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Gene: Fsaf1 (40S small subunit processome assembly factor 1) Rattus norvegicus

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Symbol:

Fsaf1 (Ensembl: C19h1orf131)

Name:

40S small subunit processome assembly factor 1 (Ensembl:similar to human chromosome 1 open reading frame 131)

RGD ID:

1562218

Description:

Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in chromosome. Predicted to be part of small-subunit processome. Orthologous to human FSAF1 (40S small subunit processome assembly factor 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

C19h1orf131; hypothetical protein LOC292100; MGC124748; RGD1562218; similar to human chromosome 1 open reading frame 131; similar to RIKEN cDNA 0610039J04; uncharacterized protein C1orf131 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,705,313 - 69,719,894 (-)	NCBI		GRCr8
mRatBN7.2	19	52,807,932 - 52,822,259 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,807,934 - 52,822,267 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	59,592,652 - 59,606,984 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	60,443,704 - 60,458,036 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,519,112 - 62,533,444 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,600,231 - 57,614,558 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,600,239 - 57,614,558 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	68,313,471 - 68,327,797 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	55,019,196 - 55,033,524 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	52,175,064 - 52,189,398 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fsaf1	Rat	Actin-Accumulation Myopathy		ISO	FSAF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Actin accumulation myopathy	ClinVar	PMID:28492532
Fsaf1	Rat	congenital disorder of glycosylation type IIq		ISO	FSAF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital disorder of glycosylation and type IIq	ClinVar	PMID:24784932 more ...
Fsaf1	Rat	gastrointestinal stromal tumor		ISO	FSAF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Fsaf1	Rat	parathyroid carcinoma		ISO	FSAF1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fsaf1	Rat	17beta-estradiol	increases expression	ISO	Fsaf1 (Mus musculus)	6480464	Estradiol results in increased expression of FSAF1 mRNA	CTD	PMID:39298647
Fsaf1	Rat	2,2',4,4'-Tetrabromodiphenyl ether	increases expression	EXP		6480464	2 more ...	CTD	PMID:27291303
Fsaf1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of FSAF1 mRNA	CTD	PMID:33387578
Fsaf1	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Fsaf1 (Mus musculus)	6480464	bisphenol S results in increased expression of FSAF1 mRNA	CTD	PMID:39298647
Fsaf1	Rat	aflatoxin B1	increases methylation	ISO	FSAF1 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of FSAF1 gene	CTD	PMID:27153756
Fsaf1	Rat	arsane	multiple interactions	ISO	FSAF1 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of FSAF1 mRNA	CTD	PMID:39836092
Fsaf1	Rat	arsenic atom	multiple interactions	ISO	FSAF1 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of FSAF1 mRNA	CTD	PMID:39836092
Fsaf1	Rat	azathioprine	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Azathioprine results in decreased expression of FSAF1 mRNA	CTD	PMID:22623647
Fsaf1	Rat	beta-lapachone	increases expression	ISO	FSAF1 (Homo sapiens)	6480464	beta-lapachone results in increased expression of FSAF1 mRNA	CTD	PMID:38218311
Fsaf1	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of FSAF1 mRNA	CTD	PMID:25181051
Fsaf1	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of FSAF1 gene	CTD	PMID:28505145
Fsaf1	Rat	cadmium dichloride	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of FSAF1 mRNA	CTD	PMID:38568856
Fsaf1	Rat	copper(II) sulfate	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of FSAF1 mRNA	CTD	PMID:19549813
Fsaf1	Rat	cyclosporin A	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of FSAF1 mRNA	CTD	PMID:20106945 and PMID:25562108
