Myo9b (myosin IXb) - Rat Genome Database

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Gene: Myo9b (myosin IXb) Rattus norvegicus
Analyze
Symbol: Myo9b
Name: myosin IXb
RGD ID: 3146
Description: Exhibits several functions, including ATP-dependent protein binding activity; GTPase activator activity; and adenyl ribonucleotide binding activity. Involved in Rho protein signal transduction. Localizes to several cellular components, including actin filament; lamellipodium; and ruffle. Human ortholog(s) of this gene implicated in celiac disease. Orthologous to human MYO9B (myosin IXB); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,6-dinitrotoluene; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: myosin-IXb; myr 5; Unconventional myosin from rat 3; unconventional myosin-9b; unconventional myosin-IXb
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21617,945,379 - 18,030,114 (+)NCBI
Rnor_6.0 Ensembl1619,669,411 - 19,754,069 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01619,669,373 - 19,754,065 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01619,529,497 - 19,614,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,434,261 - 18,519,220 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,434,258 - 18,519,218 (+)NCBI
Celera1618,153,160 - 18,237,714 (+)NCBICelera
RH 3.4 Map16194.32RGD
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin filament  (IDA,ISO)
cell cortex  (ISO,ISS)
cytoplasm  (IDA,ISO)
cytosol  (ISO)
filopodium tip  (ISO)
lamellipodium  (IDA,ISO)
myosin complex  (IEA)
perinuclear region of cytoplasm  (IDA,ISO)
ruffle  (IDA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:8907710   PMID:9490638   PMID:11901422   PMID:16338935   PMID:16616011   PMID:17314409   PMID:19059909   PMID:19946888   PMID:20566876   PMID:22250289   PMID:26529257   PMID:32203420  


Genomics

Comparative Map Data
Myo9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21617,945,379 - 18,030,114 (+)NCBI
Rnor_6.0 Ensembl1619,669,411 - 19,754,069 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01619,669,373 - 19,754,065 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01619,529,497 - 19,614,171 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,434,261 - 18,519,220 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,434,258 - 18,519,218 (+)NCBI
Celera1618,153,160 - 18,237,714 (+)NCBICelera
RH 3.4 Map16194.32RGD
Cytogenetic Map16p14NCBI
MYO9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,075,777 - 17,214,537 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,075,777 - 17,213,286 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,186,587 - 17,324,095 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,073,528 - 17,185,104 (+)NCBINCBI36hg18NCBI36
Build 341917,073,527 - 17,185,103NCBI
Celera1917,088,108 - 17,225,623 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1916,754,814 - 16,891,543 (+)NCBIHuRef
CHM1_11917,186,170 - 17,323,621 (+)NCBICHM1_1
Myo9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,725,220 - 71,813,357 (+)NCBIGRCm39mm39
GRCm39 Ensembl871,725,358 - 71,813,357 (+)Ensembl
GRCm38871,272,576 - 71,360,713 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,272,714 - 71,360,713 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,796,613 - 73,884,611 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,201,723 - 74,289,702 (+)NCBImm8
Celera873,795,997 - 73,883,793 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
Myo9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524974,844 - 1,024,311 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524973,576 - 1,024,351 (-)NCBIChiLan1.0ChiLan1.0
MYO9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11917,648,078 - 17,675,265 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01916,563,005 - 16,700,312 (+)NCBIMhudiblu_PPA_v0panPan3
MYO9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,512,286 - 45,582,619 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,512,276 - 45,582,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,425,567 - 45,514,804 (-)NCBI
ROS_Cfam_1.02045,998,435 - 46,087,703 (-)NCBI
UMICH_Zoey_3.12045,235,049 - 45,324,280 (-)NCBI
UNSW_CanFamBas_1.02045,644,898 - 45,734,128 (-)NCBI
UU_Cfam_GSD_1.02045,920,708 - 46,010,162 (-)NCBI
Myo9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,068,547 - 204,148,216 (-)NCBI
SpeTri2.0NW_0049365963,617,680 - 3,697,332 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,455,605 - 60,567,505 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,455,605 - 60,567,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,972,826 - 60,077,954 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MYO9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,571,276 - 15,707,571 (+)NCBI
ChlSab1.1 Ensembl615,596,583 - 15,707,567 (+)Ensembl
Vero_WHO_p1.0NW_0236660743,725,513 - 3,862,680 (-)NCBI
Myo9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908689,373 - 751,851 (-)NCBI

Position Markers
RH94693  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,029,797 - 18,029,975 (+)MAPPER
Rnor_6.01619,753,749 - 19,753,926NCBIRnor6.0
Rnor_5.01619,613,855 - 19,614,032UniSTSRnor5.0
RGSC_v3.41618,518,906 - 18,519,083UniSTSRGSC3.4
Celera1618,237,398 - 18,237,575UniSTS
RH 3.4 Map16194.32UniSTS
Cytogenetic Map16p14UniSTS
AI237607  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,015,383 - 18,015,474 (+)MAPPER
Rnor_6.01619,739,336 - 19,739,426NCBIRnor6.0
Rnor_5.01619,599,441 - 19,599,531UniSTSRnor5.0
RGSC_v3.41618,504,186 - 18,504,276UniSTSRGSC3.4
Celera1618,222,917 - 18,223,007UniSTS
RH 3.4 Map16182.5UniSTS
Cytogenetic Map16p14UniSTS
UniSTS:259375  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,028,774 - 18,029,392 (+)MAPPER
Rnor_6.01619,752,727 - 19,753,344NCBIRnor6.0
Rnor_5.01619,612,833 - 19,613,450UniSTSRnor5.0
RGSC_v3.41618,517,884 - 18,518,501UniSTSRGSC3.4
Celera1618,236,376 - 18,236,993UniSTS
Cytogenetic Map16p14UniSTS
UniSTS:259378  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21618,027,619 - 18,028,436 (+)MAPPER
Rnor_6.01619,751,572 - 19,752,388NCBIRnor6.0
Rnor_5.01619,611,678 - 19,612,494UniSTSRnor5.0
RGSC_v3.41618,516,729 - 18,517,545UniSTSRGSC3.4
Celera1618,235,221 - 18,236,037UniSTS
