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Gene: CLTB (clathrin light chain B) Sus scrofa

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Symbol:

CLTB

Name:

clathrin light chain B

RGD ID:

14239192

Description:

ENCODES a protein that exhibits peptide binding (ortholog); INVOLVED IN synaptic vesicle endocytosis (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Lung Neoplasms (ortholog); Sotos syndrome (ortholog); FOUND IN clathrin coat (ortholog); presynaptic endocytic zone membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

clathrin light chain B pseudogene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CLTB (clathrin light chain B)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Cltb (clathrin light chain B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cltb (clathrin, light chain B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cltb (clathrin light chain B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CLTB (clathrin light chain B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CLTB (clathrin light chain B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cltb (clathrin light chain B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CLTB (clathrin light chain B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cltb (clathrin light chain B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	81,464,917 - 81,485,419 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	81,464,887 - 81,484,712 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	83,066,549 - 83,082,535 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ehlers-Danlos syndrome dermatosparaxis type (ISO)

Lung Neoplasms (ISO)

Sotos syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

clathrin-dependent endocytosis (IBA)

intracellular protein transport (IEA)

synaptic vesicle endocytosis (ISO)

vesicle-mediated transport (IEA)

Cellular Component

ciliary membrane (IEA)

clathrin coat (ISO)

clathrin coat of coated pit (IEA)

clathrin coat of trans-Golgi network vesicle (IEA)

clathrin vesicle coat (IBA)

clathrin-coated pit (IEA)

cytoplasmic vesicle (IEA)

cytoplasmic vesicle membrane (IEA)

cytosol (IEA)

intracellular membrane-bounded organelle (IEA)

plasma membrane (IBA,IEA)

postsynaptic endocytic zone cytoplasmic component (IBA)

presynaptic endocytic zone membrane (ISO)

synaptic vesicle membrane (IBA)

trans-Golgi network (IEA)

Molecular Function

clathrin heavy chain binding (IBA)

peptide binding (ISO)

protein binding (ISO)

structural molecule activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Arf family mediated signaling pathway (ISO)

clathrin-dependent synaptic vesicle endocytosis (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:22301074	PMID:30032202	PMID:31582853

Genomics

Comparative Map Data

CLTB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	81,464,917 - 81,485,419 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	81,464,887 - 81,484,712 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	83,066,549 - 83,082,535 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLTB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	176,392,455 - 176,416,569 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	176,392,501 - 176,416,539 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	175,819,456 - 175,843,570 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	175,752,062 - 175,776,146 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	175,752,061 - 175,776,146	NCBI
Celera	5	172,658,136 - 172,682,645 (+)	NCBI		Celera
Cytogenetic Map	5	q35.2	NCBI
HuRef	5	170,744,066 - 170,767,978 (-)	NCBI		HuRef
CHM1_1	5	175,252,405 - 175,276,513 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	176,936,813 - 176,960,926 (-)	NCBI		T2T-CHM13v2.0

Cltb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	54,740,199 - 54,759,186 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	54,740,214 - 54,759,157 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	54,592,386 - 54,611,373 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	54,592,401 - 54,611,344 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	54,694,300 - 54,712,633 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	54,602,561 - 54,620,894 (-)	NCBI		MGSCv36	mm8
MGSCv36	13	54,074,085 - 54,092,362 (-)	NCBI		MGSCv36	mm8
Celera	13	55,659,315 - 55,676,939 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	28.84	NCBI

Cltb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	10,006,416 - 10,024,278 (+)	NCBI		GRCr8
mRatBN7.2	17	10,001,512 - 10,019,201 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	10,001,513 - 10,019,169 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	10,015,877 - 10,033,469 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	11,549,271 - 11,566,824 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	10,012,314 - 10,029,907 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	10,537,348 - 10,554,999 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	10,537,365 - 10,554,989 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	12,665,115 - 12,682,779 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	16,063,715 - 16,081,277 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	16,063,714 - 16,081,277 (+)	NCBI
Celera	17	10,074,602 - 10,092,160 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Cltb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	28,692,933 - 28,717,566 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	28,692,933 - 28,717,566 (-)	NCBI	ChiLan1.0	ChiLan1.0