Fsaf1	Rat	Dibutyl phosphate	affects expression	ISO	FSAF1 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of FSAF1 mRNA	CTD	PMID:37042841
Fsaf1	Rat	dicrotophos	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	dicrotophos results in decreased expression of FSAF1 mRNA	CTD	PMID:28302478
Fsaf1	Rat	disodium selenite	increases expression	ISO	FSAF1 (Homo sapiens)	6480464	Sodium Selenite results in increased expression of FSAF1 mRNA	CTD	PMID:18175754
Fsaf1	Rat	fenvalerate	increases expression	EXP		6480464	fenvalerate results in increased expression of FSAF1 mRNA	CTD	PMID:30307764
Fsaf1	Rat	finasteride	increases expression	EXP		6480464	Finasteride results in increased expression of FSAF1 mRNA	CTD	PMID:24136188
Fsaf1	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of FSAF1 mRNA	CTD	PMID:24136188
Fsaf1	Rat	formaldehyde	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Formaldehyde results in decreased expression of FSAF1 mRNA	CTD	PMID:20655997
Fsaf1	Rat	FR900359	decreases phosphorylation	ISO	FSAF1 (Homo sapiens)	6480464	FR900359 results in decreased phosphorylation of FSAF1 protein	CTD	PMID:37730182
Fsaf1	Rat	hydrogen peroxide	affects expression	ISO	FSAF1 (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of FSAF1 mRNA	CTD	PMID:20044591
Fsaf1	Rat	iron dichloride	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	ferrous chloride results in decreased expression of FSAF1 mRNA	CTD	PMID:35984750
Fsaf1	Rat	kojic acid	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	kojic acid results in decreased expression of FSAF1 mRNA	CTD	PMID:16595896
Fsaf1	Rat	manganese atom	multiple interactions	ISO	FSAF1 (Homo sapiens)	6480464	[manganese chloride results in increased abundance of Manganese] which results in increased expression of FSAF1 mRNA	CTD	PMID:39836092
Fsaf1	Rat	manganese(0)	multiple interactions	ISO	FSAF1 (Homo sapiens)	6480464	[manganese chloride results in increased abundance of Manganese] which results in increased expression of FSAF1 mRNA	CTD	PMID:39836092
Fsaf1	Rat	manganese(II) chloride	multiple interactions	ISO	FSAF1 (Homo sapiens)	6480464	[manganese chloride results in increased abundance of Manganese] which results in increased expression of FSAF1 mRNA	CTD	PMID:39836092
Fsaf1	Rat	nitrates	multiple interactions	ISO	Fsaf1 (Mus musculus)	6480464	[Particulate Matter results in increased abundance of Nitrates] which results in increased expression of FSAF1 mRNA	CTD	PMID:35964746
Fsaf1	Rat	paracetamol	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of FSAF1 mRNA	CTD	PMID:21420995 and PMID:29067470
Fsaf1	Rat	rotenone	decreases expression	EXP		6480464	Rotenone results in decreased expression of FSAF1 mRNA	CTD	PMID:19013527
Fsaf1	Rat	sodium arsenite	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of FSAF1 mRNA	CTD	PMID:38568856
Fsaf1	Rat	sodium arsenite	multiple interactions	ISO	FSAF1 (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of FSAF1 mRNA	CTD	PMID:39836092
Fsaf1	Rat	temozolomide	increases expression	ISO	FSAF1 (Homo sapiens)	6480464	Temozolomide results in increased expression of FSAF1 mRNA	CTD	PMID:31758290
Fsaf1	Rat	thiram	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Thiram results in decreased expression of FSAF1 mRNA	CTD	PMID:38568856
Fsaf1	Rat	trichostatin A	affects expression	ISO	FSAF1 (Homo sapiens)	6480464	trichostatin A affects the expression of FSAF1 mRNA	CTD	PMID:28542535
Fsaf1	Rat	urethane	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Urethane results in decreased expression of FSAF1 mRNA	CTD	PMID:28818685
Fsaf1	Rat	valproic acid	affects expression	ISO	FSAF1 (Homo sapiens)	6480464	Valproic Acid affects the expression of FSAF1 mRNA	CTD	PMID:25979313
Fsaf1	Rat	zinc atom	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Zinc deficiency results in decreased expression of FSAF1 mRNA	CTD	PMID:22171008
Fsaf1	Rat	zinc(0)	decreases expression	ISO	FSAF1 (Homo sapiens)	6480464	Zinc deficiency results in decreased expression of FSAF1 mRNA	CTD	PMID:22171008

