C19h1orf131 (similar to human chromosome 1 open reading frame 131) - Rat Genome Database

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Gene: C19h1orf131 (similar to human chromosome 1 open reading frame 131) Rattus norvegicus
Analyze
Symbol: C19h1orf131
Name: similar to human chromosome 1 open reading frame 131
RGD ID: 1562218
Description: Predicted to be located in chromosome. Orthologous to human C1orf131 (chromosome 1 open reading frame 131); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC292100; MGC124748; RGD1562218; similar to RIKEN cDNA 0610039J04; uncharacterized protein C1orf131 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21952,807,932 - 52,822,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,807,934 - 52,822,267 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1959,592,652 - 59,606,984 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01960,443,704 - 60,458,036 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01962,519,112 - 62,533,444 (-)NCBIRnor_WKY
Rnor_6.01957,600,231 - 57,614,558 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,600,239 - 57,614,558 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01968,313,471 - 68,327,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,019,196 - 55,033,524 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1952,175,064 - 52,189,398 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:20813266   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
C19h1orf131
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21952,807,932 - 52,822,259 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1952,807,934 - 52,822,267 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1959,592,652 - 59,606,984 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01960,443,704 - 60,458,036 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01962,519,112 - 62,533,444 (-)NCBIRnor_WKY
Rnor_6.01957,600,231 - 57,614,558 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1957,600,239 - 57,614,558 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01968,313,471 - 68,327,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,019,196 - 55,033,524 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1952,175,064 - 52,189,398 (-)NCBICelera
Cytogenetic Map19q12NCBI
C1orf131
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381231,223,765 - 231,241,175 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1231,223,763 - 231,241,187 (-)EnsemblGRCh38hg38GRCh38
GRCh371231,359,511 - 231,376,921 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361229,426,132 - 229,443,547 (-)NCBINCBI36Build 36hg18NCBI36
Celera1204,624,375 - 204,641,792 (-)NCBICelera
Cytogenetic Map1q42.2NCBI
HuRef1201,842,894 - 201,860,311 (-)NCBIHuRef
CHM1_11232,633,160 - 232,650,575 (-)NCBICHM1_1
T2T-CHM13v2.01230,607,028 - 230,624,438 (-)NCBIT2T-CHM13v2.0
2810004N23Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398125,566,094 - 125,589,768 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8125,563,684 - 125,589,859 (-)EnsemblGRCm39 Ensembl
GRCm388124,839,355 - 124,863,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8124,836,945 - 124,863,120 (-)EnsemblGRCm38mm10GRCm38
MGSCv378127,363,255 - 127,386,929 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368127,725,447 - 127,749,081 (-)NCBIMGSCv36mm8
Celera8129,152,198 - 129,171,504 (-)NCBICelera
Cytogenetic Map8E2NCBI
LOC102008952
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554927,521,604 - 7,536,744 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554927,519,800 - 7,535,234 (+)NCBIChiLan1.0ChiLan1.0
C1H1orf131
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11211,801,832 - 211,819,280 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1211,801,832 - 211,819,280 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01206,776,710 - 206,794,199 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
C4H1orf131
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.148,189,749 - 8,204,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl48,189,741 - 8,204,433 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha48,182,082 - 8,196,769 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.048,215,213 - 8,229,900 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl48,215,214 - 8,229,905 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.148,218,727 - 8,233,385 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.048,340,710 - 8,355,393 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.048,569,302 - 8,583,999 (+)NCBIUU_Cfam_GSD_1.0
CUNH1orf131
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934443,275,697 - 43,286,696 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648419,440,923 - 19,451,922 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C14H1orf131
