Myo9a (myosin IXa) - Rat Genome Database

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Gene: Myo9a (myosin IXa) Mus musculus
Analyze
Symbol: Myo9a
Name: myosin IXa
RGD ID: 1551281
MGI Page MGI
Description: Predicted to enable actin filament binding activity and microfilament motor activity. Involved in postsynaptic specialization organization and regulation of neuron projection arborization. Located in axonal growth cone. Is active in Schaffer collateral - CA1 synapse. Is expressed in several structures, including alimentary system; genitourinary system; limb; nervous system; and sensory organ. Used to study focal segmental glomerulosclerosis and obstructive hydrocephalus. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome. Orthologous to human MYO9A (myosin IXA).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732465J09Rik; C130068I12Rik; C230003M11; myosin-IXa; unconventional myosin-9a; unconventional myosin-IXa
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,658,128 - 59,836,149 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl959,658,179 - 59,836,149 (+)EnsemblGRCm39 Ensembl
GRCm38959,750,848 - 59,928,866 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,750,896 - 59,928,866 (+)EnsemblGRCm38mm10GRCm38
MGSCv37959,598,981 - 59,776,673 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36959,549,191 - 59,726,872 (+)NCBIMGSCv36mm8
Celera956,978,493 - 57,156,228 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map932.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8884266   PMID:8889548   PMID:10349636   PMID:10409426   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11212352   PMID:11217851   PMID:12477932   PMID:12904583   PMID:14610273  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:19828736   PMID:21267068   PMID:21677750   PMID:21862448   PMID:21873635   PMID:26136556   PMID:26834556   PMID:27259756   PMID:27626380  
PMID:29462312   PMID:30713523   PMID:30973865   PMID:32325033   PMID:32560809   PMID:32581705   PMID:33230847   PMID:33412162   PMID:37142655   PMID:38355793  


Genomics

Comparative Map Data
Myo9a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,658,128 - 59,836,149 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl959,658,179 - 59,836,149 (+)EnsemblGRCm39 Ensembl
GRCm38959,750,848 - 59,928,866 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,750,896 - 59,928,866 (+)EnsemblGRCm38mm10GRCm38
MGSCv37959,598,981 - 59,776,673 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36959,549,191 - 59,726,872 (+)NCBIMGSCv36mm8
Celera956,978,493 - 57,156,228 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map932.13NCBI
MYO9A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381571,822,291 - 72,118,600 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1571,822,291 - 72,118,577 (-)EnsemblGRCh38hg38GRCh38
GRCh371572,114,632 - 72,410,491 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361569,905,405 - 70,197,476 (-)NCBINCBI36Build 36hg18NCBI36
Build 341569,905,416 - 70,197,245NCBI
Celera1549,004,720 - 49,296,754 (-)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1548,948,830 - 49,240,766 (-)NCBIHuRef
CHM1_11572,236,489 - 72,528,413 (-)NCBICHM1_1
T2T-CHM13v2.01569,641,241 - 69,935,336 (-)NCBIT2T-CHM13v2.0
Myo9a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8869,044,853 - 69,248,094 (+)NCBIGRCr8
mRatBN7.2860,149,234 - 60,352,330 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl860,149,234 - 60,350,514 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx865,671,483 - 65,874,440 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0863,944,409 - 64,147,367 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0861,813,862 - 62,016,821 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0864,573,248 - 64,777,607 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl864,573,358 - 64,777,543 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0864,335,907 - 64,534,890 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4863,578,001 - 63,783,813 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1863,597,054 - 63,802,860 (+)NCBI
Celera859,592,114 - 59,790,799 (+)NCBICelera
Cytogenetic Map8q24NCBI
Myo9a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554505,049,864 - 5,252,721 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554505,049,797 - 5,256,934 (+)NCBIChiLan1.0ChiLan1.0
MYO9A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21661,085,423 - 61,383,454 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11565,249,695 - 65,547,657 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01550,771,747 - 51,069,700 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11569,537,071 - 69,833,597 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1569,541,318 - 69,760,771 (-)Ensemblpanpan1.1panPan2
MYO9A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13035,386,299 - 35,606,993 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3035,389,424 - 35,606,859 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3035,322,734 - 35,586,056 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03035,592,114 - 35,853,053 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3035,592,118 - 35,852,421 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13035,542,999 - 35,806,184 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03035,570,983 - 35,834,592 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03035,825,200 - 36,087,946 (-)NCBIUU_Cfam_GSD_1.0
Myo9a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640113,407,324 - 113,700,707 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647131,259,652 - 31,473,926 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647131,255,387 - 31,548,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO9A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1169,374,311 - 169,596,412 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11169,370,028 - 169,596,771 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21188,117,293 - 188,197,196 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYO9A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12611,339,033 - 11,640,982 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2611,339,246 - 11,639,956 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048129,926,660 - 130,235,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Myo9a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247811,967,671 - 2,175,150 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247811,900,669 - 2,179,269 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Myo9a
4197 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4499
Count of miRNA genes:752
Interacting mature miRNAs:984
Transcripts:ENSMUST00000126631, ENSMUST00000127933, ENSMUST00000128341, ENSMUST00000130497, ENSMUST00000135298, ENSMUST00000136740, ENSMUST00000147364, ENSMUST00000151167
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1301287Feml2_mfemur length in high growth mice 2 (mouse)Not determined95750728363207282Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95780504771481754Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95878431868556008Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95759149265831177Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse

Markers in Region
RH127080  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38959,777,658 - 59,777,881UniSTSGRCm38
MGSCv37959,625,465 - 59,625,688UniSTSGRCm37
Celera957,004,950 - 57,005,173UniSTS
Cytogenetic Map9BUniSTS
cM Map933.0UniSTS
Whitehead/MRC_RH9592.51UniSTS
32.MMHAP64FLC5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38959,820,961 - 59,821,062UniSTSGRCm38
MGSCv37959,668,768 - 59,668,869UniSTSGRCm37
Celera957,048,094 - 57,048,195UniSTS
Cytogenetic Map9BUniSTS
cM Map933.0UniSTS
Whitehead_YAC9 UniSTS
ABRA  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38959,783,616 - 59,784,702UniSTSGRCm38
MGSCv37959,631,423 - 59,632,509UniSTSGRCm37
Celera957,010,899 - 57,011,985UniSTS
Cytogenetic Map9BUniSTS
cM Map933.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000126631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,817,181 - 59,818,223 (+)Ensembl
GRCm38.p6 Ensembl959,909,898 - 59,910,940 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127933
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,814,376 - 59,819,856 (+)Ensembl
GRCm38.p6 Ensembl959,907,093 - 59,912,573 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128341   ⟹   ENSMUSP00000119401
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,658,179 - 59,836,149 (+)Ensembl
GRCm38.p6 Ensembl959,750,896 - 59,928,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130497
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,813,123 - 59,817,933 (+)Ensembl
GRCm38.p6 Ensembl959,905,840 - 59,910,650 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135298   ⟹   ENSMUSP00000117432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,658,179 - 59,836,149 (+)Ensembl
GRCm38.p6 Ensembl959,750,896 - 59,928,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136740   ⟹   ENSMUSP00000122852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,658,179 - 59,836,149 (+)Ensembl
GRCm38.p6 Ensembl959,750,896 - 59,928,866 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147364
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,779,054 - 59,792,647 (+)Ensembl
GRCm38.p6 Ensembl959,871,771 - 59,885,364 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,803,807 - 59,813,550 (+)Ensembl
GRCm38.p6 Ensembl959,896,524 - 59,906,267 (+)Ensembl
RefSeq Acc Id: NM_173018   ⟹   NP_766606
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,457 - 59,836,149 (+)NCBI
GRCm38959,751,174 - 59,928,866 (+)NCBI
MGSCv37959,598,981 - 59,776,673 (+)RGD
Celera956,978,493 - 57,156,228 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511208   ⟹   XP_006511271
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,477 - 59,836,138 (+)NCBI
GRCm38959,751,260 - 59,928,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511209   ⟹   XP_006511272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,133 - 59,836,146 (+)NCBI
GRCm38959,750,848 - 59,928,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511210   ⟹   XP_006511273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,142 - 59,836,146 (+)NCBI
GRCm38959,750,859 - 59,928,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511211   ⟹   XP_006511274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,477 - 59,836,138 (+)NCBI
GRCm38959,751,260 - 59,928,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511212   ⟹   XP_006511275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,477 - 59,836,138 (+)NCBI
GRCm38959,751,260 - 59,928,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511213   ⟹   XP_006511276
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,477 - 59,836,138 (+)NCBI
GRCm38959,751,260 - 59,928,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511215   ⟹   XP_006511278
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,218 - 59,836,138 (+)NCBI
GRCm38959,750,969 - 59,928,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511216   ⟹   XP_006511279
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,477 - 59,836,138 (+)NCBI
GRCm38959,751,260 - 59,928,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511217   ⟹   XP_006511280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,477 - 59,836,138 (+)NCBI
GRCm38959,751,260 - 59,928,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511220   ⟹   XP_006511283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,142 - 59,836,146 (+)NCBI
GRCm38959,750,859 - 59,928,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313399   ⟹   XP_017168888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,142 - 59,836,146 (+)NCBI
GRCm38959,750,859 - 59,928,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313400   ⟹   XP_017168889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,477 - 59,802,137 (+)NCBI
GRCm38959,751,260 - 59,894,854 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155030   ⟹   XP_036010923
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,128 - 59,836,146 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155031   ⟹   XP_036010924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,128 - 59,836,146 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155032   ⟹   XP_036010925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,477 - 59,836,138 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155033   ⟹   XP_036010926
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,658,201 - 59,836,138 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766606   ⟸   NM_173018
- UniProtKB: D3Z3A8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511272   ⟸   XM_006511209
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511271   ⟸   XM_006511208
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511275   ⟸   XM_006511212
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006511274   ⟸   XM_006511211
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006511279   ⟸   XM_006511216
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006511280   ⟸   XM_006511217
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006511273   ⟸   XM_006511210
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006511283   ⟸   XM_006511220
- Peptide Label: isoform X14
- UniProtKB: Q8C170 (UniProtKB/Swiss-Prot),   Q8C0U0 (UniProtKB/Swiss-Prot),   Q80Y92 (UniProtKB/Swiss-Prot),   Q4VBD3 (UniProtKB/Swiss-Prot),   Q3TRT5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511276   ⟸   XM_006511213
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006511278   ⟸   XM_006511215
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017168888   ⟸   XM_017313399
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017168889   ⟸   XM_017313400
- Peptide Label: isoform X13
- Sequence:
Ensembl Acc Id: ENSMUSP00000117432   ⟸   ENSMUST00000135298
Ensembl Acc Id: ENSMUSP00000119401   ⟸   ENSMUST00000128341
Ensembl Acc Id: ENSMUSP00000122852   ⟸   ENSMUST00000136740
RefSeq Acc Id: XP_036010923   ⟸   XM_036155030
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036010924   ⟸   XM_036155031
- Peptide Label: isoform X4
- UniProtKB: D3Z3A8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036010926   ⟸   XM_036155033
- Peptide Label: isoform X9
RefSeq Acc Id: XP_036010925   ⟸   XM_036155032
- Peptide Label: isoform X6
Protein Domains
IQ   Myosin motor   Phorbol-ester/DAG-type   Ras-associating   Rho-GAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C170-F1-model_v2 AlphaFold Q8C170 1-2542 view protein structure

