ERICH3 (glutamate rich 3) - Rat Genome Database

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Gene: ERICH3 (glutamate rich 3) Sus scrofa
Analyze
Symbol: ERICH3
Name: glutamate rich 3
RGD ID: 14207038
Description: INVOLVED IN cilium assembly (ortholog); FOUND IN cytoplasm (ortholog); non-motile cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C6H1orf173; glutamate-rich protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16138,503,816 - 138,615,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26128,368,008 - 128,479,525 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
ERICH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16138,503,816 - 138,615,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26128,368,008 - 128,479,525 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERICH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,568,123 - 74,674,343 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,568,117 - 74,673,792 (-)EnsemblGRCh38hg38GRCh38
GRCh37175,033,807 - 75,139,476 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,806,383 - 74,912,010 (-)NCBINCBI36Build 36hg18NCBI36
Celera173,279,099 - 73,384,675 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef173,168,296 - 73,273,823 (-)NCBIHuRef
CHM1_1175,149,271 - 75,254,893 (-)NCBICHM1_1
T2T-CHM13v2.0174,409,490 - 74,515,692 (-)NCBIT2T-CHM13v2.0
Erich3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393154,416,770 - 154,454,649 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3154,369,496 - 154,473,427 (+)EnsemblGRCm39 Ensembl
GRCm383154,663,731 - 154,767,790 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3154,663,859 - 154,767,790 (+)EnsemblGRCm38mm10GRCm38
MGSCv373154,374,097 - 154,411,976 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363154,658,596 - 154,676,255 (+)NCBIMGSCv36mm8
Celera3161,169,504 - 161,207,061 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map379.28NCBI
Erich3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82246,275,438 - 246,377,673 (+)NCBIGRCr8
mRatBN7.22243,615,777 - 243,717,973 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2243,615,872 - 243,715,317 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02260,947,970 - 261,049,973 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,997,497 - 261,032,821 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02279,609,567 - 279,710,598 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42252,504,847 - 252,606,168 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2235,540,060 - 235,640,461 (+)NCBICelera
Cytogenetic Map2q45NCBI
Erich3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542318,010,090 - 18,108,513 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542318,009,243 - 18,110,340 (+)NCBIChiLan1.0ChiLan1.0
ERICH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21152,205,953 - 152,311,776 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11151,366,352 - 151,472,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,796,620 - 73,902,429 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,771,318 - 75,876,673 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,774,304 - 75,876,673 (-)Ensemblpanpan1.1panPan2
ERICH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1671,706,954 - 71,802,470 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl671,746,262 - 71,788,635 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha674,370,736 - 74,467,798 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0672,300,511 - 72,397,488 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1671,794,381 - 71,889,537 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0671,741,133 - 71,836,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0672,235,646 - 72,333,606 (+)NCBIUU_Cfam_GSD_1.0
Erich3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505886,354,911 - 86,458,294 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365711,864,070 - 1,968,743 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365711,865,342 - 1,968,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERICH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12058,485,324 - 58,596,543 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2058,485,373 - 58,600,011 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603358,856,243 - 58,970,695 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erich3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474222,007,473 - 22,113,643 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ERICH3
3244 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021097617   ⟹   XP_020953276
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16138,503,816 - 138,615,967 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020953276 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00070027569.1
RefSeq Acc Id: XP_020953276   ⟸   XM_021097617
- UniProtKB: A0A4X1UCC3 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
DUF4590


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00070016750 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00070033010.1 UniProtKB/TrEMBL
InterPro DUF4590 UniProtKB/TrEMBL
  ERICH3 UniProtKB/TrEMBL
NCBI Gene ERICH3 ENTREZGENE
PANTHER GLUTAMATE-RICH PROTEIN 3 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF4590 UniProtKB/TrEMBL
UniProt A0A4X1UCC3 ENTREZGENE, UniProtKB/TrEMBL