Trappc2ll1 (trafficking protein particle complex subunit 2L like 1) - Rat Genome Database

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Gene: Trappc2ll1 (trafficking protein particle complex subunit 2L like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Trappc2ll1 (Ensembl: LOC100909916)
Name: trafficking protein particle complex subunit 2L like 1 (Ensembl:trafficking protein particle complex subunit 2-like protein-like)
RGD ID: 1564492
Description: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Predicted to be part of TRAPP complex; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; gentamycin.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC498914; RGD1564492; similar to hypothetical protein, 2-6
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81913,689,662 - 13,690,217 (-)NCBIGRCr8
mRatBN7.21913,683,939 - 13,684,509 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1913,684,080 - 13,684,409 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.036,979,525 - 6,980,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0312,330,631 - 12,339,905 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41914,186,679 - 14,187,109 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat

Markers in Region
RH141164  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0312,330,692 - 12,330,900NCBIRnor5.0
Rnor_5.01966,134,478 - 66,135,490NCBIRnor5.0
Rnor_5.01925,865,579 - 25,865,787NCBIRnor5.0
Rnor_5.05102,728,621 - 102,728,829NCBIRnor5.0
RGSC_v3.41914,186,597 - 14,186,804UniSTSRGSC3.4
RGSC_v3.41952,893,334 - 52,894,345UniSTSRGSC3.4
Celera1949,904,517 - 49,905,528UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map19p11UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017592362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000048772   ⟹   ENSRNOP00000081186
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1913,684,080 - 13,684,409 (-)Ensembl
RefSeq Acc Id: XM_017592362   ⟹   XP_017447851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81913,689,662 - 13,690,217 (-)NCBI
mRatBN7.21913,683,939 - 13,684,509 (-)NCBI
Rnor_6.036,979,525 - 6,980,080 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017447851 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081186.1
RefSeq Acc Id: XP_017447851   ⟸   XM_017592362
- UniProtKB: A0A8I5ZRE4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000081186   ⟸   ENSRNOT00000048772

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6414 BioCyc
Ensembl Genes ENSRNOG00000032666 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048772.4 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.70 UniProtKB/TrEMBL
InterPro Longin-like_dom_sf UniProtKB/TrEMBL
  Sedlin UniProtKB/TrEMBL
  TRAPPC UniProtKB/TrEMBL
  TRAPPC2L UniProtKB/TrEMBL
KEGG Report rno:100909916 UniProtKB/TrEMBL
  rno:498914 UniProtKB/TrEMBL
NCBI Gene 498914 ENTREZGENE
PANTHER PTHR12403 UniProtKB/TrEMBL
  TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Sedlin_N UniProtKB/TrEMBL
PhenoGen Trappc2ll1 PhenoGen
RatGTEx ENSRNOG00000032666 RatGTEx
SMART Sybindin UniProtKB/TrEMBL
Superfamily-SCOP SSF64356 UniProtKB/TrEMBL
UniProt A0A8I5ZRE4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Trappc2ll1  trafficking protein particle complex subunit 2L like 1  RGD1564492  similar to hypothetical protein, 2-6  Symbol and Name Changed 1299863 APPROVED
2013-05-24 RGD1564492  similar to hypothetical protein, 2-6  LOC690701  similar to hematopoietic stem/progenitor cells 176  Data merged from RGD:1592261 1643240 APPROVED
2008-04-30 RGD1564492  similar to hypothetical protein, 2-6   RGD1564492_predicted  similar to hypothetical protein, 2-6 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC690701  similar to hematopoietic stem/progenitor cells 176      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1564492_predicted  similar to hypothetical protein, 2-6 (predicted)  LOC498914  similar to hypothetical protein, 2-6  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498914  similar to hypothetical protein, 2-6      Symbol and Name status set to provisional 70820 PROVISIONAL