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1459,240,514 - 59,258,838 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11459,240,343 - 59,257,168 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21463,904,312 - 63,919,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf131
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12568,500,539 - 68,518,646 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2568,500,233 - 68,519,096 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605570,407,896 - 70,426,046 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf131
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477518,443,321 - 18,456,961 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477518,443,247 - 18,457,201 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH131133  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,810,794 - 52,811,005 (+)MAPPERmRatBN7.2
Rnor_6.01957,603,094 - 57,603,304NCBIRnor6.0
Rnor_5.01968,316,334 - 68,316,544UniSTSRnor5.0
RGSC_v3.41955,022,059 - 55,022,269UniSTSRGSC3.4
Celera1952,177,927 - 52,178,137UniSTS
Cytogenetic Map19q12UniSTS
RH141356  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21952,808,074 - 52,808,279 (+)MAPPERmRatBN7.2
Rnor_6.01957,600,374 - 57,600,578NCBIRnor6.0
Rnor_5.01968,313,614 - 68,313,818UniSTSRnor5.0
RGSC_v3.41955,019,339 - 55,019,543UniSTSRGSC3.4
Celera1952,175,207 - 52,175,411UniSTS
RH 3.4 Map19719.0UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:901
Count of miRNA genes:324
Interacting mature miRNAs:431
Transcripts:ENSRNOT00000025948
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 45 29 19 29 2 5 71 35 34 11 2
Low 8 12 12 12 6 6 3 7 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000025948   ⟹   ENSRNOP00000025948
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,807,934 - 52,822,267 (-)Ensembl
Rnor_6.0 Ensembl1957,600,239 - 57,614,558 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106115   ⟹   ENSRNOP00000094915
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,807,934 - 52,822,266 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115093   ⟹   ENSRNOP00000089311
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1952,810,402 - 52,822,252 (-)Ensembl
RefSeq Acc Id: NM_001034919   ⟹   NP_001030091
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21952,807,932 - 52,822,259 (-)NCBI
Rnor_6.01957,600,231 - 57,614,558 (-)NCBI
Rnor_5.01968,313,471 - 68,327,797 (-)NCBI
RGSC_v3.41955,019,196 - 55,033,524 (-)RGD
Celera1952,175,064 - 52,189,398 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001030091 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05748 (Get FASTA)   NCBI Sequence Viewer  
  EDL96742 (Get FASTA)   NCBI Sequence Viewer  
  Q3KRF3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001030091   ⟸   NM_001034919
- UniProtKB: Q3KRF3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000025948   ⟸   ENSRNOT00000025948
RefSeq Acc Id: ENSRNOP00000089311   ⟸   ENSRNOT00000115093
RefSeq Acc Id: ENSRNOP00000094915   ⟸   ENSRNOT00000106115

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KRF3-F1-model_v2 AlphaFold Q3KRF3 1-282 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701241
Promoter ID:EPDNEW_R11764
Type:multiple initiation site
Name:RGD1562218_1
Description:similar to RIKEN cDNA 0610039J04
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01957,614,558 - 57,614,618EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562218 AgrOrtholog
BioCyc Gene G2FUF-5229 BioCyc
Ensembl Genes ENSRNOG00000019169 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000025948 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000089311.1 UniProtKB/TrEMBL
  ENSRNOP00000094915.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025948 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000106115.1 UniProtKB/TrEMBL
  ENSRNOT00000115093.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5597965 IMAGE-MGC_LOAD
InterPro DUF4602 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:292100 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124748 IMAGE-MGC_LOAD
NCBI Gene 292100 ENTREZGENE
Pfam DUF4602 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen C19h1orf131 PhenoGen
UniProt A0A8I6AIN5_RAT UniProtKB/TrEMBL
  A0A8I6AKP9_RAT UniProtKB/TrEMBL
  CA131_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-23 C19h1orf131  similar to human chromosome 1 open reading frame 131  RGD1562218  similar to RIKEN cDNA 0610039J04  Name and Symbol changed 629549 APPROVED
2006-03-30 RGD1562218  similar to RIKEN cDNA 0610039J04  MGC124748    Symbol updated 1299863 APPROVED
2006-02-09 MGC124748  similar to RIKEN cDNA 0610039J04      Symbol and Name status set to provisional 70820 PROVISIONAL