Jaml (junction adhesion molecule like) - Rat Genome Database

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Gene: Jaml (junction adhesion molecule like) Mus musculus
Analyze
Symbol: Jaml
Name: junction adhesion molecule like
RGD ID: 1558021
MGI Page MGI
Description: Predicted to enable integrin binding activity and protein homodimerization activity. Involved in gamma-delta T cell activation and positive regulation of epithelial cell proliferation involved in wound healing. Located in plasma membrane. Orthologous to human JAML (junction adhesion molecule like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adhesion molecule AMICA; adhesion molecule, interacts with CXADR antigen 1; Ami; AMICA; Amica1; Crea7; dendritic cell-specific protein CREA7; dendritic-cell specific protein Crea7; Gm638; junctional adhesion molecule-like; mCrea7; MGC61025
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,990,451 - 45,019,829 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,990,481 - 45,019,832 (+)EnsemblGRCm39 Ensembl
GRCm38945,079,153 - 45,108,531 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,079,183 - 45,108,534 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,887,266 - 44,916,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,830,178 - 44,858,846 (+)NCBIMGSCv36mm8
Celera942,354,372 - 42,384,066 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:16141072   PMID:17690169   PMID:20562862   PMID:20813954   PMID:20813955   PMID:21220118   PMID:21873635   PMID:25826454   PMID:28378742   PMID:28973166   PMID:30055289  
PMID:31101724   PMID:33186558   PMID:34427588   PMID:35708906   PMID:37619972   PMID:38625487  


Genomics

Comparative Map Data
Jaml
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,990,451 - 45,019,829 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,990,481 - 45,019,832 (+)EnsemblGRCm39 Ensembl
GRCm38945,079,153 - 45,108,531 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,079,183 - 45,108,534 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,887,266 - 44,916,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,830,178 - 44,858,846 (+)NCBIMGSCv36mm8
Celera942,354,372 - 42,384,066 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
JAML
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,193,725 - 118,225,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,193,725 - 118,225,092 (-)EnsemblGRCh38hg38GRCh38
GRCh3711118,064,440 - 118,095,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,569,652 - 117,601,019 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411117,569,887 - 117,589,284NCBI
Celera11115,222,323 - 115,253,688 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11113,998,029 - 114,029,386 (-)NCBIHuRef
CHM1_111117,950,433 - 117,981,803 (-)NCBICHM1_1
T2T-CHM13v2.011118,210,112 - 118,241,400 (-)NCBIT2T-CHM13v2.0
Jaml
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,281,596 - 54,313,655 (+)NCBIGRCr8
mRatBN7.2845,384,836 - 45,415,459 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,383,495 - 45,416,565 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0849,378,644 - 49,408,894 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,378,644 - 49,410,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,005,653 - 48,035,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,034,107 - 48,058,837 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera844,971,071 - 45,000,065 (+)NCBICelera
Cytogenetic Map8q22NCBI
Jaml
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541219,363,501 - 19,402,213 (-)NCBIChiLan1.0ChiLan1.0
JAML
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29118,894,334 - 118,915,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111119,999,301 - 120,020,445 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,027,829 - 113,062,344 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111116,960,436 - 116,994,373 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11116,960,436 - 116,994,373 (-)Ensemblpanpan1.1panPan2
JAML
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,485,378 - 15,513,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,476,582 - 15,513,075 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,536,025 - 15,564,323 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,427,439 - 15,455,677 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,418,851 - 15,455,673 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,565,458 - 15,593,741 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,468,979 - 15,497,282 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,510,292 - 15,538,609 (+)NCBIUU_Cfam_GSD_1.0
Jaml
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,363,014 - 100,390,854 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365423,284,445 - 3,312,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JAML
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,505,907 - 45,534,863 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,506,496 - 45,537,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,547,537 - 50,576,129 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JAML
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,570,498 - 109,605,273 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604316,425,105 - 16,459,921 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jaml
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478413,601,368 - 13,625,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Jaml
1138 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:305
Count of miRNA genes:234
Interacting mature miRNAs:269
Transcripts:ENSMUST00000050020
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
12738415Lfibq8_mliver fibrosis QTL 8 (mouse)94140216245343743Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
13432191Actrse4_mactivity response to saline/ethanol 4 (mouse)94370321448603195Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse

