Ddx60 (DEXD/H-box helicase 60) - Rat Genome Database

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Gene: Ddx60 (DEXD/H-box helicase 60) Rattus norvegicus
Analyze
Symbol: Ddx60
Name: DEXD/H-box helicase 60
RGD ID: 1560014
Description: Predicted to enable double-stranded DNA binding activity; double-stranded RNA binding activity; and single-stranded RNA binding activity. Predicted to be involved in defense response to virus; positive regulation of MDA-5 signaling pathway; and positive regulation of RIG-I signaling pathway. Predicted to be located in cytosol and intermediate filament cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human DDX60 (DExD/H-box helicase 60); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07025140.1; DEAD (Asp-Glu-Ala-Asp) box polypeptide 60; hypothetical LOC306407; LOC100911190; LOC306407; LOC306409; mCG11385-like; probable ATP-dependent RNA helicase DDX60; probable ATP-dependent RNA helicase DDX60-like; RGD1560014; similar to hypothetical protein FLJ20035
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81633,087,940 - 33,208,843 (-)NCBIGRCr8
mRatBN7.21628,077,000 - 28,197,903 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01629,816,144 - 29,936,220 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1629,834,086 - 29,936,307 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01629,666,917 - 29,799,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41630,934,840 - 31,080,644 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1628,069,864 - 28,080,236 (-)NCBICelera
Cytogenetic Map16p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx60Ratprostate cancer  ISODDX60 (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx60RatHuman Influenza  ISODDX60 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23326326

1 to 20 of 111 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx60Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of DDX60 mRNA]CTDPMID:31150632
Ddx60Rat(-)-alpha-phellandrene increases expressionISODDX60 (Homo sapiens)6480464alpha phellandrene results in increased expression of DDX60 mRNACTDPMID:25075043
Ddx60Rat(-)-demecolcine increases expressionISODDX60 (Homo sapiens)6480464Demecolcine results in increased expression of DDX60 mRNACTDPMID:23649840
Ddx60Rat(-)-epigallocatechin 3-gallate multiple interactionsISODDX60 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of DDX60 mRNACTDPMID:22079256
Ddx60Rat(-)-epigallocatechin 3-gallate decreases expressionISODDX60 (Homo sapiens)6480464epigallocatechin gallate results in decreased expression of DDX60 mRNACTDPMID:32512070
Ddx60Rat1,2-dichloroethane decreases expressionISODdx60 (Mus musculus)6480464ethylene dichloride results in decreased expression of DDX60 mRNACTDPMID:28960355
Ddx60Rat1,2-dimethylhydrazine decreases expressionISODdx60 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of DDX60 mRNACTDPMID:22206623
Ddx60Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in increased expression of DDX60 mRNA and [estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of DDX60 mRNACTDPMID:26496021 and PMID:32741896
Ddx60Rat17beta-estradiol decreases expressionISODdx60 (Mus musculus)6480464Estradiol results in decreased expression of DDX60 mRNACTDPMID:39298647
Ddx60Rat17beta-estradiol increases expressionISODDX60 (Homo sapiens)6480464Estradiol results in increased expression of DDX60 mRNACTDPMID:19619570 and PMID:21185374
Ddx60Rat17beta-estradiol increases expressionISODdx60 (Mus musculus)6480464Estradiol results in increased expression of DDX60 mRNACTDPMID:19484750
Ddx60Rat17beta-estradiol multiple interactionsISODDX60 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of DDX60 mRNA and [Estradiol co-treated with TGFB1 protein] results in decreased expression of DDX60 mRNACTDPMID:19619570 and PMID:30165855
Ddx60Rat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of DDX60 mRNACTDPMID:32741896
Ddx60Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISODdx60 (Mus musculus)64804642 more ...CTDPMID:30294300
Ddx60Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISODDX60 (Homo sapiens)64804642 more ...CTDPMID:31675489
Ddx60Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISODDX60 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of DDX60 mRNACTDPMID:16704738 and PMID:19619570
Ddx60Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISODdx60 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of DDX60 mRNACTDPMID:26377647
Ddx60Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISODDX60 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of DDX60 mRNACTDPMID:19619570
Ddx60Rat2,4,6-tribromophenol decreases expressionISODDX60 (Homo sapiens)64804642 more ...CTDPMID:31675489
Ddx60Rat2,6-dimethoxyphenol multiple interactionsISODDX60 (Homo sapiens)6480464[Furaldehyde co-treated with pyrogallol 1 more ...CTDPMID:38598786

