JAML (junction adhesion molecule like) - Rat Genome Database

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Gene: JAML (junction adhesion molecule like) Sus scrofa
Analyze
Symbol: JAML
Name: junction adhesion molecule like
RGD ID: 14148591
Description: ENCODES a protein that exhibits cell adhesion molecule binding (inferred); integrin binding (inferred); protein homodimerization activity (inferred); INVOLVED IN gamma-delta T cell activation (ortholog); positive regulation of epithelial cell proliferation involved in wound healing (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); Dwarfism (ortholog); FOUND IN bicellular tight junction (inferred); membrane (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adhesion molecule, interacts with CXADR antigen 1; AMICA1; junctional adhesion molecule-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,505,907 - 45,534,863 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,506,496 - 45,537,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,547,537 - 50,576,129 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
JAML
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,505,907 - 45,534,863 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,506,496 - 45,537,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,547,537 - 50,576,129 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JAML
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,193,725 - 118,225,011 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,193,725 - 118,225,092 (-)EnsemblGRCh38hg38GRCh38
GRCh3711118,064,440 - 118,095,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,569,652 - 117,601,019 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411117,569,887 - 117,589,284NCBI
Celera11115,222,323 - 115,253,688 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11113,998,029 - 114,029,386 (-)NCBIHuRef
CHM1_111117,950,433 - 117,981,803 (-)NCBICHM1_1
T2T-CHM13v2.011118,210,112 - 118,241,400 (-)NCBIT2T-CHM13v2.0
Jaml
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,990,451 - 45,019,829 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,990,481 - 45,019,832 (+)EnsemblGRCm39 Ensembl
GRCm38945,079,153 - 45,108,531 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,079,183 - 45,108,534 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,887,266 - 44,916,614 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,830,178 - 44,858,846 (+)NCBIMGSCv36mm8
Celera942,354,372 - 42,384,066 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Jaml
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,281,596 - 54,313,655 (+)NCBIGRCr8
mRatBN7.2845,384,836 - 45,415,459 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,383,495 - 45,416,565 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0849,378,644 - 49,408,894 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,378,644 - 49,410,088 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,005,653 - 48,035,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,034,107 - 48,058,837 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera844,971,071 - 45,000,065 (+)NCBICelera
Cytogenetic Map8q22NCBI
Jaml
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541219,363,501 - 19,402,213 (-)NCBIChiLan1.0ChiLan1.0
JAML
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29118,894,334 - 118,915,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111119,999,301 - 120,020,445 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,027,829 - 113,062,344 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111116,960,436 - 116,994,373 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11116,960,436 - 116,994,373 (-)Ensemblpanpan1.1panPan2
JAML
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,485,378 - 15,513,457 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,476,582 - 15,513,075 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,536,025 - 15,564,323 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,427,439 - 15,455,677 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,418,851 - 15,455,673 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,565,458 - 15,593,741 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,468,979 - 15,497,282 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,510,292 - 15,538,609 (+)NCBIUU_Cfam_GSD_1.0
Jaml
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,363,014 - 100,390,854 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365423,284,445 - 3,312,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JAML
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,570,498 - 109,605,273 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604316,425,105 - 16,459,921 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jaml
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478413,601,368 - 13,625,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in JAML
1033 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001244730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005653697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005653698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005653699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005653701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013977422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013977439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013977441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021102035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021102036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK238962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK389867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK398411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK399711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP102383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01068748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000016455   ⟹   ENSSSCP00000016012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl945,506,507 - 45,534,863 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000045125   ⟹   ENSSSCP00000052025
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl945,484,999 - 45,529,911 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000065319   ⟹   ENSSSCP00000050144
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl945,505,907 - 45,529,911 (-)Ensembl