CLTB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	171,471,598 - 171,495,555 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	169,611,137 - 169,635,060 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	171,689,273 - 171,713,198 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	178,761,419 - 178,784,410 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CLTB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	36,915,106 - 36,935,565 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	36,791,891 - 36,935,278 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	36,882,656 - 36,903,076 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	37,282,765 - 37,303,184 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	37,282,782 - 37,303,562 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	37,108,273 - 37,128,468 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	37,295,663 - 37,316,063 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	37,804,632 - 37,825,064 (+)	NCBI		UU_Cfam_GSD_1.0

Cltb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	121,639,288 - 121,664,966 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	662,725 - 689,873 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	665,365 - 689,867 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CLTB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	78,396,089 - 78,420,860 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	78,396,413 - 78,420,819 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	9,524,741 - 9,551,170 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cltb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	13,707,155 - 13,738,814 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	13,707,594 - 13,738,814 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CLTB
280 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005661470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK231941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK233120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK396864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP101981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01100902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000015357 ⟹ ENSSSCP00000014949

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	81,488,092 - 81,495,014 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000041232 ⟹ ENSSSCP00000055507

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	81,464,917 - 81,485,419 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000062284 ⟹ ENSSSCP00000055557

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	81,464,917 - 81,495,014 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000092734 ⟹ ENSSSCP00000076108

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	81,464,917 - 81,485,388 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000099633 ⟹ ENSSSCP00000078384

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	81,464,917 - 81,485,419 (+)	Ensembl

RefSeq Acc Id:

XM_005661470 ⟹ XP_005661527

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	81,464,887 - 81,484,712 (+)	NCBI

Sequence:

show sequence

CCCGTCCCGGCTCCTCCCGCTTGCCGCCGCAGTGACAGGGAAGCCGGGCCCGGTGGCAGAGAGG
AAGTGCGGGGCCGCCGCGCCGAGCCCGTCCCCGCCGAGGCCGGCTCCCCCAGGCGGCTCGGGTG
ACAGTGTCGCGGCCGCCGGGCGCAGCGCGGGGCACGCGCCGGGCAGAGCCAAGGGCCAGGCGGA
CGCTTCAGCAGAGACGCGGGGAAAATGGCTGATGACTTTGGCTTCTTCTCGTCATCGGAGAGCG
GGGCCCCTGAGGTTGCCGAGGAGGACCCGGCGGCTGCCTTCCTGGCCCAGCAGGAGAGTGAAAT
CGCGGGCATAGAGAATGACGAGGGCTTCGGGGCACCTGCCGGCAGCCAGGCGGCCCTCGCGCAG
CCGGGACCAGCGAGTGGGGCAGGTCCTGAGGACATGGGGACCACAGTCAATGGAGATGTGTTTC
AGGATGCTAACGGTCCAGCTGATGGCTACGCTGCCATTGCCCAGGCGGACAGACTGACTCAGGA
ACCCGAGAGCATCCGCAAGTGGAGAGAGGAGCAGCGGAAACGGCTGCAAGAGCTGGATGCTGCC
TCCAAAGTGACGGAACAAGAGTGGCGGGAGAAGGCCAAGAAGGACTTGGAGGAATGGAACCAGC
GCCAGAGTGAGCAAGTTGAGAAGAACAAGATCAATAACCGGATCGCTGACAAAGCATTCTACCA
GCAGCCAGATGCTGATATCATCGGCTACGTGGCATCCGAGGAGGCTTTTGTGAAGGAATCCAAG
GAGGAGACCCCAGGTACAGAGTGGGAGAAGGTGGCCCAGCTGTGTGACTTCAACCCCAAGAGCA
GCAAGCAATGCAAAGACGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAGACACCACT
GTCCCGCTAGGAGCCTGTCACCAGCATGGCCGCCAAGCGGGGGCAGGGCCGGGCAGAGTAGGAG
CAGCTGCTTCGGCCAGGGTGGGGAAAACGCCTCCTGTGGCTGCTACACAGCCTATCCCGTTCCT
CCCCATCTCCCAGGGCTGGGAAGAGGGACGTTCACCCCTCTCGCCCATCACTCCCTCACAGCCC
TATGGCCCAGCCCCTCACATGTCCTCTCAGTCCACAAAATTGACTGTCCCTCCTGATGTATTTT
TTTTTTTCTTGGCTTAAAGGGTGTGTTGTTAACTCTTTTTACACTTATTTATTATCATTCTCAT
TTCTCTGGAAGCTGC

hide sequence

RefSeq Acc Id:

