Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Npl | Mouse | cholestasis | | ISO | NPL (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27989131 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Watched Genes
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Analyze GeneStrainQTL List |
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Gene-Chemical Interaction Annotations Click to see Annotation Detail View
Gene Ontology Annotations Click to see Annotation Detail View
Biological Process
Cellular Component
Molecular Function
Molecular Pathway Annotations Click to see Annotation Detail View
Imported Annotations - SMPDB
Imported Annotations - KEGG (archival)
Phenotype Annotations Click to see Annotation Detail View
Mammalian Phenotype
Disease Annotations
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Gene-Chemical Interaction Annotations
Click to see Annotation Detail View
Gene Ontology Annotations
Click to see Annotation Detail View
Molecular Function
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Molecular Pathway Annotations
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Phenotype Annotations
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Mammalian Phenotype
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References
References - curated
| # | Reference Title | Reference Citation |
| 1. | Functional annotation of a full-length mouse cDNA collection. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
| 2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
| 3. | MGD IEA | MGD IEA |
| 4. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
| 5. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
| 6. | SMPDB Annotation Import Pipeline | Pipeline to import SMPDB annotations from SMPDB into RGD |
| 7. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
| 8. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 9. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Additional References at PubMed
| PMID:10349636 | PMID:10725249 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11180952 | PMID:11737202 | PMID:12477932 | PMID:14610273 | PMID:14681479 | PMID:15489334 | PMID:15741177 |
| PMID:16141072 | PMID:16141073 | PMID:18799693 | PMID:21677750 | PMID:21873635 | PMID:22692205 | PMID:23741500 | PMID:31598710 | PMID:31777931 | PMID:32325033 | PMID:34321999 | PMID:36178098 |
| PMID:37390204 | PMID:38060382 |
Genomics
Comparative Map Data
| Npl (Mus musculus - house mouse) |
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| NPL (Homo sapiens - human) |
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| Npl (Rattus norvegicus - Norway rat) |
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| Npl (Chinchilla lanigera - long-tailed chinchilla) |
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| NPL (Pan paniscus - bonobo/pygmy chimpanzee) |
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| NPL (Canis lupus familiaris - dog) |
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| Npl (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| NPL (Sus scrofa - pig) |
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| NPL (Chlorocebus sabaeus - green monkey) |
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| Npl (Heterocephalus glaber - naked mole-rat) |
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miRNA Target Status
Predicted Target Of
| The detailed report is available here: |  | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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QTLs in Region (GRCm39)
| The following QTLs overlap with this region. | | Full Report | | CSV | | TAB | | Printer | | Gviewer |
Markers in Region
| AV000645 |
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| Npl |
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Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
| RefSeq Transcripts | NM_028749 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AC099712 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AK002734 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AK088859 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC022734 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH466520 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSMUST00000041874 ⟹ ENSMUSP00000037454 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSMUST00000187747 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| RefSeq Acc Id: | NM_028749 ⟹ NP_083025 | ||||||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
Protein Sequences
| Protein RefSeqs | NP_083025 | (Get FASTA) | NCBI Sequence Viewer |
| GenBank Protein | AAH22734 | (Get FASTA) | NCBI Sequence Viewer |
| BAB22314 | (Get FASTA) | NCBI Sequence Viewer | |
| BAC40618 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL39435 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSMUSP00000037454 | ||
| ENSMUSP00000037454.8 | |||
| GenBank Protein | Q9DCJ9 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_083025 ⟸ NM_028749 |
| - UniProtKB: | Q9DCJ9 (UniProtKB/Swiss-Prot) |
| - Sequence: |
| Ensembl Acc Id: | ENSMUSP00000037454 ⟸ ENSMUST00000041874 |