MIR214 (microRNA mir-214) - Rat Genome Database

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Gene: MIR214 (microRNA mir-214) Sus scrofa
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Symbol: MIR214 (Ensembl: ssc-mir-214)
Name: microRNA mir-214 (Ensembl:ssc-mir-214)
RGD ID: 14294798
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 214; ssc-mir-214
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,527,990 - 114,528,101 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,527,992 - 114,528,101 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29126,099,461 - 126,099,570 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:15885146   PMID:16381832   PMID:21312241   PMID:25230983   PMID:30051550  


Genomics

Comparative Map Data
MIR214
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,527,990 - 114,528,101 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,527,992 - 114,528,101 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29126,099,461 - 126,099,570 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MIR214
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,138,798 - 172,138,907 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1172,138,798 - 172,138,907 (-)EnsemblGRCh38hg38GRCh38
GRCh371172,107,938 - 172,108,047 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361170,374,560 - 170,374,669 (-)NCBINCBI36Build 36hg18NCBI36
Celera1145,217,369 - 145,217,478 (-)NCBICelera
Cytogenetic Map1q24.3NCBI
HuRef1143,331,930 - 143,332,039 (-)NCBIHuRef
CHM1_11173,530,115 - 173,530,224 (-)NCBICHM1_1
T2T-CHM13v2.01171,495,517 - 171,495,626 (-)NCBIT2T-CHM13v2.0
Mir214
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,050,937 - 162,051,046 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,050,937 - 162,051,046 (+)EnsemblGRCm39 Ensembl
GRCm381162,223,368 - 162,223,477 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,223,368 - 162,223,477 (+)EnsemblGRCm38mm10GRCm38
MGSCv371164,153,499 - 164,153,608 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1164,673,727 - 164,673,836 (+)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map170.07NCBI
Mir214
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81377,121,645 - 77,121,752 (+)NCBIGRCr8
mRatBN7.21374,588,374 - 74,588,481 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,588,372 - 74,588,481 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1377,157,633 - 77,157,740 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01378,465,002 - 78,465,109 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01375,724,856 - 75,724,963 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01380,130,905 - 80,131,014 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01385,024,815 - 85,024,924 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map13q22NCBI
MIR214
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1726,818,559 - 26,818,668 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl726,818,559 - 26,818,670 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha726,349,187 - 26,349,296 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0726,569,331 - 26,569,440 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1726,480,256 - 26,480,365 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0726,551,084 - 26,551,193 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0726,701,038 - 26,701,147 (+)NCBIUU_Cfam_GSD_1.0


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 3 20 3 5 13 11 20 3 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000020353
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9114,527,990 - 114,528,101 (-)Ensembl
RefSeq Acc Id: NR_038497
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19114,527,992 - 114,528,101 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000018758 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000020353 ENTREZGENE
miRBase MI0002441 ENTREZGENE
NCBI Gene MIR214 ENTREZGENE
RNAcentral URS00002524E1 RNACentral
  URS00004DAA89 RNACentral
  URS00005F8A9C RNACentral
  URS00007E374F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR214  microRNA mir-214    microRNA 214  Symbol and/or name change 5135510 APPROVED