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fsaf1	Rat	ribosomal small subunit biogenesis	involved_in	IEA	UniProtKB:Q8NDD1 and ensembl:ENSP00000355609	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fsaf1	Rat	ribosomal small subunit biogenesis	involved_in	ISO	FSAF1 (Homo sapiens)	1624291	PMID:34516797	RGD	PMID:34516797
Fsaf1	Rat	ribosomal small subunit biogenesis	involved_in	ISS	UniProtKB:Q8NDD1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fsaf1	Rat	chromosome	located_in	ISS	UniProtKB:Q8NDD1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Fsaf1	Rat	chromosome	located_in	IEA	UniProtKB-SubCell:SL-0468	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Fsaf1	Rat	chromosome	located_in	IEA	UniProtKB-KW:KW-0158	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Fsaf1	Rat	chromosome	located_in	ISO	FSAF1 (Homo sapiens)	1624291	PMID:20813266	RGD	PMID:20813266
Fsaf1	Rat	chromosome	located_in	IEA	UniProtKB:Q8NDD1 and ensembl:ENSP00000355609	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fsaf1	Rat	nucleolus	located_in	IEA	UniProtKB-SubCell:SL-0188	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Fsaf1	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Fsaf1	Rat	small-subunit processome	part_of	IEA	UniProtKB:Q8NDD1 and ensembl:ENSP00000355609	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fsaf1	Rat	small-subunit processome	part_of	ISO	FSAF1 (Homo sapiens)	1624291	PMID:34516797	RGD	PMID:34516797
Fsaf1	Rat	small-subunit processome	part_of	ISS	UniProtKB:Q8NDD1	1600115	GO_REF:0000024	UniProt	GO_REF:0000024

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fsaf1	Rat	protein binding	enables	ISO	FSAF1 (Homo sapiens) and UniProtKB:Q8NDD1-6	1624291	UniProtKB:P55040 more ...	RGD	PMID:32296183

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:20813266	PMID:22658674	PMID:22681889

Fsaf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,705,313 - 69,719,894 (-)	NCBI		GRCr8
mRatBN7.2	19	52,807,932 - 52,822,259 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,807,934 - 52,822,267 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	59,592,652 - 59,606,984 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	60,443,704 - 60,458,036 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,519,112 - 62,533,444 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,600,231 - 57,614,558 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,600,239 - 57,614,558 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	68,313,471 - 68,327,797 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	55,019,196 - 55,033,524 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	52,175,064 - 52,189,398 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

FSAF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	231,223,765 - 231,241,175 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	231,223,763 - 231,241,187 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	231,359,511 - 231,376,921 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	229,426,132 - 229,443,547 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	204,624,375 - 204,641,792 (-)	NCBI		Celera
Cytogenetic Map	1	q42.2	NCBI
HuRef	1	201,842,894 - 201,860,311 (-)	NCBI		HuRef
CHM1_1	1	232,633,160 - 232,650,575 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	230,607,028 - 230,624,438 (-)	NCBI		T2T-CHM13v2.0

Fsaf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	125,566,094 - 125,589,768 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	125,563,684 - 125,589,859 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	124,839,355 - 124,863,029 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	124,836,945 - 124,863,120 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	127,363,255 - 127,386,929 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	127,725,447 - 127,749,081 (-)	NCBI		MGSCv36	mm8
Celera	8	129,152,198 - 129,171,504 (-)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI
cM Map	8	72.81	NCBI

Fsaf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	7,521,604 - 7,536,744 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955492	7,519,800 - 7,535,234 (+)	NCBI	ChiLan1.0	ChiLan1.0

FSAF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	17,961,789 - 17,979,221 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	18,157,437 - 18,174,869 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	206,776,710 - 206,794,199 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	211,801,832 - 211,819,280 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	211,801,832 - 211,819,280 (-)	Ensembl	panpan1.1		panPan2

