Tm2d3 (TM2 domain containing 3) - Rat Genome Database

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Gene: Tm2d3 (TM2 domain containing 3) Mus musculus
Analyze
Symbol: Tm2d3
Name: TM2 domain containing 3
RGD ID: 1557398
MGI Page MGI
Description: Predicted to be involved in lateral inhibition. Predicted to be located in membrane. Orthologous to human TM2D3 (TM2 domain containing 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110025I09Rik; 5930422O05Rik; BBP-like protein 2; Blp2; TM2 domain-containing protein 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39765,343,204 - 65,351,650 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl765,340,917 - 65,351,661 (+)EnsemblGRCm39 Ensembl
GRCm38765,693,417 - 65,701,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl765,691,169 - 65,701,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv37772,838,303 - 72,846,799 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36765,570,121 - 65,580,857 (+)NCBIMGSCv36mm8
Celera763,106,694 - 63,115,960 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map735.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
lateral inhibition  (IEA,ISO)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:16141072   PMID:16141073   PMID:21267068   PMID:38016980   PMID:38355793  


Genomics

Comparative Map Data
Tm2d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39765,343,204 - 65,351,650 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl765,340,917 - 65,351,661 (+)EnsemblGRCm39 Ensembl
GRCm38765,693,417 - 65,701,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl765,691,169 - 65,701,913 (+)EnsemblGRCm38mm10GRCm38
MGSCv37772,838,303 - 72,846,799 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36765,570,121 - 65,580,857 (+)NCBIMGSCv36mm8
Celera763,106,694 - 63,115,960 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map735.26NCBI
TM2D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815101,632,977 - 101,652,381 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15101,621,444 - 101,652,391 (-)EnsemblGRCh38hg38GRCh38
GRCh3715102,173,180 - 102,192,584 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361599,999,572 - 100,010,117 (-)NCBINCBI36Build 36hg18NCBI36
Celera1578,595,626 - 78,606,219 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1578,305,847 - 78,316,388 (-)NCBIHuRef
CHM1_115102,023,180 - 102,033,724 (-)NCBICHM1_1
T2T-CHM13v2.01599,378,569 - 99,410,385 (-)NCBIT2T-CHM13v2.0
Tm2d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81128,677,680 - 128,687,580 (+)NCBIGRCr8
mRatBN7.21119,267,194 - 119,277,094 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1119,264,576 - 119,277,099 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1127,253,172 - 127,265,719 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,424,597 - 134,437,146 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01127,238,468 - 127,250,985 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01126,573,474 - 126,595,778 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1126,586,543 - 126,595,603 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01127,666,050 - 127,679,269 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41120,102,507 - 120,117,091 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1111,480,377 - 111,492,584 (+)NCBICelera
Cytogenetic Map1q22NCBI
Tm2d3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541628,499,634 - 28,507,867 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541628,499,077 - 28,507,907 (-)NCBIChiLan1.0ChiLan1.0
TM2D3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21691,237,996 - 91,259,824 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11594,923,661 - 94,958,955 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01580,357,201 - 80,392,500 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11599,655,558 - 99,666,052 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1599,647,402 - 99,666,445 (-)Ensemblpanpan1.1panPan2