Cytogenetic Map16p14UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16124228366Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16127556253Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16127556253Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16127556253Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16131816439Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16133160624Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16134465490Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16141240937Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16141240937Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16141240957Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)1624459345244593Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)16109005486162972Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16134074146340741Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)16155018749247447Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)16155018763210301Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16155018763210301Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)16155018763210301Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)16155018763210301Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16172829746728297Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16413635523105837Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16413635545905331Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16501380245905331Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16501380245905331Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16501380245905331Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16501380250013802Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16501380250169318Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16501380252144919Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16501380264012784Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161730939622744540Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161939818770590230Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161939818770590230Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:243
Count of miRNA genes:159
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000045099
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 50 34 19 34 1 1 74 34 40 11 1
Low 6 7 7 7 7 10 1 1 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001271067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC130232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LS482396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000045099   ⟹   ENSRNOP00000048368
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1619,669,411 - 19,754,069 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081321   ⟹   ENSRNOP00000073856
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1619,686,630 - 19,753,133 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083651   ⟹   ENSRNOP00000071138
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1619,669,411 - 19,754,069 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086105   ⟹   ENSRNOP00000070646
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1619,669,411 - 19,754,065 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087576   ⟹   ENSRNOP00000074785
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1619,669,411 - 19,754,069 (+)Ensembl
RefSeq Acc Id: NM_001271066   ⟹   NP_001257995
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,448 - 18,030,114 (+)NCBI
Rnor_6.01619,669,411 - 19,754,065 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Celera1618,153,160 - 18,237,714 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001271067   ⟹   NP_001257996
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,448 - 18,030,114 (+)NCBI
Rnor_6.01619,669,411 - 19,754,065 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Celera1618,153,160 - 18,237,714 (+)NCBI
Sequence:
RefSeq Acc Id: NM_012984   ⟹   NP_037116
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,448 - 18,030,114 (+)NCBI
Rnor_6.01619,669,411 - 19,754,065 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
RGSC_v3.41618,434,261 - 18,519,220 (+)RGD
Celera1618,153,160 - 18,237,714 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252824   ⟹   XP_006252886
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252825   ⟹   XP_006252887
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252826   ⟹   XP_006252888
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252827   ⟹   XP_006252889
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252828   ⟹   XP_006252890
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252829   ⟹   XP_006252891
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252830   ⟹   XP_006252892
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252831   ⟹   XP_006252893
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252832   ⟹   XP_006252894
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252833   ⟹   XP_006252895
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252834   ⟹   XP_006252896
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252835   ⟹   XP_006252897
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252836   ⟹   XP_006252898
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252837   ⟹   XP_006252899
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252838   ⟹   XP_006252900
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252839   ⟹   XP_006252901
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,669,373 - 19,754,064 (+)NCBI
Rnor_5.01619,529,497 - 19,614,171 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599999   ⟹   XP_017455488
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,678,432 - 19,754,064 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094206   ⟹   XP_038950134
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094207   ⟹   XP_038950135
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094208   ⟹   XP_038950136
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094209   ⟹   XP_038950137
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094210   ⟹   XP_038950138
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094211   ⟹   XP_038950139
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094212   ⟹   XP_038950140
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094213   ⟹   XP_038950141
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094214   ⟹   XP_038950142
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094215   ⟹   XP_038950143
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094216   ⟹   XP_038950144
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094217   ⟹   XP_038950145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094218   ⟹   XP_038950146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
RefSeq Acc Id: XM_039094219   ⟹   XP_038950147
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21617,945,379 - 18,030,113 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001257995 (Get FASTA)   NCBI Sequence Viewer  
  NP_001257996 (Get FASTA)   NCBI Sequence Viewer  
