Erich3 (glutamate rich 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Erich3 (glutamate rich 3) Ictidomys tridecemlineatus
Analyze
Symbol: Erich3
Name: glutamate rich 3
RGD ID: 12570695
Description: INVOLVED IN cilium assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); non-motile cilium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glutamate-rich protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505886,354,911 - 86,458,294 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365711,864,070 - 1,968,743 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365711,865,342 - 1,968,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Erich3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505886,354,911 - 86,458,294 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365711,864,070 - 1,968,743 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365711,865,342 - 1,968,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERICH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38174,568,123 - 74,674,343 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl174,568,117 - 74,673,792 (-)EnsemblGRCh38hg38GRCh38
GRCh37175,033,807 - 75,139,476 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,806,383 - 74,912,010 (-)NCBINCBI36Build 36hg18NCBI36
Celera173,279,099 - 73,384,675 (-)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef173,168,296 - 73,273,823 (-)NCBIHuRef
CHM1_1175,149,271 - 75,254,893 (-)NCBICHM1_1
T2T-CHM13v2.0174,409,490 - 74,515,692 (-)NCBIT2T-CHM13v2.0
Erich3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393154,416,770 - 154,454,649 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3154,369,496 - 154,473,427 (+)EnsemblGRCm39 Ensembl
GRCm383154,663,731 - 154,767,790 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3154,663,859 - 154,767,790 (+)EnsemblGRCm38mm10GRCm38
MGSCv373154,374,097 - 154,411,976 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363154,658,596 - 154,676,255 (+)NCBIMGSCv36mm8
Celera3161,169,504 - 161,207,061 (+)NCBICelera
Cytogenetic Map3H4NCBI
cM Map379.28NCBI
Erich3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82246,275,438 - 246,377,673 (+)NCBIGRCr8
mRatBN7.22243,615,777 - 243,717,973 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2243,615,872 - 243,715,317 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02260,947,970 - 261,049,973 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2260,997,497 - 261,032,821 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02279,609,567 - 279,710,598 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42252,504,847 - 252,606,168 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2235,540,060 - 235,640,461 (+)NCBICelera
Cytogenetic Map2q45NCBI
Erich3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542318,010,090 - 18,108,513 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542318,009,243 - 18,110,340 (+)NCBIChiLan1.0ChiLan1.0
ERICH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21152,205,953 - 152,311,776 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11151,366,352 - 151,472,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0173,796,620 - 73,902,429 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,771,318 - 75,876,673 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,774,304 - 75,876,673 (-)Ensemblpanpan1.1panPan2
ERICH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1671,706,954 - 71,802,470 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl671,746,262 - 71,788,635 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha674,370,736 - 74,467,798 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0672,300,511 - 72,397,488 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1671,794,381 - 71,889,537 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0671,741,133 - 71,836,657 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0672,235,646 - 72,333,606 (+)NCBIUU_Cfam_GSD_1.0
ERICH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16138,503,816 - 138,615,967 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26128,368,008 - 128,479,525 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERICH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12058,485,324 - 58,596,543 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2058,485,373 - 58,600,011 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603358,856,243 - 58,970,695 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erich3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474222,007,473 - 22,113,643 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000029447   ⟹   ENSSTOP00000018024
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365711,864,070 - 1,968,743 (-)Ensembl
RefSeq Acc Id: XM_021730096   ⟹   XP_021585771
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505886,354,911 - 86,458,294 (-)NCBI
SpeTri2.0NW_0049365711,865,342 - 1,968,737 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040288869   ⟹   XP_040144803
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505886,354,911 - 86,419,164 (-)NCBI
RefSeq Acc Id: XM_040288870   ⟹   XP_040144804
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505886,354,911 - 86,405,207 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021585771 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144803 (Get FASTA)   NCBI Sequence Viewer  
  XP_040144804 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018024.2
GenBank Protein KAG3283385 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021585771   ⟸   XM_021730096
- Peptide Label: isoform X1
- UniProtKB: I3N0X8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040144803   ⟸   XM_040288869
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040144804   ⟸   XM_040288870
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000018024   ⟸   ENSSTOT00000029447
Protein Domains
DUF4590


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027579 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029447.2 UniProtKB/TrEMBL
InterPro DUF4590 UniProtKB/TrEMBL
  DUF4590 UniProtKB/TrEMBL
NCBI Gene Erich3 ENTREZGENE
PANTHER GLUTAMATE-RICH PROTEIN 3 UniProtKB/TrEMBL
  PTHR23034 UniProtKB/TrEMBL
Pfam DUF4590 UniProtKB/TrEMBL
UniProt I3N0X8 ENTREZGENE, UniProtKB/TrEMBL