C4H1orf131
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	8,189,749 - 8,204,428 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	8,189,741 - 8,204,433 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	8,182,082 - 8,196,769 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	8,215,213 - 8,229,900 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	8,215,214 - 8,229,905 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	8,218,727 - 8,233,385 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	8,340,710 - 8,355,393 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	8,569,302 - 8,583,999 (+)	NCBI		UU_Cfam_GSD_1.0

Fsaf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	43,275,697 - 43,286,696 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	19,445,013 - 19,451,464 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	19,440,923 - 19,451,922 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C14H1orf131
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	59,240,514 - 59,258,838 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	59,240,343 - 59,257,168 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	63,904,312 - 63,919,185 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FSAF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	68,500,539 - 68,518,646 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	68,500,233 - 68,519,096 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	70,407,896 - 70,426,046 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fsaf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	18,443,321 - 18,456,961 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	18,443,247 - 18,457,201 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Fsaf1
41 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	901
Count of miRNA genes:	324
Interacting mature miRNAs:	431
Transcripts:	ENSRNOT00000025948
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	49976481	53225766	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	44340214	55283277	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat

RH131133

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	52,810,794 - 52,811,005 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	57,603,094 - 57,603,304	NCBI	Rnor6.0
Rnor_5.0	19	68,316,334 - 68,316,544	UniSTS	Rnor5.0
RGSC_v3.4	19	55,022,059 - 55,022,269	UniSTS	RGSC3.4
Celera	19	52,177,927 - 52,178,137	UniSTS
Cytogenetic Map	19	q12	UniSTS

RH141356

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	52,808,074 - 52,808,279 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	57,600,374 - 57,600,578	NCBI	Rnor6.0
Rnor_5.0	19	68,313,614 - 68,313,818	UniSTS	Rnor5.0
RGSC_v3.4	19	55,019,339 - 55,019,543	UniSTS	RGSC3.4
Celera	19	52,175,207 - 52,175,411	UniSTS
RH 3.4 Map	19	719.0	UniSTS
Cytogenetic Map	19	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001034919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025948 ⟹ ENSRNOP00000025948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	52,807,934 - 52,822,267 (-)	Ensembl
Rnor_6.0 Ensembl	19	57,600,239 - 57,614,558 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106115 ⟹ ENSRNOP00000094915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	52,807,934 - 52,822,266 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115093 ⟹ ENSRNOP00000089311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	52,810,402 - 52,822,252 (-)	Ensembl

RefSeq Acc Id:

NM_001034919 ⟹ NP_001030091

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,705,313 - 69,719,640 (-)	NCBI
mRatBN7.2	19	52,807,932 - 52,822,259 (-)	NCBI
Rnor_6.0	19	57,600,231 - 57,614,558 (-)	NCBI
Rnor_5.0	19	68,313,471 - 68,327,797 (-)	NCBI
RGSC_v3.4	19	55,019,196 - 55,033,524 (-)	RGD
Celera	19	52,175,064 - 52,189,398 (-)	RGD

Sequence:

show sequence

GCTGATTCCAATGGCGGCAGAGCGAGAGTTGGATTCCTCTGAGCTTCCTGGTTCGGAGGCGCTCCTGGACGCCGTGCTGCGGACCCTCTACGACCTGGGAGAGACAGAAGGTGAAACAGAGCAGAAAA
GGACCAGAAAGAAGAAGGAAAAGAAGAGAGACTCGGAGACGGTGGCAGACAGGGCAGCAGAACCGCTTCCCCTGCCTGCGTCTCCTGGGCGAGACCAGAGGAAGAGCGCTTCCAGCTTTTTCAAGAAG
CTCAGGGAAGAACTGCAGTCTGCTCCCGCTGCCCCTTCAGAAGTCCCCGCTGCTACGACTGCAGTCTCCCTCTTTCCCCTAGAGAACGACAGCAAGCTAGTGGAAGTGGTAGAGTTCCACAGCAGAAG
TGAAAAAAGAAAACCAAAGTCAGAGGAAGATAAACCGGCAAAGAATAAAACAAAGGTCCTTGAAAAAGATGTGGTTATTCAGGAATTTAACCTAGAAAAGGCTCGTCTGGAAGTACACCGCTTTGGGA
TCACAGGCTATGGCAAAGGAAAAGAAAGAGTCCTGGAGCGGGAGCGGGCCATCATGCTGGGGGCTAAGCCTCCCAAAAACACTTACGTGAATTACAAGGTTTTGCAGGAGCAAATCAAAGAAAAGAGG
ACCTCAATGGAAGAAGAAAAGAGAGCGGCCCAGGAGACAGACATTTTCAAGAGAAAGAAGAGGAAAGGGAGAAGTCAGGAGGACAGGAGATCCAAGAAGTTGGCTCCCAGCATTTTGTCAAGTGGACG
GGCTGCACAAGTTGGAAAATTTAGAAATGGGACATTGATTCTAAGCCCCGCCGATATCAAGAAAATCAATTCTTCCAGGGTATCCAAATGAAGTCCCTGTCAGCTCCAGAGAGGAGCAGGAACAGTGG
CAGTGCGAAGGCACAGGACCTGCTGACCCTGTGGCTGCTCACTCTTGTTCCACAGGGTCTTTCTCGTTTGAGCAGTGAGTCTGTGGGCAGGCAGCGACCCTGCGGAGTGCGGGGCTGTGCCCGGGCTC
CCCTCCTGTTGCAGGTTGCTGCTGTTGGCACACTGGTCACTCTCCACTTTTAATTTCACTGTCTCTGTGAATGGGGTTGAAGTGCCTTTTGGACTCATGAAGACACTGACTGCACTTGTTATCCATTG
GCTCTGTGGGAGTCAGCCTGACACGCGTGTGAGTCCACATTGTAAGAATTTCCAAAACTACACCTCTGTAATAGGAGTAACTGGCTGTTAGGTAACACACAGGTGATTCTGACAGGGTCCCCAAACCT
ACTTGTAGCTGTAATCTCCCTCACAAGGCCATTTTACAGTGATGTCACCCCTGCCTGGATGTCAGCATCTCCTCAGAGACTGAGATTCATTAAAGGGAACTCTCTGGTGACAGGAACAATTTTGATAT
TTCCCATCCGAGGAGTGTCTTGTCCAGCAAGCTGTGCACACAGGTTTAAAAACCTGCAGGTTGTGGCCGGCCATAGGACGTTGTCATAATGCGCTGAGAGCATTGCCAAAACAACCCACAAGATGAAA
TCTAATTTGTTGGATAATTTAAATGATGTTTTTAAGCTTATTTATTTGTAAGCAAGGGCATATTGCCACAGTGCTTGTGTGGAAGTCACGGGGTCTGGTTCTCCCAGCATGCGGGTCCCAGGAATCAA
ATTTGGGTGTCAGGCTTGGCAGCAAACACCTTCACCTGCTCACCCCATCAGCAGCCCCATTTAGAAGATCGTAACAGGACAGCACTAGGGAGAGACCTCAGAGCATGGAGGAGCTATGGAAGGTCACT
GCATCAGCTGACACCATCTTCTCAAGGAGAGCCTGGGGGCTGCGGAGTACCACCGCCATGAGCCAGCAGGGCTTAGACAGCTGAGGACTGCCAGCTTGGACCAGAGGCCCAGAATAAGTAACTAGCTT
TGGTTTCTGCTTTGTAATGTATTGTGTAAATATTTATGCTCAAACCTTAAGGAAGGCAGAGAAGTCTACTGACCACCAAGTATTGTAGAAACACCTCAGAGGACAAAATGATCCACAAACAGCTCTGT
