ARMC7 (armadillo repeat containing 7) - Rat Genome Database

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Gene: ARMC7 (armadillo repeat containing 7) Canis lupus familiaris
Analyze
Symbol: ARMC7
Name: armadillo repeat containing 7
RGD ID: 15036875
Description:
Type: protein-coding
Previously known as: armadillo repeat-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl95,344,420 - 5,366,661 (-)EnsemblCanFam3.1canFam3CanFam3.1


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
ARMC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl95,344,420 - 5,366,661 (-)EnsemblCanFam3.1canFam3CanFam3.1
ARMC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,109,969 - 75,130,272 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,109,952 - 75,130,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371773,106,064 - 73,126,367 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,617,677 - 70,637,955 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,617,676 - 70,637,955NCBI
Celera1769,698,445 - 69,718,737 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,515,672 - 68,536,048 (+)NCBIHuRef
CHM1_11773,170,585 - 73,190,860 (+)NCBICHM1_1
T2T-CHM13v2.01776,001,436 - 76,021,735 (+)NCBIT2T-CHM13v2.0
Armc7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,366,461 - 115,381,294 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,366,493 - 115,381,293 (+)EnsemblGRCm39 Ensembl
GRCm3811115,475,635 - 115,490,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,475,667 - 115,490,467 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,336,991 - 115,351,780 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,291,767 - 115,306,556 (+)NCBIMGSCv36mm8
Celera11127,242,563 - 127,257,337 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.84NCBI
Armc7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,222,056 - 101,238,598 (+)NCBIGRCr8
mRatBN7.210100,723,080 - 100,739,636 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,723,105 - 100,739,636 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,783,212 - 105,800,028 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,246,281 - 105,263,099 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,644,086 - 100,660,609 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,036,250 - 104,052,852 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,036,367 - 104,052,852 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,227,119 - 104,243,710 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,558,266 - 105,574,799 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,566,900 - 105,587,815 (+)NCBI
Celera1099,298,091 - 99,314,563 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Armc7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,002,388 - 2,010,619 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,002,636 - 2,010,619 (+)NCBIChiLan1.0ChiLan1.0
ARMC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,148,733 - 91,169,496 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,971,782 - 95,992,529 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,056,295 - 69,077,026 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,612,558 - 74,632,854 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,612,558 - 74,632,854 (+)Ensemblpanpan1.1panPan2
Armc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,981,694 - 5,991,300 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594420,728 - 430,147 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594420,701 - 430,265 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,153,545 - 6,183,102 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,153,968 - 6,183,165 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,126,076 - 6,145,584 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARMC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,533,762 - 46,557,907 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607717,310,778 - 17,338,714 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Armc7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,941,441 - 4,951,811 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,941,376 - 4,951,657 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6 1 3 10 2
Low 5 5 16 6 5 6 3 6 12 8 4
Below cutoff

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENSCAFT00000007598   ⟹   ENSCAFP00000007036
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,344,420 - 5,366,628 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000085432   ⟹   ENSCAFP00000053037
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,360,904 - 5,366,661 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000089740   ⟹   ENSCAFP00000051383
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,362,139 - 5,366,661 (-)Ensembl
Reference Protein Sequences
RefSeq Acc Id: ENSCAFP00000051383   ⟸   ENSCAFT00000089740
RefSeq Acc Id: ENSCAFP00000053037   ⟸   ENSCAFT00000085432
RefSeq Acc Id: ENSCAFP00000007036   ⟸   ENSCAFT00000007598


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004719 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002991 UniProtKB/TrEMBL
  ENSCAFG00040003493 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007598.5 UniProtKB/TrEMBL
  ENSCAFT00000085432.2 UniProtKB/TrEMBL
  ENSCAFT00000089740.2 UniProtKB/TrEMBL
  ENSCAFT00030005611.1 UniProtKB/TrEMBL
  ENSCAFT00030005618.1 UniProtKB/TrEMBL
  ENSCAFT00030005628.1 UniProtKB/TrEMBL
  ENSCAFT00040006645.1 UniProtKB/TrEMBL
  ENSCAFT00040006648.1 UniProtKB/TrEMBL
  ENSCAFT00040006654.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  ARMC7 UniProtKB/TrEMBL
NCBI Gene ARMC7 ENTREZGENE
PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
  PTHR46263 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0PYH3_CANLF UniProtKB/TrEMBL
  A0A8C0Q1Z5_CANLF UniProtKB/TrEMBL
  A0A8C0RBI0_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:51922 ENTREZGENE