Cdk5r2 (cyclin dependent kinase 5, regulatory subunit 2) - Rat Genome Database

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Gene: Cdk5r2 (cyclin dependent kinase 5, regulatory subunit 2) Mus musculus
Analyze
Symbol: Cdk5r2
Name: cyclin dependent kinase 5, regulatory subunit 2
RGD ID: 1558190
MGI Page MGI
Description: Enables actin binding activity and cyclin-dependent protein serine/threonine kinase activator activity. Acts upstream of or within nervous system development; positive regulation of calcium ion-dependent exocytosis; and positive regulation of protein kinase activity. Located in cytoplasm. Is active in presynapse. Is expressed in several structures, including nervous system and retina. Orthologous to human CDK5R2 (cyclin dependent kinase 5 regulatory subunit 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B230310J22Rik; CDK5 activator 2; cyclin dependent kinase 5, regulatory subunit 2 (p39); cyclin-dependent kinase 5 activator 2; cyclin-dependent kinase 5 regulatory subunit 2; cyclin-dependent kinase 5, regulatory subunit 2 (p39); p3; p39; p39I; RIKEN cDNA B230310J22 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,894,188 - 74,896,891 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,894,093 - 74,896,891 (+)EnsemblGRCm39 Ensembl
GRCm38174,855,029 - 74,857,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,854,934 - 74,857,732 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,901,603 - 74,904,306 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,788,305 - 74,789,414 (+)NCBIMGSCv36mm8
Celera175,410,113 - 75,412,816 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,ISO)
growth cone  (IBA,IEA,ISO)
membrane  (ISO)
neuron projection  (ISO)
plasma membrane  (IEA)
presynapse  (IDA,IEP)
protein kinase 5 complex  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9581970   PMID:9655938   PMID:10349636   PMID:10683146   PMID:10923673   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11226314   PMID:11239428   PMID:11517264  
PMID:11859196   PMID:12223541   PMID:12466851   PMID:12477932   PMID:12496365   PMID:12516540   PMID:12699769   PMID:14985430   PMID:15123626   PMID:15226823   PMID:15908038   PMID:16141072  
PMID:16141073   PMID:16600913   PMID:16602821   PMID:18507738   PMID:19017796   PMID:21267068   PMID:21873635   PMID:22398430   PMID:23029270   PMID:23645679   PMID:24085300   PMID:24872417  
PMID:24877974   PMID:25404468   PMID:26961956   PMID:27480591   PMID:27807169   PMID:28969475   PMID:33127972   PMID:35165395   PMID:35674931   PMID:38824254  


Genomics

Comparative Map Data
Cdk5r2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,894,188 - 74,896,891 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,894,093 - 74,896,891 (+)EnsemblGRCm39 Ensembl
GRCm38174,855,029 - 74,857,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,854,934 - 74,857,732 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,901,603 - 74,904,306 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,788,305 - 74,789,414 (+)NCBIMGSCv36mm8
Celera175,410,113 - 75,412,816 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
CDK5R2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,959,666 - 218,962,155 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,959,666 - 218,962,155 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,824,388 - 219,826,877 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,532,642 - 219,535,121 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,649,902 - 219,652,381NCBI
Celera2213,594,140 - 213,596,619 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,678,607 - 211,680,905 (+)NCBIHuRef
CHM1_12219,831,707 - 219,834,234 (+)NCBICHM1_1
T2T-CHM13v2.02219,448,040 - 219,450,529 (+)NCBIT2T-CHM13v2.0
Cdk5r2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,864,922 - 83,866,390 (+)NCBIGRCr8
mRatBN7.2976,416,251 - 76,417,719 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,416,062 - 76,418,344 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,861,411 - 84,862,879 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,990,363 - 89,991,831 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,376,512 - 88,377,980 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,120,059 - 82,121,527 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,120,059 - 82,121,527 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,888,640 - 81,890,108 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,191,842 - 74,193,310 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera973,987,770 - 73,989,238 (+)NCBICelera
Cytogenetic Map9q33NCBI
Cdk5r2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,472,757 - 14,473,896 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,471,625 - 14,474,082 (-)NCBIChiLan1.0ChiLan1.0
CDK5R2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,590,822 - 121,593,341 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,605,794 - 121,608,306 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,217,926 - 106,220,444 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,810,584 - 224,813,739 (+)NCBIpanpan1.1PanPan1.1panPan2
CDK5R2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,528,934 - 25,535,795 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,529,151 - 25,530,263 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,349,294 - 26,350,503 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,544,512 - 25,545,721 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13725,449,138 - 25,450,347 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,384,173 - 25,385,381 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,404,961 - 25,406,170 (+)NCBIUU_Cfam_GSD_1.0
Cdk5r2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,038,311 - 175,040,812 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,381,262 - 1,382,365 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,381,101 - 1,383,593 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK5R2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,985,257 - 120,986,354 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,985,069 - 120,990,864 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,924,680 - 133,927,298 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDK5R2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,858,260 - 104,860,795 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,858,461 - 104,859,564 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,532,588 - 94,535,131 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdk5r2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,053,550 - 6,054,659 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,053,469 - 6,054,748 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:694
Count of miRNA genes:396
Interacting mature miRNAs:461
Transcripts:ENSMUST00000160379
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse

Markers in Region
UniSTS:484839  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38174,855,098 - 74,856,207UniSTSGRCm38
MGSCv37174,901,672 - 74,902,781UniSTSGRCm37
Celera175,410,182 - 75,411,291UniSTS
Cytogenetic Map1C3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000160379   ⟹   ENSMUSP00000125322
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl174,894,093 - 74,896,891 (+)Ensembl
GRCm38.p6 Ensembl174,854,934 - 74,857,732 (+)Ensembl
RefSeq Acc Id: NM_009872   ⟹   NP_034002
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39174,894,188 - 74,896,891 (+)NCBI
GRCm38174,855,029 - 74,857,732 (+)ENTREZGENE
MGSCv37174,901,603 - 74,904,306 (+)RGD
Celera175,410,113 - 75,412,816 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_034002   ⟸   NM_009872
- UniProtKB: O35277 (UniProtKB/Swiss-Prot),   Q9QYD1 (UniProtKB/Swiss-Prot),   O35926 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000125322   ⟸   ENSMUST00000160379

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35926-F1-model_v2 AlphaFold O35926 1-369 view protein structure

Promoters
RGD ID:6874104
Promoter ID:EPDNEW_M503
Type:initiation region
Name:Cdk5r2_1
Description:Mus musculus cyclin-dependent kinase 5, regulatory subunit 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38174,854,938 - 74,854,998EPDNEW
RGD ID:6817500
Promoter ID:MM_KWN:1202
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:ENSMUST00000041620,   NM_009872
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36174,901,416 - 74,903,217 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1330828 AgrOrtholog
Ensembl Genes ENSMUSG00000033204
  ENSMUSG00000090071 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000160379 ENTREZGENE
  ENSMUST00000160379.4 UniProtKB/Swiss-Prot
Gene3D-CATH Cyclin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CDK5_activator UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12570 UniProtKB/Swiss-Prot
MGD MGI:1330828 ENTREZGENE
NCBI Gene 12570 ENTREZGENE
PANTHER CYCLIN-DEPENDENT KINASE 5 ACTIVATOR 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23401 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CDK5_activator UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdk5r2 PhenoGen
PIRSF Cdk5_activator UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CD5R2_MOUSE UniProtKB/Swiss-Prot
  O35277 ENTREZGENE
  O35926 ENTREZGENE
  Q496T6_MOUSE UniProtKB/TrEMBL
  Q496T7_MOUSE UniProtKB/TrEMBL
  Q9QYD1 ENTREZGENE
UniProt Secondary O35277 UniProtKB/Swiss-Prot
  Q9QYD1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Cdk5r2  cyclin dependent kinase 5, regulatory subunit 2  Cdk5r2  cyclin dependent kinase 5, regulatory subunit 2 (p39)  Symbol and/or name change 5135510 APPROVED
2023-05-02 Cdk5r2  cyclin dependent kinase 5, regulatory subunit 2 (p39)  Cdk5r2  cyclin-dependent kinase 5, regulatory subunit 2 (p39)  Symbol and/or name change 5135510 APPROVED
2016-04-05 Cdk5r2  cyclin-dependent kinase 5, regulatory subunit 2 (p39)  B230310J22Rik  RIKEN cDNA B230310J22 gene  Data merged from RGD:1610962 737654 PROVISIONAL