PTH2R (parathyroid hormone 2 receptor) - Rat Genome Database

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Gene: PTH2R (parathyroid hormone 2 receptor) Sus scrofa
Analyze
Symbol: PTH2R
Name: parathyroid hormone 2 receptor
RGD ID: 14216856
Description: ENCODES a protein that exhibits parathyroid hormone receptor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (inferred); cell surface receptor signaling pathway (inferred); G protein-coupled receptor signaling pathway (inferred); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); primary pulmonary hypertension (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: IDH1; isocitrate dehydrogenase 1 (NADP+), soluble
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15111,509,531 - 111,598,829 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115111,509,496 - 111,598,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215123,124,761 - 123,185,921 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:16751257   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PTH2R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15111,509,531 - 111,598,829 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115111,509,496 - 111,598,308 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215123,124,761 - 123,185,921 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTH2R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382208,359,692 - 208,494,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2208,359,714 - 208,854,503 (+)EnsemblGRCh38hg38GRCh38
GRCh372209,224,416 - 209,359,231 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362208,979,801 - 209,067,476 (+)NCBINCBI36Build 36hg18NCBI36
Build 342209,097,061 - 209,184,736NCBI
Celera2203,039,476 - 203,127,142 (+)NCBICelera
Cytogenetic Map2q34NCBI
HuRef2201,071,685 - 201,206,321 (+)NCBIHuRef
CHM1_12209,230,414 - 209,365,040 (+)NCBICHM1_1
T2T-CHM13v2.02208,839,502 - 208,974,285 (+)NCBIT2T-CHM13v2.0
Pth2r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39165,317,921 - 65,428,784 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl165,321,215 - 65,428,403 (+)EnsemblGRCm39 Ensembl
GRCm38165,280,282 - 65,389,625 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl165,282,056 - 65,389,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv37165,357,831 - 65,435,818 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36165,245,872 - 65,323,086 (+)NCBIMGSCv36mm8
Celera165,801,872 - 65,880,183 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map133.05NCBI
Pth2r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8974,199,785 - 74,304,326 (+)NCBIGRCr8
mRatBN7.2966,706,050 - 66,810,601 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl966,706,050 - 66,810,036 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx975,224,757 - 75,332,486 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0980,347,604 - 80,450,942 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0978,763,893 - 78,864,581 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0972,052,966 - 72,158,343 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl972,052,966 - 72,157,773 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0970,414,061 - 70,518,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4963,942,380 - 64,049,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1964,089,361 - 64,196,387 (+)NCBI
Celera964,101,423 - 64,205,579 (+)NCBICelera
Cytogenetic Map9q32NCBI
Pth2r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554576,584,627 - 6,715,337 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554576,584,627 - 6,674,990 (-)NCBIChiLan1.0ChiLan1.0
PTH2R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213110,969,434 - 111,112,053 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B110,984,410 - 111,128,225 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B95,598,732 - 95,746,699 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B213,722,389 - 213,866,526 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B213,769,735 - 213,866,519 (+)Ensemblpanpan1.1panPan2
PTH2R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13716,656,573 - 16,758,313 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3716,678,002 - 16,734,220 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3717,539,128 - 17,640,540 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03716,592,184 - 16,694,239 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3716,592,037 - 16,669,677 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13716,566,302 - 16,646,147 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03716,509,816 - 16,612,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03716,519,218 - 16,621,171 (+)NCBIUU_Cfam_GSD_1.0
Pth2r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303165,022,023 - 165,113,964 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936950114,317 - 204,718 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936950114,265 - 181,948 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTH2R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11094,146,254 - 94,284,056 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1094,216,493 - 94,283,743 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040105,066,687 - 105,176,926 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pth2r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247657,501,225 - 7,627,503 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247657,500,586 - 7,627,440 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PTH2R
3580 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system reproductive system
High
Medium
Low 1 3 1
Below cutoff 2 2 12

Sequence


RefSeq Acc Id: ENSSSCT00000017581   ⟹   ENSSSCP00000017107
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15111,509,531 - 111,598,829 (+)Ensembl
RefSeq Acc Id: XM_005672143   ⟹   XP_005672200
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115111,509,496 - 111,598,308 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005672200   ⟸   XM_005672143
- UniProtKB: F1SST8 (UniProtKB/TrEMBL),   A0A8D1XI39 (UniProtKB/TrEMBL),   A0A4X1UTI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000017107   ⟸   ENSSSCT00000017581

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025021848 UniProtKB/TrEMBL
  ENSSSCG00035080292 UniProtKB/TrEMBL
  ENSSSCG00040041539 UniProtKB/TrEMBL
  ENSSSCG00045020741 UniProtKB/TrEMBL
  ENSSSCG00055007219 UniProtKB/TrEMBL
  ENSSSCG00065011374 UniProtKB/TrEMBL
  ENSSSCG00070020111 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017581 ENTREZGENE
  ENSSSCT00000017581.3 UniProtKB/TrEMBL
  ENSSSCT00025029754.1 UniProtKB/TrEMBL
  ENSSSCT00035109951.1 UniProtKB/TrEMBL
  ENSSSCT00040055792.1 UniProtKB/TrEMBL
  ENSSSCT00045035380.1 UniProtKB/TrEMBL
  ENSSSCT00055014034.1 UniProtKB/TrEMBL
  ENSSSCT00065015129.1 UniProtKB/TrEMBL
  ENSSSCT00070039872.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.1240.10 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPCR_2_secretin-like_CS UniProtKB/TrEMBL
NCBI Gene PTH2R ENTREZGENE
PANTHER PARATHYROID HORMONE 2 RECEPTOR UniProtKB/TrEMBL
  PDF RECEPTOR-LIKE PROTEIN-RELATED UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  HRM UniProtKB/TrEMBL
PRINTS GPCRSECRETIN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
SMART HormR UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
  SSF111418 UniProtKB/TrEMBL
UniProt A0A4X1UTI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1XI39 ENTREZGENE, UniProtKB/TrEMBL
  F1SST8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96516 ENTREZGENE