XM_021084431 ⟹ XP_020940090

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	81,464,887 - 81,484,712 (+)	NCBI

Sequence:

show sequence

CCCGTCCCGGCTCCTCCCGCTTGCCGCCGCAGTGACAGGGAAGCCGGGCCCGGTGGCAGAGAGG
AAGTGCGGGGCCGCCGCGCCGAGCCCGTCCCCGCCGAGGCCGGCTCCCCCAGGCGGCTCGGGTG
ACAGTGTCGCGGCCGCCGGGCGCAGCGCGGGGCACGCGCCGGGCAGAGCCAAGGGCCAGGCGGA
CGCTTCAGCAGAGACGCGGGGAAAATGGCTGATGACTTTGGCTTCTTCTCGTCATCGGAGAGCG
GGGCCCCTGAGGTTGCCGAGGAGGACCCGGCGGCTGCCTTCCTGGCCCAGCAGGAGAGTGAAAT
CGCGGGCATAGAGAATGACGAGGGCTTCGGGGCACCTGCCGGCAGCCAGGCGGCCCTCGCGCAG
CCGGGACCAGCGAGTGGGGGTCCTGAGGACATGGGGACCACAGTCAATGGAGATGTGTTTCAGG
ATGCTAACGGTCCAGCTGATGGCTACGCTGCCATTGCCCAGGCGGACAGACTGACTCAGGAACC
CGAGAGCATCCGCAAGTGGAGAGAGGAGCAGCGGAAACGGCTGCAAGAGCTGGATGCTGCCTCC
AAAGTGACGGAACAAGAGTGGCGGGAGAAGGCCAAGAAGGACTTGGAGGAATGGAACCAGCGCC
AGAGTGAGCAAGTTGAGAAGAACAAGATCAATAACCGGATCGCTGACAAAGCATTCTACCAGCA
GCCAGATGCTGATATCATCGGCTACGTGGCATCCGAGGAGGCTTTTGTGAAGGAATCCAAGGAG
GAGACCCCAGGTACAGAGTGGGAGAAGGTGGCCCAGCTGTGTGACTTCAACCCCAAGAGCAGCA
AGCAATGCAAAGACGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAGACACCACTGTC
CCGCTAGGAGCCTGTCACCAGCATGGCCGCCAAGCGGGGGCAGGGCCGGGCAGAGTAGGAGCAG
CTGCTTCGGCCAGGGTGGGGAAAACGCCTCCTGTGGCTGCTACACAGCCTATCCCGTTCCTCCC
CATCTCCCAGGGCTGGGAAGAGGGACGTTCACCCCTCTCGCCCATCACTCCCTCACAGCCCTAT
GGCCCAGCCCCTCACATGTCCTCTCAGTCCACAAAATTGACTGTCCCTCCTGATGTATTTTTTT
TTTTCTTGGCTTAAAGGGTGTGTTGTTAACTCTTTTTACACTTATTTATTATCATTCTCATTTC
TCTGGAAGCTGC

hide sequence

RefSeq Acc Id:

XM_021084432 ⟹ XP_020940091

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	81,464,887 - 81,484,712 (+)	NCBI

Sequence:

