Ralbp1-ps1 (ralA binding protein 1, pseudogene 1) - Rat Genome Database

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Gene: Ralbp1-ps1 (ralA binding protein 1, pseudogene 1) Rattus norvegicus
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Symbol: Ralbp1-ps1
Name: ralA binding protein 1, pseudogene 1
RGD ID: 1587228
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC498132; LOC501456; similar to GTPase activating protein testicular GAP1; similar to RalA binding protein 1
Related Functional Gene: Ralbp1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89456,215 - 459,515 (-)NCBIGRCr8
mRatBN7.29369,017 - 372,317 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHRSP_BbbUtx_1.096,163,320 - 6,166,620 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
Rnor_6.016514,156 - 517,455 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.016514,361 - 524,181 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4124,717,669 - 4,720,937 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Ralbp1-ps1
55 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_008771014   ⟹   XP_008769236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.016514,156 - 518,420 (-)NCBI
RefSeq Acc Id: XR_146327
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.016514,361 - 524,181 (-)NCBI
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJZ4-F1-model_v2 AlphaFold A0A096MJZ4 1-672 view protein structure


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28585 BioCyc
NCBI Gene 501456 ENTREZGENE
PhenoGen Ralbp1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ralbp1-ps1  ralA binding protein 1, pseudogene 1  LOC501456  similar to GTPase activating protein testicular GAP1  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC501456  similar to GTPase activating protein testicular GAP1  LOC498132  similar to RalA binding protein 1  Data merged from RGD:1595712 737654 PROVISIONAL
2006-11-20 LOC498132  similar to RalA binding protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC501456  similar to GTPase activating protein testicular GAP1      Symbol and Name status set to provisional 70820 PROVISIONAL