1 to 20 of 111 rows

Biological Process

  

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx60Ratcytoplasm is_active_inIBAMGI:2384570 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ddx60Ratcytoplasm located_inISODdx60 (Mus musculus)1624291 PMID:21791617RGDPMID:21791617
Ddx60Ratcytoplasm located_inISODDX60 (Homo sapiens)1624291 PMID:21791617RGDPMID:21791617
Ddx60Ratcytosol located_inISODDX60 (Homo sapiens)1624291 RGDGO_REF:0000052
Ddx60Ratintermediate filament cytoskeleton located_inISODDX60 (Homo sapiens)1624291 RGDGO_REF:0000052

Molecular Function
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ddx60RatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Ddx60RatATP binding enablesIEAInterPro:IPR0115451600115GO_REF:0000002InterProGO_REF:0000002
Ddx60Ratdouble-stranded DNA binding enablesISODDX60 (Homo sapiens)1624291 PMID:21791617RGDPMID:21791617
Ddx60Ratdouble-stranded RNA binding enablesISODDX60 (Homo sapiens)1624291 PMID:21791617RGDPMID:21791617
Ddx60Ratdouble-stranded RNA binding enablesIBAPANTHER:PTN002549586 and UniProtKB:Q8IY211600115GO_REF:0000033GO_CentralGO_REF:0000033
Ddx60Rathelicase activity enablesIEAUniProtKB-KW:KW-03471600115GO_REF:0000043UniProtGO_REF:0000043
Ddx60Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Ddx60Ratnucleic acid binding enablesIEAInterPro:IPR0115451600115GO_REF:0000002InterProGO_REF:0000002
Ddx60Ratnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Ddx60Ratprotein binding enablesISODDX60 (Homo sapiens)1624291UniProtKB:O95786 more ...RGDPMID:21791617 and PMID:30833792
Ddx60Ratprotein binding enablesISODdx60 (Mus musculus)1624291PR:Q6Q899 more ...RGDPMID:21791617
Ddx60RatRNA binding enablesISODdx60 (Mus musculus)1624291 PMID:21791617RGDPMID:21791617
Ddx60Ratsingle-stranded RNA binding enablesISODDX60 (Homo sapiens)1624291 PMID:21791617RGDPMID:21791617
Ddx60Ratsingle-stranded RNA binding enablesIBAPANTHER:PTN002549586 and UniProtKB:Q8IY211600115GO_REF:0000033GO_CentralGO_REF:0000033
1 to 14 of 14 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:21791617  



Ddx60
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81633,087,940 - 33,208,843 (-)NCBIGRCr8
mRatBN7.21628,077,000 - 28,197,903 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01629,816,144 - 29,936,220 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1629,834,086 - 29,936,307 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01629,666,917 - 29,799,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41630,934,840 - 31,080,644 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1628,069,864 - 28,080,236 (-)NCBICelera
Cytogenetic Map16p12NCBI
DDX60
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384168,216,294 - 168,325,979 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4168,216,291 - 168,318,883 (-)EnsemblGRCh38hg38GRCh38
GRCh374169,137,445 - 169,239,903 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364169,374,020 - 169,476,478 (-)NCBINCBI36Build 36hg18NCBI36
Celera4166,467,307 - 166,569,805 (-)NCBICelera
Cytogenetic Map4q32.3NCBI
HuRef4164,890,816 - 164,992,748 (-)NCBIHuRef
CHM1_14169,114,069 - 169,216,585 (-)NCBICHM1_1
T2T-CHM13v2.04171,575,326 - 171,684,983 (-)NCBIT2T-CHM13v2.0
Ddx60
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39862,381,155 - 62,491,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl862,381,121 - 62,491,278 (+)EnsemblGRCm39 Ensembl
GRCm38861,928,073 - 62,037,704 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl861,928,087 - 62,038,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv37864,406,886 - 64,516,492 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36864,820,231 - 64,929,843 (+)NCBIMGSCv36mm8
Celera864,500,606 - 64,610,201 (+)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map831.51NCBI
Ddx60
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540337,679,730 - 37,765,886 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540337,679,939 - 37,765,074 (+)NCBIChiLan1.0ChiLan1.0
DDX60
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23165,926,498 - 166,083,716 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14166,281,937 - 166,439,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04160,376,930 - 160,532,561 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14172,501,059 - 172,603,180 (-)NCBIpanpan1.1PanPan1.1panPan2
DDX60
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11563,649,441 - 63,741,357 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1563,649,875 - 63,734,920 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1563,841,588 - 63,933,794 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01564,515,555 - 64,608,252 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11563,738,274 - 63,830,849 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01563,734,311 - 63,826,810 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01564,122,356 - 64,214,849 (-)NCBIUU_Cfam_GSD_1.0
Ddx60
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494320,234,894 - 20,327,258 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936516649,191 - 731,639 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936516649,217 - 735,499 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX60
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1421,083,350 - 21,163,561 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11421,077,491 - 21,163,563 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21422,291,771 - 22,365,670 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DDX60
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17114,474,678 - 114,578,749 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7114,474,680 - 114,578,563 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603794,360,369 - 94,464,299 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in Ddx60
1184 total Variants