RefSeq Acc Id: NM_001244730   ⟹   NP_001231659
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,532,674 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653697   ⟹   XP_005653754
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,534,905 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653698   ⟹   XP_005653755
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,537,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653699   ⟹   XP_005653756
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,534,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653701   ⟹   XP_005653758
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,526,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013977422   ⟹   XP_013832876
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,527,466 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013977439   ⟹   XP_013832893
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,534,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013977441   ⟹   XP_013832895
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,534,738 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102035   ⟹   XP_020957694
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,532,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102036   ⟹   XP_020957695
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1945,506,496 - 45,527,466 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005653755   ⟸   XM_005653698
- Peptide Label: isoform X2
- UniProtKB: A0A8D0ZJJ7 (UniProtKB/TrEMBL),   A0A287B164 (UniProtKB/TrEMBL),   A0A481AAI5 (UniProtKB/TrEMBL),   A0A4X1SU56 (UniProtKB/TrEMBL),   A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653754   ⟸   XM_005653697
- Peptide Label: isoform X2
- UniProtKB: A0A8D0ZJJ7 (UniProtKB/TrEMBL),   A0A287B164 (UniProtKB/TrEMBL),   A0A481AAI5 (UniProtKB/TrEMBL),   A0A4X1SU56 (UniProtKB/TrEMBL),   A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013832893   ⟸   XM_013977439
- Peptide Label: isoform X3
- UniProtKB: A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013832895   ⟸   XM_013977441
- Peptide Label: isoform X3
- UniProtKB: A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653756   ⟸   XM_005653699
- Peptide Label: isoform X2
- UniProtKB: A0A8D0ZJJ7 (UniProtKB/TrEMBL),   A0A287B164 (UniProtKB/TrEMBL),   A0A481AAI5 (UniProtKB/TrEMBL),   A0A4X1SU56 (UniProtKB/TrEMBL),   A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231659   ⟸   NM_001244730
- Peptide Label: precursor
- UniProtKB: A0A8D0ZJJ7 (UniProtKB/TrEMBL),   A0A287B164 (UniProtKB/TrEMBL),   A0A481AAI5 (UniProtKB/TrEMBL),   A0A4X1SU56 (UniProtKB/TrEMBL),   A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957694   ⟸   XM_021102035
- Peptide Label: isoform X2
- UniProtKB: A0A8D0ZJJ7 (UniProtKB/TrEMBL),   A0A287B164 (UniProtKB/TrEMBL),   A0A481AAI5 (UniProtKB/TrEMBL),   A0A4X1SU56 (UniProtKB/TrEMBL),   A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013832876   ⟸   XM_013977422
- Peptide Label: isoform X1
- UniProtKB: A0A8D1KX12 (UniProtKB/TrEMBL),   A0A8D1SKK6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957695   ⟸   XM_021102036
- Peptide Label: isoform X3
- UniProtKB: A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653758   ⟸   XM_005653701
- Peptide Label: isoform X3
- UniProtKB: A0A8D1NTK9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000050144   ⟸   ENSSSCT00000065319
Ensembl Acc Id: ENSSSCP00000016012   ⟸   ENSSSCT00000016455
Ensembl Acc Id: ENSSSCP00000052025   ⟸   ENSSSCT00000045125
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015089 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028613 UniProtKB/TrEMBL
  ENSSSCG00025008398 UniProtKB/TrEMBL
  ENSSSCG00035033080 UniProtKB/TrEMBL
  ENSSSCG00045015328 UniProtKB/TrEMBL
  ENSSSCG00050072467 UniProtKB/TrEMBL
  ENSSSCG00055018881 UniProtKB/TrEMBL
  ENSSSCG00060005125 UniProtKB/TrEMBL
  ENSSSCG00065070288 UniProtKB/TrEMBL
  ENSSSCG00070003740 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016455 ENTREZGENE
  ENSSSCT00000016455.4 UniProtKB/TrEMBL
  ENSSSCT00000065319 ENTREZGENE
  ENSSSCT00000065319.3 UniProtKB/TrEMBL
  ENSSSCT00005045353.1 UniProtKB/TrEMBL
  ENSSSCT00005045377.1 UniProtKB/TrEMBL
  ENSSSCT00005045395.1 UniProtKB/TrEMBL
  ENSSSCT00005045409.1 UniProtKB/TrEMBL
  ENSSSCT00005045419.1 UniProtKB/TrEMBL
  ENSSSCT00025011187.1 UniProtKB/TrEMBL
  ENSSSCT00025011194.1 UniProtKB/TrEMBL
  ENSSSCT00025011210.1 UniProtKB/TrEMBL
  ENSSSCT00025011218.1 UniProtKB/TrEMBL
  ENSSSCT00035043830.1 UniProtKB/TrEMBL
  ENSSSCT00035043838.1 UniProtKB/TrEMBL
  ENSSSCT00035043841.1 UniProtKB/TrEMBL
  ENSSSCT00035043848.1 UniProtKB/TrEMBL
  ENSSSCT00045025979.1 UniProtKB/TrEMBL
  ENSSSCT00045026052.1 UniProtKB/TrEMBL
  ENSSSCT00045026101.1 UniProtKB/TrEMBL
  ENSSSCT00045026167.1 UniProtKB/TrEMBL
  ENSSSCT00050098931.1 UniProtKB/TrEMBL
  ENSSSCT00050098942.1 UniProtKB/TrEMBL
  ENSSSCT00055036953.1 UniProtKB/TrEMBL
  ENSSSCT00055037082.1 UniProtKB/TrEMBL
  ENSSSCT00055037204.1 UniProtKB/TrEMBL
  ENSSSCT00055037316.1 UniProtKB/TrEMBL
  ENSSSCT00060006425.1 UniProtKB/TrEMBL
  ENSSSCT00065096517.1 UniProtKB/TrEMBL
  ENSSSCT00065096523.1 UniProtKB/TrEMBL
  ENSSSCT00065096536.1 UniProtKB/TrEMBL
  ENSSSCT00065096541.1 UniProtKB/TrEMBL
  ENSSSCT00070006992.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Myelin_P0-rel UniProtKB/TrEMBL
KEGG Report ssc:100512978 UniProtKB/TrEMBL
NCBI Gene JAML ENTREZGENE
PANTHER PTHR13869 UniProtKB/TrEMBL
  PTHR13869:SF22 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PRINTS MYELINP0 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A287B164 ENTREZGENE
  A0A481AAI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SU56 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JK17_PIG UniProtKB/TrEMBL
  A0A8D0QPX3_PIG UniProtKB/TrEMBL
  A0A8D0XM38_PIG UniProtKB/TrEMBL
  A0A8D0XNS1_PIG UniProtKB/TrEMBL
  A0A8D0ZFA4_PIG UniProtKB/TrEMBL
  A0A8D0ZJJ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HEG5_PIG UniProtKB/TrEMBL
  A0A8D1HEK8_PIG UniProtKB/TrEMBL
  A0A8D1KX12 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NTK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1R2N5_PIG UniProtKB/TrEMBL
  A0A8D1SKK6 ENTREZGENE, UniProtKB/TrEMBL
  F1SAL1_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287B164 UniProtKB/TrEMBL
  A0A8D0XTC8 UniProtKB/TrEMBL
VGNC ID VGNC:89278 ENTREZGENE