show sequence

CCCGTCCCGGCTCCTCCCGCTTGCCGCCGCAGTGACAGGGAAGCCGGGCCCGGTGGCAGAGAGG
AAGTGCGGGGCCGCCGCGCCGAGCCCGTCCCCGCCGAGGCCGGCTCCCCCAGGCGGCTCGGGTG
ACAGTGTCGCGGCCGCCGGGCGCAGCGCGGGGCACGCGCCGGGCAGAGCCAAGGGCCAGGCGGA
CGCTTCAGCAGAGACGCGGGGAAAATGGCTGATGACTTTGGCTTCTTCTCGTCATCGGAGAGCG
GGGCCCCTGAGGTTGCCGAGGAGGACCCGGCGGCTGCCTTCCTGGCCCAGCAGGAGAGTGAAAT
CGCGGGCATAGAGAATGACGAGGGCTTCGGGGCACCTGCCGGCAGCCAGGCGGCCCTCGCGCAG
CCGGGACCAGCGAGTGGGGCAGGTCCTGAGGACATGGGGACCACAGTCAATGGAGATGTGTTTC
AGGATGCTAACGGTCCAGCTGATGGCTACGCTGCCATTGCCCAGGCGGACAGACTGACTCAGGA
ACCCGAGAGCATCCGCAAGTGGAGAGAGGAGCAGCGGAAACGGCTGCAAGAGCTGGATGCTGCC
TCCAAAGTGACGGAACAAGAGTGGCGGGAGAAGGCCAAGAAGGACTTGGAGGAATGGAACCAGC
GCCAGAGTGAGCAAGTTGAGAAGAACAAGATCAATAACCGGGCATCCGAGGAGGCTTTTGTGAA
GGAATCCAAGGAGGAGACCCCAGGTACAGAGTGGGAGAAGGTGGCCCAGCTGTGTGACTTCAAC
CCCAAGAGCAGCAAGCAATGCAAAGACGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGC
AGACACCACTGTCCCGCTAGGAGCCTGTCACCAGCATGGCCGCCAAGCGGGGGCAGGGCCGGGC
AGAGTAGGAGCAGCTGCTTCGGCCAGGGTGGGGAAAACGCCTCCTGTGGCTGCTACACAGCCTA
TCCCGTTCCTCCCCATCTCCCAGGGCTGGGAAGAGGGACGTTCACCCCTCTCGCCCATCACTCC
CTCACAGCCCTATGGCCCAGCCCCTCACATGTCCTCTCAGTCCACAAAATTGACTGTCCCTCCT
GATGTATTTTTTTTTTTCTTGGCTTAAAGGGTGTGTTGTTAACTCTTTTTACACTTATTTATTA
TCATTCTCATTTCTCTGGAAGCTGC

hide sequence

RefSeq Acc Id:

XM_021084433 ⟹ XP_020940092

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	81,464,887 - 81,484,712 (+)	NCBI

Sequence:

show sequence

CCCGTCCCGGCTCCTCCCGCTTGCCGCCGCAGTGACAGGGAAGCCGGGCCCGGTGGCAGAGAGG
AAGTGCGGGGCCGCCGCGCCGAGCCCGTCCCCGCCGAGGCCGGCTCCCCCAGGCGGCTCGGGTG
ACAGTGTCGCGGCCGCCGGGCGCAGCGCGGGGCACGCGCCGGGCAGAGCCAAGGGCCAGGCGGA
CGCTTCAGCAGAGACGCGGGGAAAATGGCTGATGACTTTGGCTTCTTCTCGTCATCGGAGAGCG
GGGCCCCTGAGGTTGCCGAGGAGGACCCGGCGGCTGCCTTCCTGGCCCAGCAGGAGAGTGAAAT
CGCGGGCATAGAGAATGACGAGGGCTTCGGGGCACCTGCCGGCAGCCAGGCGGCCCTCGCGCAG
CCGGGACCAGCGAGTGGGGGTCCTGAGGACATGGGGACCACAGTCAATGGAGATGTGTTTCAGG
ATGCTAACGGTCCAGCTGATGGCTACGCTGCCATTGCCCAGGCGGACAGACTGACTCAGGAACC
CGAGAGCATCCGCAAGTGGAGAGAGGAGCAGCGGAAACGGCTGCAAGAGCTGGATGCTGCCTCC
AAAGTGACGGAACAAGAGTGGCGGGAGAAGGCCAAGAAGGACTTGGAGGAATGGAACCAGCGCC
AGAGTGAGCAAGTTGAGAAGAACAAGATCAATAACCGGGCATCCGAGGAGGCTTTTGTGAAGGA
ATCCAAGGAGGAGACCCCAGGTACAGAGTGGGAGAAGGTGGCCCAGCTGTGTGACTTCAACCCC
AAGAGCAGCAAGCAATGCAAAGACGTGTCCCGCCTGCGCTCGGTGCTCATGTCCCTGAAGCAGA
CACCACTGTCCCGCTAGGAGCCTGTCACCAGCATGGCCGCCAAGCGGGGGCAGGGCCGGGCAGA
GTAGGAGCAGCTGCTTCGGCCAGGGTGGGGAAAACGCCTCCTGTGGCTGCTACACAGCCTATCC
CGTTCCTCCCCATCTCCCAGGGCTGGGAAGAGGGACGTTCACCCCTCTCGCCCATCACTCCCTC
ACAGCCCTATGGCCCAGCCCCTCACATGTCCTCTCAGTCCACAAAATTGACTGTCCCTCCTGAT
GTATTTTTTTTTTTCTTGGCTTAAAGGGTGTGTTGTTAACTCTTTTTACACTTATTTATTATCA
TTCTCATTTCTCTGGAAGCTGC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005661527	(Get FASTA)	NCBI Sequence Viewer
	XP_020940090	(Get FASTA)	NCBI Sequence Viewer
	XP_020940091	(Get FASTA)	NCBI Sequence Viewer
	XP_020940092	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000055507
	ENSSSCP00000055507.2
	ENSSSCP00000076108
	ENSSSCP00000076108.1
	ENSSSCP00000078384.1
	ENSSSCP00015009206.1
	ENSSSCP00015009252.1
	ENSSSCP00015009270.1
	ENSSSCP00025024075.1
	ENSSSCP00025024151.1
	ENSSSCP00025024238.1
	ENSSSCP00030022508.1
	ENSSSCP00030022543.1
	ENSSSCP00030022572.1
	ENSSSCP00035006862.1
	ENSSSCP00035006866.1
	ENSSSCP00035006871.1
	ENSSSCP00040035035.1
	ENSSSCP00040035103.1
	ENSSSCP00040035134.1
	ENSSSCP00045040100.1
	ENSSSCP00045040218.1
	ENSSSCP00045040264.1
	ENSSSCP00050040915.1
	ENSSSCP00050040917.1
	ENSSSCP00050040919.1
	ENSSSCP00055032180.1
	ENSSSCP00055032325.1
	ENSSSCP00055032407.1
	ENSSSCP00060047638.1
	ENSSSCP00060047665.1
	ENSSSCP00060047672.1
	ENSSSCP00065036441.1
	ENSSSCP00065036456.1
	ENSSSCP00065036467.1
	ENSSSCP00070002606.1
	ENSSSCP00070002630.1
	ENSSSCP00070002649.1
	ENSSSCP00070002659.1
	ENSSSCP00070002689.1