TCTGAGTGCAGAGGACCAAGCCTAAGTCCGTGCTCTGGATGAAGGTTTCCTCCAGCAAAATTAACTACAGCAGTGCTTCTCAGATATTTACAGTTTTCAGCTTATTACAATGGAAAACTTACAGTGAT
GAAACAGTTTTGTGGTTGTGGGGACGCGTCATCACAACACGAGGAACTGAGTTAAAGGGTCGCAGCATTAGGAAGGGCGAGAACGGCCTGCTCTATGGAAAGCCATCCTAAGGGAAACAGCCATGCCT
GAGTTCTTGCTCTGGCCACAGCACAGGACCTGGCTTCAGTCACCTCAGGGTTTGGCCCACACAGCTGTGCAGGACACATGAATAGGCAGGGCTTGCTGAGATGGAAGTGGCCTACACAGGAAAGGACC
ACACTGTGAATCCTGACTGGCCAGATGCTCTCTTAGCCAATACTGACTTGGATCTCGGTGGCAAAGGAGCACTGTCCTGATCCCAAATCAGATTGACAGGAAGCTGACATTGCCCTAACTGCACCCAT
CACACTCCCAGGGCCAGAGGCAGCACCTGCCCCAGTGCTTGGTGGTAGTCATGTGTCTGCCTCCTTAACTGCTGTGACTTCTCCCTCCCCCTGCATAGTCCACCTACCTCCTCCACTCAGGCCTTACT
GGAATCCACACCACTCTTGTACCCACCTTACTACCCCATCATCCACAGCAAGCTTCTGTGCCCACCACGGCCTTGACTGTATCTTCCGCCATACCGACTCAGGGCCACCTGCACATGTTCATGTATGT
GCACGTGCATACATGTGTTCAGGTTCACATGCACGTGTGTGGAGGAGACTAGAGGGTAGCCTCAGCTGCCGTCTCTTAGGTACTGTCTGCCTGGCTGTTTGGTTTTAGGTTTGTGTAGGTGTCTCTAC
CTGCCATGTATGTCTGTGTATCACTTGCATGCTTGGTGTTCAGGGAGGCCGGAGGAGGTGACGGACCCCATGGAACTGGAACCACAGATGGTTGTAAGCCGCCGTGTGGTGCTGGGAATGGAACTCGG
AACTCGGAGCCACTACTGCTCTTTGCTGCGCTTTCTCTCCAGTTCCCTACCTTGCATTTCAAGACTGTCTCTCAGTCACCTGGAGCTAAGGAAGTAGGACAGGCTGGCAAGCCAGTGAGCTCCTGGGA
CCTGCCTGTCTCCAGCACGGGAACTCGAGCTCTGGCCGTTGCTTAGATCACTGTATTAAGATGCCCTTCAGAGGGTGAGAAAGCCCAGAGCATTTTACATGCTTAGGATTTTGACTGTTACCATGCTT
GAGTTAGAACTCAGAAAAGCAGGCAGGCTAAACTGAAGATCTCCAAGCAGTTTGCCCGTCACATTTTTAAATGTGAGTTTTAAGGACTAGAACTGTTGATTTTTATGCTCACACAGCATGCACATTGA
CTGAGCTATTACCCCAGCCCTCCCTAGTCACCTCTTACTAGTCAGAAAGTGGATATATATAAGAAAGACACAGGCAGTCCTGAAAGACACTGAATTTGTTAGGGGATCCTCAGCTTTCCTCCACGAGA
AGTTCTCAGCCCTTAGAGCTAATCTTCAATTAGCATGCAGCAGTAGCCTGTAGCTATTGCTTAACTAGGCCCAGCTTCAATCAGAAATATTCAAGGTTTGTGTATGGTAGGGCGTTGTGATTGTCTTA
GGGTGGTCTTTTGATCCCCGCCCCAAAGAGATTCTCCCGGCCCTAAACAAGTTTTTACAGAATCTAAAGTTCACAAGTTTCTAGTTAAGACAGTTTGGCGTTTAGCAAACAGAACCTGCTATCTACAT
GGGCGTCAGTGGTGGCCAGTTCTCAAGGGAGGAGAGGATCTGTGACCCTTTCCAGAAAGGAGGAGGGGCAAGCAGGTTCAGAGCAGAAGCCAGTGGTTCCAGCCTGCTGCGCTGTCTCAGCTCAGTTT
GCCATTCTGGTTTTTTTAATCTGTTTATTTCATAATAAATCATTTCATTAAAAAACAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063277958 ⟹ XP_063134028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,709,070 - 69,719,894 (-)	NCBI