TM2D3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1339,421,763 - 39,434,014 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl339,421,549 - 39,511,268 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha342,112,514 - 42,124,783 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0339,813,890 - 39,826,164 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl339,813,684 - 39,832,756 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1339,347,671 - 39,359,930 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0339,584,388 - 39,596,648 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0339,785,917 - 39,798,199 (+)NCBIUU_Cfam_GSD_1.0
Tm2d3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640144,114,733 - 144,123,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364832,210,913 - 2,220,399 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364832,210,949 - 2,219,345 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TM2D3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,359,731 - 145,384,212 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,359,693 - 145,371,218 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21311,079,780 - 311,091,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TM2D3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12920,094,911 - 20,104,639 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2920,094,275 - 20,104,642 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605926,435,092 - 26,445,250 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tm2d3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247683,184,107 - 3,191,980 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247683,184,034 - 3,210,477 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:395
Count of miRNA genes:227
Interacting mature miRNAs:243
Transcripts:ENSMUST00000032726, ENSMUST00000065574, ENSMUST00000107495, ENSMUST00000129166, ENSMUST00000143508
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
13506761Tbthq1_mtrabecular bone thickness QTL 1 (mouse)76234974867749748Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
13432171Rosd1_mrotarod saline difference 1 (mouse)75919437869004862Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000032726   ⟹   ENSMUSP00000032726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,156 - 65,351,650 (+)Ensembl
GRCm38.p6 Ensembl765,693,408 - 65,701,902 (+)Ensembl
Ensembl Acc Id: ENSMUST00000065574   ⟹   ENSMUSP00000064967
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,340,917 - 65,351,659 (+)Ensembl
GRCm38.p6 Ensembl765,691,169 - 65,701,911 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107495   ⟹   ENSMUSP00000103119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,165 - 65,351,661 (+)Ensembl
GRCm38.p6 Ensembl765,693,417 - 65,701,913 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129166   ⟹   ENSMUSP00000146099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,215 - 65,347,627 (+)Ensembl
GRCm38.p6 Ensembl765,693,467 - 65,697,879 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143508   ⟹   ENSMUSP00000116848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,195 - 65,347,480 (+)Ensembl
GRCm38.p6 Ensembl765,693,447 - 65,697,732 (+)Ensembl
Ensembl Acc Id: ENSMUST00000206361   ⟹   ENSMUSP00000145994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,272 - 65,348,900 (+)Ensembl
GRCm38.p6 Ensembl765,693,524 - 65,699,152 (+)Ensembl
Ensembl Acc Id: ENSMUST00000206517   ⟹   ENSMUSP00000145534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,225 - 65,351,650 (+)Ensembl
GRCm38.p6 Ensembl765,693,477 - 65,701,902 (+)Ensembl
Ensembl Acc Id: ENSMUST00000206628   ⟹   ENSMUSP00000146320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,272 - 65,347,622 (+)Ensembl
GRCm38.p6 Ensembl765,693,524 - 65,697,874 (+)Ensembl
Ensembl Acc Id: ENSMUST00000206837   ⟹   ENSMUSP00000146014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,229 - 65,344,975 (+)Ensembl
GRCm38.p6 Ensembl765,693,481 - 65,695,227 (+)Ensembl
Ensembl Acc Id: ENSMUST00000206934   ⟹   ENSMUSP00000145545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,343,224 - 65,351,648 (+)Ensembl
GRCm38.p6 Ensembl765,693,476 - 65,701,900 (+)Ensembl
RefSeq Acc Id: NM_001403392   ⟹   NP_001390321
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39765,343,204 - 65,351,650 (+)NCBI
RefSeq Acc Id: NM_001403393   ⟹   NP_001390322
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39765,343,204 - 65,351,650 (+)NCBI
RefSeq Acc Id: NM_001403394   ⟹   NP_001390323