RefSeq Acc Id:	XP_005661527 ⟸ XM_005661470
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D0ITW0 (UniProtKB/TrEMBL), A0A480JRB0 (UniProtKB/TrEMBL), A0A287BFZ5 (UniProtKB/TrEMBL), A0A8D0MVM7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASGAG PEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEW REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEW EKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR hide sequence

RefSeq Acc Id:	XP_020940091 ⟸ XM_021084432
- Peptide Label:	isoform X3
- UniProtKB:	A0A4X1SL22 (UniProtKB/TrEMBL), A0A287BG47 (UniProtKB/TrEMBL), A0A8D0MVM7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASGAG PEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEW REKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCK DVSRLRSVLMSLKQTPLSR hide sequence

RefSeq Acc Id:	XP_020940090 ⟸ XM_021084431
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D0MVM7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASGGP EDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWR EKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKESKEETPGTEWE KVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR hide sequence

RefSeq Acc Id:	XP_020940092 ⟸ XM_021084433
- Peptide Label:	isoform X4
- UniProtKB:	A0A8D0MVM7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASGGP EDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVTEQEWR EKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKD VSRLRSVLMSLKQTPLSR hide sequence

Ensembl Acc Id:

ENSSSCP00000014949 ⟸ ENSSSCT00000015357

Ensembl Acc Id:

ENSSSCP00000055507 ⟸ ENSSSCT00000041232

Ensembl Acc Id:

ENSSSCP00000055557 ⟸ ENSSSCT00000062284

Ensembl Acc Id:

ENSSSCP00000076108 ⟸ ENSSSCT00000092734

Ensembl Acc Id:

ENSSSCP00000078384 ⟸ ENSSSCT00000099633

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000014058	Ensembl
	ENSSSCG00000054091	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015017571	UniProtKB/TrEMBL
	ENSSSCG00025041922	UniProtKB/TrEMBL
	ENSSSCG00030035785	UniProtKB/TrEMBL
	ENSSSCG00035015184	UniProtKB/TrEMBL
	ENSSSCG00040059461	UniProtKB/TrEMBL
	ENSSSCG00045033509	UniProtKB/TrEMBL
	ENSSSCG00050069616	UniProtKB/TrEMBL
	ENSSSCG00055020570	UniProtKB/TrEMBL
	ENSSSCG00060077894	UniProtKB/TrEMBL
	ENSSSCG00065061042	UniProtKB/TrEMBL
	ENSSSCG00070001633	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000041232	ENTREZGENE
	ENSSSCT00000041232.3	UniProtKB/TrEMBL
	ENSSSCT00000092734	ENTREZGENE
	ENSSSCT00000092734.1	UniProtKB/TrEMBL
	ENSSSCT00000099633.1	UniProtKB/TrEMBL
	ENSSSCT00015023630.1	UniProtKB/TrEMBL
	ENSSSCT00015023761.1	UniProtKB/TrEMBL
	ENSSSCT00015023819.1	UniProtKB/TrEMBL
	ENSSSCT00025056925.1	UniProtKB/TrEMBL
	ENSSSCT00025057114.1	UniProtKB/TrEMBL
	ENSSSCT00025057320.1	UniProtKB/TrEMBL
	ENSSSCT00030049639.1	UniProtKB/TrEMBL
	ENSSSCT00030049704.1	UniProtKB/TrEMBL
	ENSSSCT00030049744.1	UniProtKB/TrEMBL
	ENSSSCT00035019325.1	UniProtKB/TrEMBL
	ENSSSCT00035019336.1	UniProtKB/TrEMBL
	ENSSSCT00035019342.1	UniProtKB/TrEMBL
	ENSSSCT00040080824.1	UniProtKB/TrEMBL
	ENSSSCT00040080932.1	UniProtKB/TrEMBL
	ENSSSCT00040080978.1	UniProtKB/TrEMBL
	ENSSSCT00045057362.1	UniProtKB/TrEMBL
	ENSSSCT00045057506.1	UniProtKB/TrEMBL
	ENSSSCT00045057564.1	UniProtKB/TrEMBL
	ENSSSCT00050094959.1	UniProtKB/TrEMBL
	ENSSSCT00050094965.1	UniProtKB/TrEMBL
	ENSSSCT00050094972.1	UniProtKB/TrEMBL
	ENSSSCT00055040439.1	UniProtKB/TrEMBL
	ENSSSCT00055040613.1	UniProtKB/TrEMBL
	ENSSSCT00055040739.1	UniProtKB/TrEMBL
	ENSSSCT00060107414.1	UniProtKB/TrEMBL
	ENSSSCT00060107468.1	UniProtKB/TrEMBL
	ENSSSCT00060107488.1	UniProtKB/TrEMBL
	ENSSSCT00065083630.1	UniProtKB/TrEMBL
	ENSSSCT00065083657.1	UniProtKB/TrEMBL
	ENSSSCT00065083671.1	UniProtKB/TrEMBL
	ENSSSCT00070003158.1	UniProtKB/TrEMBL
	ENSSSCT00070003182.1	UniProtKB/TrEMBL
	ENSSSCT00070003204.1	UniProtKB/TrEMBL
	ENSSSCT00070003214.1	UniProtKB/TrEMBL
	ENSSSCT00070003249.1	UniProtKB/TrEMBL
InterPro	Clathrin_L-chain	UniProtKB/TrEMBL
KEGG Report	ssc:100525860	UniProtKB/TrEMBL
NCBI Gene	CLTB	ENTREZGENE
PANTHER	CLATHRIN LIGHT CHAIN B	UniProtKB/TrEMBL
	PTHR10639	UniProtKB/TrEMBL
Pfam	Clathrin_lg_ch	UniProtKB/TrEMBL
PROSITE	CLATHRIN_LIGHT_CHN_1	UniProtKB/TrEMBL
	CLATHRIN_LIGHT_CHN_2	UniProtKB/TrEMBL
UniProt	A0A287BFZ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A287BG47	ENTREZGENE, UniProtKB/TrEMBL
	A0A480JRB0	ENTREZGENE
	A0A4X1SJS7_PIG	UniProtKB/TrEMBL
	A0A4X1SJT5_PIG	UniProtKB/TrEMBL
	A0A4X1SJZ1_PIG	UniProtKB/TrEMBL
	A0A4X1SL22	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0IR97_PIG	UniProtKB/TrEMBL
	A0A8D0ITW0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0MVM7	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A480JRB0	UniProtKB/TrEMBL
	A0A8W4FG31	UniProtKB/TrEMBL
VGNC ID	VGNC:86788	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - PID (archival)