Protein RefSeqs	NP_001030091	(Get FASTA)	NCBI Sequence Viewer
	XP_063134028	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05748	(Get FASTA)	NCBI Sequence Viewer
	EDL96742	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025948.5
GenBank Protein	Q3KRF3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001030091 ⟸ NM_001034919

- UniProtKB:

Q3KRF3 (UniProtKB/Swiss-Prot), A6KJ20 (UniProtKB/TrEMBL), A0A8I6AKP9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAERELDSSELPGSEALLDAVLRTLYDLGETEGETEQKRTRKKKEKKRDSETVADRAAEPLPLPASPGRDQRKSASSFFKKLREELQSAPAAPSEVPAATTAVSLFPLENDSKLVEVVEFHSRSEKR
KPKSEEDKPAKNKTKVLEKDVVIQEFNLEKARLEVHRFGITGYGKGKERVLERERAIMLGAKPPKNTYVNYKVLQEQIKEKRTSMEEEKRAAQETDIFKRKKRKGRSQEDRRSKKLAPSILSSGRAAQ
VGKFRNGTLILSPADIKKINSSRVSK

hide sequence

Ensembl Acc Id:

ENSRNOP00000025948 ⟸ ENSRNOT00000025948

Ensembl Acc Id:

ENSRNOP00000089311 ⟸ ENSRNOT00000115093

Ensembl Acc Id:

ENSRNOP00000094915 ⟸ ENSRNOT00000106115

RefSeq Acc Id:	XP_063134028 ⟸ XM_063277958
- Peptide Label:	isoform X1

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3KRF3-F1-model_v2	AlphaFold	Q3KRF3	1-282	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13701241

Promoter ID:

EPDNEW_R11764

Type:

multiple initiation site

Name:

RGD1562218_1

Description:

similar to RIKEN cDNA 0610039J04

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	57,614,558 - 57,614,618	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-5229	BioCyc
Ensembl Genes	ENSRNOG00000019169	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000025948.6	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5597965	IMAGE-MGC_LOAD
InterPro	DUF4602	UniProtKB/Swiss-Prot
	SSU_Processome_Comp	UniProtKB/Swiss-Prot
KEGG Report	rno:292100	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124748	IMAGE-MGC_LOAD
NCBI Gene	292100	ENTREZGENE
PANTHER	UNCHARACTERIZED	UniProtKB/Swiss-Prot
	ZGC:194224	UniProtKB/Swiss-Prot
Pfam	DUF4602	UniProtKB/Swiss-Prot
PhenoGen	Fsaf1	PhenoGen
RatGTEx	ENSRNOG00000019169	RatGTEx
UniProt	A0A8I6AIN5_RAT	UniProtKB/TrEMBL
	A0A8I6AKP9	ENTREZGENE, UniProtKB/TrEMBL
	A6KJ20	ENTREZGENE, UniProtKB/TrEMBL
	CA131_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-11-01	Fsaf1	40S small subunit processome assembly factor 1	C19h1orf131	similar to human chromosome 1 open reading frame 131	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2022-06-23	C19h1orf131	similar to human chromosome 1 open reading frame 131	RGD1562218	similar to RIKEN cDNA 0610039J04	Name and Symbol changed	629549	APPROVED
2006-03-30	RGD1562218	similar to RIKEN cDNA 0610039J04	MGC124748		Symbol updated	1299863	APPROVED
2006-02-09	MGC124748	similar to RIKEN cDNA 0610039J04			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar