LOC686042 (hypothetical protein LOC686042) - Rat Genome Database

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Gene: LOC686042 (hypothetical protein LOC686042) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC686042
Name: hypothetical protein LOC686042
RGD ID: 1586654
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FANCD2 opposite strand protein-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X30,528,100 - 30,529,367 (+)NCBIGRCr8
mRatBN7.2X26,911,173 - 26,912,427 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX26,911,209 - 26,911,751 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.013100,188,555 - 100,189,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.4X47,209,015 - 47,209,557 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX27,324,210 - 27,324,752 (+)NCBICelera
Cytogenetic MapXq13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2447036044931007Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X400149344939387Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2447036045082063Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X197044046970440Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X811148653111486Rat


Expression

RNA-SEQ Expression

endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
reproductive system
1 1 1 1 1 12

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006250422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000071062   ⟹   ENSRNOP00000064991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX26,911,209 - 26,911,751 (+)Ensembl
Rnor_6.0 Ensembl13100,189,236 - 100,189,778 (-)Ensembl
RefSeq Acc Id: XM_006250422   ⟹   XP_006250484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X30,528,100 - 30,529,367 (+)NCBI
mRatBN7.2X26,911,173 - 26,912,427 (+)NCBI
Rnor_6.013100,188,555 - 100,189,813 (-)NCBI
Rnor_5.013105,170,393 - 105,171,655 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006250484 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064991.1
RefSeq Acc Id: XP_006250484   ⟸   XM_006250422
- UniProtKB: M0R6E3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064991   ⟸   ENSRNOT00000071062

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R6E3-F1-model_v2 AlphaFold M0R6E3 1-180 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699082
Promoter ID:EPDNEW_R9596
Type:single initiation site
Name:LOC100912759_1
Description:uncharacterized LOC100912759
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013100,189,787 - 100,189,847EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1586654 AgrOrtholog
BioCyc Gene G2FUF-2666 BioCyc
Ensembl Genes ENSRNOG00000049264 Ensembl
  ENSRNOG00000063299 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071062.2 UniProtKB/TrEMBL
InterPro FANCD2OS UniProtKB/TrEMBL
KEGG Report rno:686042 UniProtKB/TrEMBL
NCBI Gene 686042 ENTREZGENE
PANTHER FANCD2 OPPOSITE STRAND PROTEIN UniProtKB/TrEMBL
  PTHR31036 UniProtKB/TrEMBL
Pfam DUF4563 UniProtKB/TrEMBL
PhenoGen LOC686042 PhenoGen
RatGTEx ENSRNOG00000049264 RatGTEx
  ENSRNOG00000063299 RatGTEx
UniProt M0R6E3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-11-19 LOC686042  hypothetical protein LOC686042      Symbol and Name status set to provisional 70820 PROVISIONAL