Markers in Region
GDB:315025  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38945,084,919 - 45,085,471UniSTSGRCm38
MGSCv37944,893,002 - 44,893,554UniSTSGRCm37
Celera942,360,098 - 42,360,650UniSTS
Cytogenetic Map9A5.2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001005421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA120429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA798428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY093688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX520654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ139627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ141417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ231590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000050020   ⟹   ENSMUSP00000052033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,990,481 - 45,019,832 (+)Ensembl
GRCm38.p6 Ensembl945,079,183 - 45,108,534 (+)Ensembl
Ensembl Acc Id: ENSMUST00000215098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,015,158 - 45,018,751 (+)Ensembl
GRCm38.p6 Ensembl945,103,860 - 45,107,453 (+)Ensembl
Ensembl Acc Id: ENSMUST00000215266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,014,272 - 45,018,947 (+)Ensembl
GRCm38.p6 Ensembl945,102,974 - 45,107,649 (+)Ensembl
Ensembl Acc Id: ENSMUST00000215880   ⟹   ENSMUSP00000150697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,995,244 - 45,019,188 (+)Ensembl
GRCm38.p6 Ensembl945,083,946 - 45,107,890 (+)Ensembl
Ensembl Acc Id: ENSMUST00000216333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,997,787 - 45,005,051 (+)Ensembl
GRCm38.p6 Ensembl945,086,489 - 45,093,753 (+)Ensembl
Ensembl Acc Id: ENSMUST00000216426   ⟹   ENSMUSP00000150449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,990,528 - 45,009,102 (+)Ensembl
GRCm38.p6 Ensembl945,079,230 - 45,097,804 (+)Ensembl
Ensembl Acc Id: ENSMUST00000217074   ⟹   ENSMUSP00000149913
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl945,014,092 - 45,018,990 (+)Ensembl
GRCm38.p6 Ensembl945,102,794 - 45,107,692 (+)Ensembl
RefSeq Acc Id: NM_001005421   ⟹   NP_001005421
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,990,481 - 45,019,829 (+)NCBI
GRCm38945,079,183 - 45,108,531 (+)NCBI
MGSCv37944,887,266 - 44,916,614 (+)RGD
Celera942,354,372 - 42,384,066 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510382   ⟹   XP_006510445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,990,451 - 45,019,829 (+)NCBI
GRCm38945,079,153 - 45,108,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510383   ⟹   XP_006510446
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,993,318 - 45,019,829 (+)NCBI
GRCm38945,081,999 - 45,108,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510384   ⟹   XP_006510447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,990,474 - 45,019,829 (+)NCBI
GRCm38945,079,211 - 45,108,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510385   ⟹   XP_006510448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,996,562 - 45,019,829 (+)NCBI
GRCm38945,085,323 - 45,108,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510386   ⟹   XP_006510449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,996,562 - 45,019,829 (+)NCBI
GRCm38945,085,323 - 45,108,531 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155029   ⟹   XP_036010922
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39945,004,302 - 45,019,829 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001005421   ⟸   NM_001005421
- Peptide Label: precursor
- UniProtKB: E9QNV7 (UniProtKB/Swiss-Prot),   Q5DTC4 (UniProtKB/Swiss-Prot),   Q80UL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510445   ⟸   XM_006510382
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006510447   ⟸   XM_006510384
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006510446   ⟸   XM_006510383
- Peptide Label: isoform X2
- UniProtKB: E9QNV7 (UniProtKB/Swiss-Prot),   Q5DTC4 (UniProtKB/Swiss-Prot),   Q80UL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510449   ⟸   XM_006510386
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006510448   ⟸   XM_006510385
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSMUSP00000149913   ⟸   ENSMUST00000217074
Ensembl Acc Id: ENSMUSP00000150449   ⟸   ENSMUST00000216426
Ensembl Acc Id: ENSMUSP00000052033   ⟸   ENSMUST00000050020
Ensembl Acc Id: ENSMUSP00000150697   ⟸   ENSMUST00000215880
RefSeq Acc Id: XP_036010922   ⟸   XM_036155029
- Peptide Label: isoform X4
Protein Domains
Ig-like   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80UL9-F1-model_v2 AlphaFold Q80UL9 1-379 view protein structure

Promoters
RGD ID:6844140
Promoter ID:MM_KWN:57171
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   Spleen
Transcripts:NM_001005421
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36944,886,686 - 44,887,567 (+)MPROMDB
RGD ID:8669432
Promoter ID:EPDNEW_M12747
Type:initiation region
Name:Jaml_1
Description:Mus musculus junction adhesion molecule like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38945,079,229 - 45,079,289EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685484 AgrOrtholog
Ensembl Genes ENSMUSG00000048534 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000050020 ENTREZGENE
  ENSMUST00000050020.8 UniProtKB/Swiss-Prot
  ENSMUST00000215880.2 UniProtKB/Swiss-Prot
  ENSMUST00000216426.2 UniProtKB/TrEMBL
  ENSMUST00000217074.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myelin_P0-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:270152 UniProtKB/Swiss-Prot
MGD MGI:2685484 ENTREZGENE
NCBI Gene 270152 ENTREZGENE
PANTHER PTHR13869 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13869:SF22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Jaml PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot
  IGv UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SSJ0_MOUSE UniProtKB/TrEMBL
  A0A1L1STQ5_MOUSE UniProtKB/TrEMBL
  E9QNV7 ENTREZGENE
  JAML_MOUSE UniProtKB/Swiss-Prot
  Q5DTC4 ENTREZGENE
  Q80UL9 ENTREZGENE
UniProt Secondary E9QNV7 UniProtKB/Swiss-Prot
  Q5DTC4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-24 Jaml  junction adhesion molecule like  Amica1  adhesion molecule, interacts with CXADR antigen 1  Symbol and/or name change 5135510 APPROVED