Promoters
RGD ID:6844863
Promoter ID:MM_KWN:57625
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000085572,   NM_001172068,   NM_001172069,   NM_001172070,   NM_001172071,   NM_027838,   OTTMUST00000086327,   OTTMUST00000086328,   OTTMUST00000086329,   UC009PYQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36959,598,351 - 59,599,357 (+)MPROMDB
RGD ID:8669856
Promoter ID:EPDNEW_M12958
Type:initiation region
Name:Myo9a_1
Description:Mus musculus myosin IXa , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38959,751,170 - 59,751,230EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107735 AgrOrtholog
Ensembl Genes ENSMUSG00000039585 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000128341 ENTREZGENE
  ENSMUST00000128341.2 UniProtKB/Swiss-Prot
  ENSMUST00000135298 ENTREZGENE
  ENSMUST00000135298.8 UniProtKB/Swiss-Prot
  ENSMUST00000136740 ENTREZGENE
  ENSMUST00000136740.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.820 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.555.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.5.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.530 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.20.240.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin VI head, motor domain, U50 subdomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C1-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IQ_motif_EF-hand-BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myo9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYO9A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYSc_Myo9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP_myosin_IX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:270163 UniProtKB/TrEMBL
MGD MGI:107735 ENTREZGENE
NCBI Gene Myo9a ENTREZGENE
PANTHER PTHR46184:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_head UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00612 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00788 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myo9a PhenoGen
PRINTS MYOSINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MYOSIN_MOTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHOGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MYSc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57889 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z3A8 ENTREZGENE, UniProtKB/TrEMBL
  MYO9A_MOUSE UniProtKB/Swiss-Prot
  Q3TRT5 ENTREZGENE
  Q4VBD3 ENTREZGENE
  Q80Y92 ENTREZGENE
  Q8C0U0 ENTREZGENE
  Q8C170 ENTREZGENE
UniProt Secondary Q3TRT5 UniProtKB/Swiss-Prot
  Q4VBD3 UniProtKB/Swiss-Prot
  Q80Y92 UniProtKB/Swiss-Prot
  Q8C0U0 UniProtKB/Swiss-Prot