGCAAGAATGTGGAACTCAAGTT
CGTGGACTCCGTGAGGCGCCAGTTCGAATTCAGCATCGACTCCTTTCAGATCATCCTGGACTCG
CTGCTCCTCTTTGGCCAGTGCTCATCCACACCAATGTCGGAGGCCTTCCACCCTACGGTGACTG
GTGAGAGCCTGTATGGGGACTTCGCGGAGGCCTTGGAGCACCTGCAGCACCGCGTCATTGCCAC
ACGCAGCCCCGAGGAGATCCGAGATGGCGGCCTCCTCAAATACTGCCACCTCCTGGTACGGGGT
TTCCGGCCAAGGCCCAGCACTGATGTTCGCGCCCTACAGAGATATATGTGTTCCGGTTTCTTCA
TCGACTTTCCGGACCCGGTGGAACAGAGGCGCATTCTGGAGCGCTACCTGGAGGCCCACTTCGG
CGGAGCAGAAGCAGCCCGTCGGTATGCTTGCCTTGTGACACTGCACCGGGTGGTCAAGGAGAGC
ACAGTGTGCCTCATGAGCCACGAGCGCCGCCAGACCCTGGACCTTATTACCATGCTAGCCCTCC
AGGCACTAGCGGAGCAGGGCCCTGCTGCCATGGCTGCCTTGGCCTGGCGACGTCCTGGCTCAGA
TGGGGTTGTACCGGCCACCGTTAATTACTATGTGACCCCCATGCAGCCTCTGCTGCCCCGCGCT
CATTCCTATCCTACCTGGCTGCCTTGCAACTGACTCTGATCCTGGCCAGAAGGGAACGAGCTTC
CTGGGTGGGGTGGGGTCATCAGGTATGTGTTGAGGATGGAACCAGACACAGGCCACC

hide sequence

RefSeq Acc Id:

XM_008776085 ⟹ XP_008774307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	11	13,743,803 - 13,746,520 (+)	NCBI

Sequence:

show sequence

TATATTTGTGTGTCTGTGTGTATATAAAGGGAGTAAGGAAAGTAAGCAATACATTTAAAAACTT
TCTTTTATATCTTTTTTGTTTTGTGTGCTGTAATGCTATATGTATTTGAACATGTGTGCTACAA
CACACATGTGTAACTCAGAGAATAATATCTAGGTGTTAATTTTCTCCCTTCAATGTGAGCCCAG
GAGAGCAAAATTAGGTTGGCAGGCCCAGTGGCAAGCACCTTTTCCGGCTGGGCCATCTCCCACC
CCTAGCAATGCATTGTTCAAAGGCCTTCATAGTCCATTACAAGTTCTCTGTTTCTATCTTTGAT
CTTTTTTGAAAATCATTAAATTTAACTACTGGAGAGATTCTGTTGTTACATAATATCAACCCGA
TATGTTTCCTTTCCTAGTAAGTAAAAATGGTTATTGCCTCAAAGATACATTAGCAATAAAGGCC
ATGATGTAAGATAGGGAATCAGAGTCCAGATAGAGTCTATCAGCTGCAATGTCCCTTTTTATTC
CCTAAAATTGTTTTAAAAAATTTACCTCAAGAGACCTGAGGTTCTAGGGAGTGCAGAGGTTGGG
TTGGGTGTGGGTGTGAGTATGAGGACATCCTCTGAAGATAGTAGAGGAAGAATGGGATGAGGAA
TGGTCCAAGGTCAGACTGGGAGGTGAATAGTGACTGGACTGTAAAAAAGATTAAGGCTCTAAGA
TCTGTTAGTCCTCCCTGCTGTCGGAGTTGTTCCCTGGGTTTGCCTCGCCGCCGCCGGGTCCCTG
CACCCCGCCTTGGCCCGTGCACAGCCACTCTCCCTGCCCTCCTCGCCTTCACCATTCCCGGGTC
TCTGCCGTCGAGGCACGGGGGCCGGGTGAATGATGCCGTCGGAGAGTGGAGCTGAGAGCCTGGA
GCAGCCAGCTGTGCAGGTGGGGACCGGTGCAGCCTCGGCAGTGGCCACGGCTGGGGCGGCCAGC
GGCGGCCCGGACCTGGAGGCCTCCTCGGCCTCTCTGGGACGGCACCAGAGCCGACTGAGCTGGC
CACAGGTGAAGCGGCTGGACACGCTGCTCAAAGAGCCCATCCCCATTCACGGGCGAGGCAACTT
CCCCACGCTGAGCGTGCAACCCCAGCAGATTGTACAGGTAGTTCGCAGTAGCTTGGAAGAACAG
GGACTGCATGTCCATAGCGTGCGCTTGCATGGCTCAGCTGCGAGCCACGTGCTGCACCCGGAGA
GTGGCCTAGGCTACAAGGACCTGGACCTGGTGTTCCCAATGGACCTGCAGACTGAGGCATCCTT
CCAGCTGACCAAGGCAGTGGTCCTGGCTTGCCTGCTGGACTTCCTGCTTGCGGGAGTGAGCCGG
GCCAAGATAACGCTGCTGACACTCAAGGAGGCCTATGTGCAGAAACTGGTGAAAGTGTGCACAG
ACCTGGACCGCTGGAGCCTCATCTCACTGTCCAACAAGAGCGGCAAGAATGTGGAACTCAAGTT
CGTGGACTCCGTGAGGCGCCAGTTCGAATTCAGCATCGACTCCTTTCAGATCATCCTGGACTCG
CTGCTCCTCTTTGGCCAGTGCTCATCCACACCAATGTCGGAGGCCTTCCACCCTACGGTGACTG
GTGAGAGCCTGTATGGGGACTTCGCGGAGGCCTTGGAGCACCTGCAGCACCGCGTCATTGCCAC
ACGCAGCCCCGAGGAGATCCGAGATGGCGGCCTCCTCAAATACTGCCACCTCCTGGTACGGGGT
TTCCGGCCAAGGCCCAGCACTGATGTTCGCGCCCTACAGAGATATATGTGTTCCGGTTTCTTCA
TCGACTTTCCGGACCCGGTGGAACAGAGGCGCATTCTGGAGCGCTACCTGGAGGCCCACTTCGG
CGGAGCAGAAGCAGCCCGTCGGTATGCTTGCCTTGTGACACTGCACCGGGTGGTCAAGGAGAGC
ACAGTGTGCCTCATGAGCCACGAGCGCCGCCAGACCCTGGACCTTATTACCATGCTAGCCCTCC
AGGCACTAGCGGAGCAGGGCCCTGCTGCCATGGCTGCCTTGGCCTGGCGACGTCCTGGCTCAGA
TGGGGTTGTACCGGCCACCGTTAATTACTATGTGACCCCCATGCAGCCTCTGCTGCCCCGCGCT
CATTCCTATCCTACCTGGCTGCCTTGCAACTGACTCTGATCCTGGCCAGAAGGGAACGAGCTTC
CTGGGTGGGGTGGGGTCATCAGGTATGTGTTGAGGATGGAACCAGACACAGGCCACC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-22238	BioCyc
NCBI Gene	680624	ENTREZGENE
PhenoGen	Tent5b-ps1	PhenoGen

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-10	Tent5b-ps1	terminal nucleotidyltransferase 5B, pseudogene 1	LOC680624	similar to CG30497-PA, isoform A	Symbol and Name Changed	1299863	APPROVED
2006-11-19	LOC680624	similar to CG30497-PA, isoform A			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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