  NP_037116 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252886 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252890 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252892 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252893 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252894 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252895 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252896 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252897 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252898 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252899 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252900 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950134 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950135 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950136 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950137 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950138 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950139 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950140 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950141 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950142 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950143 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950144 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950145 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950146 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950147 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL90818 (Get FASTA)   NCBI Sequence Viewer  
  EDL90819 (Get FASTA)   NCBI Sequence Viewer  
  Q63358 (Get FASTA)   NCBI Sequence Viewer  
  SPT35773 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_037116   ⟸   NM_012984
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: NP_001257995   ⟸   NM_001271066
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JYG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257996   ⟸   NM_001271067
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: XP_006252886   ⟸   XM_006252824
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006252901   ⟸   XM_006252839
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_006252891   ⟸   XM_006252829
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006252887   ⟸   XM_006252825
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006252889   ⟸   XM_006252827
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006252890   ⟸   XM_006252828
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006252896   ⟸   XM_006252834
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_006252892   ⟸   XM_006252830
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006252898   ⟸   XM_006252836
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_006252894   ⟸   XM_006252832
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_006252900   ⟸   XM_006252838
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_006252888   ⟸   XM_006252826
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006252893   ⟸   XM_006252831
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_006252897   ⟸   XM_006252835
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006252895   ⟸   XM_006252833
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_006252899   ⟸   XM_006252837
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017455488   ⟸   XM_017599999
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000048368   ⟸   ENSRNOT00000045099
RefSeq Acc Id: ENSRNOP00000074785   ⟸   ENSRNOT00000087576
RefSeq Acc Id: ENSRNOP00000073856   ⟸   ENSRNOT00000081321
RefSeq Acc Id: ENSRNOP00000071138   ⟸   ENSRNOT00000083651
RefSeq Acc Id: ENSRNOP00000070646   ⟸   ENSRNOT00000086105
RefSeq Acc Id: XP_038950134   ⟸   XM_039094206
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950147   ⟸   XM_039094219
- Peptide Label: isoform X25
RefSeq Acc Id: XP_038950139   ⟸   XM_039094211
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038950135   ⟸   XM_039094207
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950137   ⟸   XM_039094209
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038950138   ⟸   XM_039094210
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950143   ⟸   XM_039094215
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038950141   ⟸   XM_039094213
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038950140   ⟸   XM_039094212
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038950144   ⟸   XM_039094216
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038950136   ⟸   XM_039094208
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950142   ⟸   XM_039094214
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038950145   ⟸   XM_039094217
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038950146   ⟸   XM_039094218
- Peptide Label: isoform X24
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699992
Promoter ID:EPDNEW_R10516
Type:multiple initiation site
Name:Myo9b_1
Description:myosin IXb
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01619,669,381 - 19,669,441EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3146 AgrOrtholog
Ensembl Genes ENSRNOG00000016256 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000048368 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000070646 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000071138 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000073856 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000074785 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045099 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000081321 UniProtKB/Swiss-Prot
  ENSRNOT00000083651 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000086105 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000087576 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro IQ_motif_EF-hand-BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYO9B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myosin_head_motor_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MYSc_Myo9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25486 UniProtKB/TrEMBL
NCBI Gene 25486 ENTREZGENE
PANTHER PTHR46184:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Myosin_head UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00612 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00788 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myo9b PhenoGen
PRINTS MYOSINHEAVY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MYOSIN_MOTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHOGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MYSc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RhoGAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC205986
UniProt A0A0G2JYG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2X0SFK0_RAT UniProtKB/TrEMBL
  MYO9B_RAT UniProtKB/Swiss-Prot
  Q4W1H3_RAT UniProtKB/TrEMBL
  Q4W1H4_RAT UniProtKB/TrEMBL
  Q63358 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Myo9b  myosin IXb  Myr5  Unconventional myosin from rat 3  Symbol and Name updated 1299863 APPROVED
2002-06-10 Myr5  Unconventional myosin from rat 3      Symbol and Name status set to approved 70586 APPROVED