1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat

1 to 10 of 26 rows
D16Got31  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21627,910,291 - 27,910,525 (+)MAPPERmRatBN7.2
Rnor_6.01629,906,836 - 29,907,067NCBIRnor6.0
Rnor_5.01629,769,941 - 29,770,172UniSTSRnor5.0
RGSC_v3.41630,909,762 - 30,910,004RGDRGSC3.4
RGSC_v3.41630,909,763 - 30,910,004UniSTSRGSC3.4
RGSC_v3.11630,909,837 - 30,910,079RGD
Celera1628,076,920 - 28,077,151UniSTS
RH 2.0 Map16365.0RGD
AI171488  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21627,906,909 - 27,907,049 (+)MAPPERmRatBN7.2
mRatBN7.21628,147,232 - 28,147,372 (+)MAPPERmRatBN7.2
Rnor_6.01629,903,195 - 29,903,334NCBIRnor6.0
Rnor_5.01629,766,300 - 29,766,439UniSTSRnor5.0
RGSC_v3.41630,904,710 - 30,904,849UniSTSRGSC3.4
Celera1628,073,538 - 28,073,677UniSTS
RH 3.4 Map16332.3UniSTS
RH141454  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21628,077,021 - 28,077,222 (+)MAPPERmRatBN7.2
Rnor_6.01629,804,760 - 29,804,960NCBIRnor6.0
Rnor_5.01629,666,939 - 29,667,139UniSTSRnor5.0
RGSC_v3.41631,081,045 - 31,081,245UniSTSRGSC3.4
RGSC_v3.41630,818,200 - 30,818,400UniSTSRGSC3.4
Celera1627,878,341 - 27,878,541UniSTS
RH 3.4 Map16296.19UniSTS
AI179266  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X58,702,517 - 58,702,657 (+)MAPPERmRatBN7.2
Rnor_6.0X63,058,966 - 63,059,105NCBIRnor6.0
Rnor_6.01629,864,108 - 29,864,246NCBIRnor6.0
Rnor_5.01629,725,091 - 29,725,229UniSTSRnor5.0
Rnor_5.0X63,648,901 - 63,649,040UniSTSRnor5.0
CeleraX59,138,853 - 59,138,992UniSTS
Cytogenetic MapXq31UniSTS