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39765,343,204 - 65,351,650 (+)NCBI
RefSeq Acc Id: NM_001403395   ⟹   NP_001390324
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39765,343,204 - 65,351,650 (+)NCBI
RefSeq Acc Id: NM_026795   ⟹   NP_081071
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39765,343,204 - 65,351,650 (+)NCBI
GRCm38765,693,417 - 65,701,913 (+)ENTREZGENE
MGSCv37772,838,303 - 72,846,799 (+)RGD
Celera763,106,694 - 63,115,960 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_178056   ⟹   NP_835157
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39765,343,204 - 65,351,650 (+)NCBI
GRCm38765,693,417 - 65,701,913 (+)ENTREZGENE
MGSCv37772,838,303 - 72,846,799 (+)RGD
Celera763,106,694 - 63,115,960 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_835157   ⟸   NM_178056
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9D156 (UniProtKB/Swiss-Prot),   Q8BJ83 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_081071   ⟸   NM_026795
- Peptide Label: isoform 1
- UniProtKB: Q8BJ83 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000032726   ⟸   ENSMUST00000032726
Ensembl Acc Id: ENSMUSP00000064967   ⟸   ENSMUST00000065574
Ensembl Acc Id: ENSMUSP00000116848   ⟸   ENSMUST00000143508
Ensembl Acc Id: ENSMUSP00000146320   ⟸   ENSMUST00000206628
Ensembl Acc Id: ENSMUSP00000145545   ⟸   ENSMUST00000206934
Ensembl Acc Id: ENSMUSP00000146014   ⟸   ENSMUST00000206837
Ensembl Acc Id: ENSMUSP00000145994   ⟸   ENSMUST00000206361
Ensembl Acc Id: ENSMUSP00000145534   ⟸   ENSMUST00000206517
Ensembl Acc Id: ENSMUSP00000103119   ⟸   ENSMUST00000107495
Ensembl Acc Id: ENSMUSP00000146099   ⟸   ENSMUST00000129166
RefSeq Acc Id: NP_001390322   ⟸   NM_001403393
- Peptide Label: isoform 4
- UniProtKB: A0A0U1RNE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001390321   ⟸   NM_001403392
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001390323   ⟸   NM_001403394
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001390324   ⟸   NM_001403395
- Peptide Label: isoform 6
Protein Domains
TM2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BJ83-F1-model_v2 AlphaFold Q8BJ83 1-261 view protein structure

Promoters
RGD ID:8664369
Promoter ID:EPDNEW_M10215
Type:multiple initiation site
Name:Tm2d3_1
Description:Mus musculus TM2 domain containing 3 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38765,693,456 - 65,693,516EPDNEW
RGD ID:6842190
Promoter ID:MM_KWN:50937
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:ENSMUST00000065574
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36772,835,286 - 72,835,786 (+)MPROMDB
RGD ID:6842191
Promoter ID:MM_KWN:50938
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_178056,   OTTMUST00000061405,   OTTMUST00000061406,   UC009HGU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36772,838,064 - 72,838,564 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915884 AgrOrtholog
Ensembl Genes ENSMUSG00000078681 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032726 ENTREZGENE
  ENSMUST00000032726.14 UniProtKB/Swiss-Prot
  ENSMUST00000065574.9 UniProtKB/Swiss-Prot
  ENSMUST00000107495 ENTREZGENE
  ENSMUST00000107495.5 UniProtKB/Swiss-Prot
  ENSMUST00000129166.3 UniProtKB/TrEMBL
  ENSMUST00000143508.3 UniProtKB/TrEMBL
  ENSMUST00000206361.2 UniProtKB/TrEMBL
  ENSMUST00000206517 ENTREZGENE
  ENSMUST00000206517.2 UniProtKB/TrEMBL
  ENSMUST00000206628.2 UniProtKB/TrEMBL
  ENSMUST00000206837.2 UniProtKB/TrEMBL
  ENSMUST00000206934.2 UniProtKB/TrEMBL
InterPro TM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TM2_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68634 UniProtKB/Swiss-Prot
MGD MGI:1915884 ENTREZGENE
NCBI Gene 68634 ENTREZGENE
PANTHER BETA-AMYLOID BINDING PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TM2 DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tm2d3 PhenoGen
UniProt A0A0U1RNE7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RNF7_MOUSE UniProtKB/TrEMBL
  A0A0U1RPI5_MOUSE UniProtKB/TrEMBL
  A0A0U1RPK3_MOUSE UniProtKB/TrEMBL
  A0A0U1RPS4_MOUSE UniProtKB/TrEMBL
  A0A0U1RQB1_MOUSE UniProtKB/TrEMBL
  D3Z3H7_MOUSE UniProtKB/TrEMBL
  Q8BJ83 ENTREZGENE
  Q9D156 ENTREZGENE
  TM2D3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9D156 UniProtKB/Swiss-Prot