Aagab-ps2 (alpha- and gamma-adaptin binding protein, pseudogene 2) - Rat Genome Database

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Gene: Aagab-ps2 (alpha- and gamma-adaptin binding protein, pseudogene 2) Rattus norvegicus
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Symbol: Aagab-ps2
Name: alpha- and gamma-adaptin binding protein, pseudogene 2
RGD ID: 1586039
Description:
Type: pseudo (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: LOC498912; similar to Alpha- and gamma-adaptin-binding protein p34
Related Functional Gene: Aagab  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81912,082,424 - 12,084,160 (-)NCBIGRCr8
mRatBN7.21912,076,842 - 12,078,376 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1912,077,434 - 12,078,376 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01912,970,864 - 12,972,386 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1912,971,447 - 12,972,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01924,082,688 - 24,084,208 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41912,526,991 - 12,527,933 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1911,951,623 - 11,953,145 (-)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Aagab-ps2
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:28
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000018484
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 2 8 26 28 24 9 10 9 6 51 33 13 2 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000018484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1912,077,434 - 12,078,376 (-)Ensembl
Rnor_6.0 Ensembl1912,971,447 - 12,972,386 (-)Ensembl
RefSeq Acc Id: XR_597132
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01912,971,241 - 12,972,386 (-)NCBI
RefSeq Acc Id: XR_598425
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1911,952,000 - 11,953,145 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6452 BioCyc
Ensembl Genes ENSRNOG00000013826 Ensembl
NCBI Gene 498912 ENTREZGENE
PhenoGen Aagab-ps2 PhenoGen
RatGTEx ENSRNOG00000013826 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Aagab-ps2  alpha- and gamma-adaptin binding protein, pseudogene 2  LOC498912  similar to Alpha- and gamma-adaptin-binding protein p34  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC498912  similar to Alpha- and gamma-adaptin-binding protein p34      Symbol and Name status set to provisional 70820 PROVISIONAL