Ensembl Acc Id: ENSRNOT00000083943   ⟹   ENSRNOP00000072550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084847   ⟹   ENSRNOP00000074273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088707   ⟹   ENSRNOP00000074057
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095521   ⟹   ENSRNOP00000096643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096189   ⟹   ENSRNOP00000095966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100929   ⟹   ENSRNOP00000087637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101108   ⟹   ENSRNOP00000084996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106980   ⟹   ENSRNOP00000091014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112917   ⟹   ENSRNOP00000097374
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119308   ⟹   ENSRNOP00000076782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1628,076,999 - 28,179,526 (-)Ensembl
RefSeq Acc Id: NM_001419856   ⟹   NP_001406785
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,087,988 - 33,208,839 (-)NCBI
mRatBN7.21628,077,048 - 28,197,900 (-)NCBI
RefSeq Acc Id: XM_039095171   ⟹   XP_038951099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,097,621 - 33,208,843 (-)NCBI
mRatBN7.21628,086,681 - 28,197,900 (-)NCBI
RefSeq Acc Id: XM_039095173   ⟹   XP_038951101
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,134,221 - 33,208,843 (-)NCBI
mRatBN7.21628,123,311 - 28,197,900 (-)NCBI
RefSeq Acc Id: XM_039095174   ⟹   XP_038951102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,136,655 - 33,208,843 (-)NCBI
mRatBN7.21628,125,715 - 28,197,900 (-)NCBI
RefSeq Acc Id: XM_063274957   ⟹   XP_063131027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,087,940 - 33,208,839 (-)NCBI
RefSeq Acc Id: XM_063274958   ⟹   XP_063131028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,087,940 - 33,208,843 (-)NCBI
RefSeq Acc Id: XM_063274959   ⟹   XP_063131029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,087,940 - 33,208,842 (-)NCBI
RefSeq Acc Id: XM_063274960   ⟹   XP_063131030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,087,940 - 33,208,705 (-)NCBI
RefSeq Acc Id: XM_063274961   ⟹   XP_063131031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,087,940 - 33,208,843 (-)NCBI
RefSeq Acc Id: XM_063274962   ⟹   XP_063131032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81633,087,940 - 33,208,843 (-)NCBI
1 to 5 of 20 rows
1 to 5 of 20 rows
RefSeq Acc Id: XP_038951099   ⟸   XM_039095171
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K744 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951101   ⟸   XM_039095173
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038951102   ⟸   XM_039095174
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000096643   ⟸   ENSRNOT00000095521
Ensembl Acc Id: ENSRNOP00000084996   ⟸   ENSRNOT00000101108
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K744-F1-model_v2 AlphaFold A0A0G2K744 1-1374 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 43 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-11595 BioCyc
Ensembl Genes ENSRNOG00000059097 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083943.2 UniProtKB/TrEMBL
  ENSRNOT00000084847.2 UniProtKB/TrEMBL
  ENSRNOT00000088707 ENTREZGENE
  ENSRNOT00000088707.2 UniProtKB/TrEMBL
  ENSRNOT00000095521.1 UniProtKB/TrEMBL
  ENSRNOT00000096189.1 UniProtKB/TrEMBL
  ENSRNOT00000100929.1 UniProtKB/TrEMBL
  ENSRNOT00000101108.1 UniProtKB/TrEMBL
  ENSRNOT00000106980.1 UniProtKB/TrEMBL
  ENSRNOT00000112917.1 UniProtKB/TrEMBL
  ENSRNOT00000119308.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PIN-like_DDX60 UniProtKB/TrEMBL
  SKI2_subfamily_helicases UniProtKB/TrEMBL
NCBI Gene Ddx60 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE DDX60-RELATED UniProtKB/TrEMBL
  DEAD/H RNA HELICASE, PUTATIVE-RELATED UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  PIN-like_DDX60 UniProtKB/TrEMBL
PhenoGen Ddx60 PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000059097 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2K396_RAT UniProtKB/TrEMBL
  A0A0G2K744 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K7M9_RAT UniProtKB/TrEMBL
  A0A8I5XVE3_RAT UniProtKB/TrEMBL
  A0A8I6A0R3_RAT UniProtKB/TrEMBL
  A0A8I6ABA4_RAT UniProtKB/TrEMBL
  A0A8I6AQP8_RAT UniProtKB/TrEMBL
1 to 40 of 43 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Ddx60  DEXD/H-box helicase 60  AABR07025140.1    Data merged from RGD:15012295 737654 PROVISIONAL
2021-03-09 Ddx60  DEXD/H-box helicase 60  LOC100911190  probable ATP-dependent RNA helicase DDX60-like  Data merged from RGD:6494112 737654 PROVISIONAL
2019-11-08 AABR07025140.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-01-13 Ddx60  DEXD/H-box helicase 60  Ddx60  DEAD (Asp-Glu-Ala-Asp) box polypeptide 60  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 LOC100911190  probable ATP-dependent RNA helicase DDX60-like  LOC306407  hypothetical LOC306407  Data merged from RGD:1587355 737654 PROVISIONAL
2012-07-05 LOC100911190  probable ATP-dependent RNA helicase DDX60-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-02 Ddx60  DEAD (Asp-Glu-Ala-Asp) box polypeptide 60  LOC100360801  mCG11385-like  Data merged from RGD:2321357 1643240 APPROVED
2010-05-05 LOC100360801  mCG11385-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-28 Ddx60  DEAD (Asp-Glu-Ala-Asp) box polypeptide 60  RGD1560014_predicted  similar to hypothetical protein FLJ20035 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC306407  hypothetical LOC306407      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1560014_predicted  similar to hypothetical protein FLJ20035 (predicted)  LOC306409  similar to hypothetical protein FLJ20035  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC306409  similar to hypothetical protein FLJ20035      Symbol and Name status set to provisional 70820 PROVISIONAL